Found: 25

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  • Native bacterial communities and Listeria monocytogenes survival in soils collected from the Lower Mainland of British Columbia, Canada.

    Published in:
    Canadian Journal of Microbiology, 2018, v. 64, n. 10, p. 695, doi. 10.1139/cjm-2018-0115
    By:
    • Falardeau, Justin;
    • Walji, Khalil;
    • Haure, Maxime;
    • Fong, Karen;
    • Taylor, Greg;
    • Ma, Yussanne;
    • Smukler, Sean;
    • Wang, Siyun
    Publication type:
    Article

  • Large-scale profiling of microRNAs for The Cancer Genome Atlas.

    Published in:
    Nucleic Acids Research, 2016, v. 44, n. 1, p. e3, doi. 10.1093/nar/gkv808
    By:
    • Chu, Andy;
    • Robertson, Gordon;
    • Brooks, Denise;
    • Mungall, Andrew J.;
    • Birol, Inanc;
    • Coope, Robin;
    • Ma, Yussanne;
    • Jones, Steven;
    • Marra, Marco A.
    Publication type:
    Article

  • A platform for oncogenomic reporting and interpretation.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28348-y
    By:
    • Reisle, Caralyn;
    • Williamson, Laura M.;
    • Pleasance, Erin;
    • Davies, Anna;
    • Pellegrini, Brayden;
    • Bleile, Dustin W.;
    • Mungall, Karen L.;
    • Chuah, Eric;
    • Jones, Martin R.;
    • Ma, Yussanne;
    • Lewis, Eleanor;
    • Beckie, Isaac;
    • Pham, David;
    • Matiello Pletz, Raphael;
    • Muhammadzadeh, Amir;
    • Pierce, Brandon M.;
    • Li, Jacky;
    • Stevenson, Ross;
    • Wong, Hansen;
    • Bailey, Lance
    Publication type:
    Article

  • The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.

    Published in:
    Nature Genetics, 2013, v. 45, n. 5, p. 522, doi. 10.1038/ng.2583
    By:
    • Weinhold, Niels;
    • Johnson, David C;
    • Chubb, Daniel;
    • Chen, Bowang;
    • Försti, Asta;
    • Hosking, Fay J;
    • Broderick, Peter;
    • Ma, Yussanne P;
    • Dobbins, Sara E;
    • Hose, Dirk;
    • Walker, Brian A;
    • Davies, Faith E;
    • Kaiser, Martin F;
    • Li, Ni L;
    • Gregory, Walter A;
    • Jackson, Graham H;
    • Witzens-Harig, Mathias;
    • Neben, Kai;
    • Hoffmann, Per;
    • Nöthen, Markus M
    Publication type:
    Article

  • Common variation at 3p22.1 and 7p15.3 influences multiple myeloma risk.

    Published in:
    Nature Genetics, 2012, v. 44, n. 1, p. 58, doi. 10.1038/ng.993
    By:
    • Broderick, Peter;
    • Chubb, Daniel;
    • Johnson, David C;
    • Weinhold, Niels;
    • Försti, Asta;
    • Lloyd, Amy;
    • Olver, Bianca;
    • Ma, Yussanne P;
    • Dobbins, Sara E;
    • Walker, Brian A;
    • Davies, Faith E;
    • Gregory, Walter A;
    • Child, J Anthony;
    • Ross, Fiona M;
    • Jackson, Graham H;
    • Neben, Kai;
    • Jauch, Anna;
    • Hoffmann, Per;
    • Mühleisen, Thomas W;
    • Nöthen, Markus M
    Publication type:
    Article

  • Common variation at 10p12.31 near MLLT10 influences meningioma risk.

    Published in:
    Nature Genetics, 2011, v. 43, n. 9, p. 825, doi. 10.1038/ng.879
    By:
    • Dobbins, Sara E.;
    • Broderick, Peter;
    • Melin, Beatrice;
    • Feychting, Maria;
    • Johansen, Christoffer;
    • Andersson, Ulrika;
    • Brännström, Thomas;
    • Schramm, Johannes;
    • Olver, Bianca;
    • Lloyd, Amy;
    • Ma, Yussanne P;
    • Hosking, Fay J.;
    • Lönn, Stefan;
    • Ahlbom, Anders;
    • Henriksson, Roger;
    • Schoemaker, Minouk J.;
    • Hepworth, Sarah J.;
    • Hoffmann, Per;
    • Mühleisen, Thomas W.;
    • Nöthen, Markus M.
    Publication type:
    Article

  • A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).

    Published in:
    Nature Genetics, 2010, v. 42, n. 12, p. 1126, doi. 10.1038/ng.696
    By:
    • Enciso-Mora, Victor;
    • Broderick, Peter;
    • Ma, Yussanne;
    • Jarrett, Ruth F.;
    • Hjalgrim, Henrik;
    • Hemminki, Kari;
    • Van den Berg, Anke;
    • Olver, Bianca;
    • Lloyd, Amy;
    • Dobbins, Sara E.;
    • Lightfoot, Tracy;
    • Van Leeuwen, Flora E.;
    • Försti, Asta;
    • Diepstra, Arjan;
    • Broeks, Annegien;
    • Vijayakrishnan, Jayaram;
    • Shield, Lesley;
    • Lake, Annette;
    • Montgomery, Dorothy;
    • Roman, Eve
    Publication type:
    Article

  • Variation in CDKN2A at 9p21.3 influences childhood acute lymphoblastic leukemia risk.

    Published in:
    Nature Genetics, 2010, v. 42, n. 6, p. 492, doi. 10.1038/ng.585
    By:
    • Sherborne, Amy L.;
    • Hosking, Fay J.;
    • Prasad, Rashmi B.;
    • Kumar, Rajiv;
    • Koehler, Rolf;
    • Vijayakrishnan, Jayaram;
    • Papaemmanuil, Elli;
    • Bartram, Claus R.;
    • Stanulla, Martin;
    • Schrappe, Martin;
    • Gast, Andreas;
    • Dobbins, Sara E.;
    • Ma, Yussanne;
    • Sheridan, Eamonn;
    • Taylor, Malcolm;
    • Kinsey, Sally E.;
    • Lightfoot, Tracey;
    • Roman, Eve;
    • Irving, Julie A. E.;
    • Allan, James M.
    Publication type:
    Article

  • A somatic reference standard for cancer genome sequencing.

    Published in:
    Scientific Reports, 2016, p. 24607, doi. 10.1038/srep24607
    By:
    • Craig, David W.;
    • Nasser, Sara;
    • Corbett, Richard;
    • Chan, Simon K.;
    • Murray, Lisa;
    • Legendre, Christophe;
    • Tembe, Waibhav;
    • Adkins, Jonathan;
    • Kim, Nancy;
    • Wong, Shukmei;
    • Baker, Angela;
    • Enriquez, Daniel;
    • Pond, Stephanie;
    • Pleasance, Erin;
    • Mungall, Andrew J.;
    • Moore, Richard A.;
    • McDaniel, Timothy;
    • Ma, Yussanne;
    • Jones, Steven J. M.;
    • Marra, Marco A.
    Publication type:
    Article

  • JAGuaR: Junction Alignments to Genome for RNA-Seq Reads.

    Published in:
    PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102398
    By:
    • Butterfield, Yaron S.;
    • Kreitzman, Maayan;
    • Thiessen, Nina;
    • Corbett, Richard D.;
    • Li, Yisu;
    • Pang, Johnson;
    • Ma, Yussanne P.;
    • Jones, Steven J. M.;
    • Birol, İnanç
    Publication type:
    Article

  • IMMU-03. TUMOR NECROSIS FACTOR OVERCOMES IMMUNE EVASION IN P53-MUTANT MEDULLOBLASTOMA.

    Published in:
    Neuro-Oncology, 2019, v. 21, p. ii93, doi. 10.1093/neuonc/noz036.124
    By:
    • Garancher, Alexandra;
    • Suzuki, Hiromichi;
    • Haricharan, Svasti;
    • Masihi, Meher Beigi;
    • Rusert, Jessica M;
    • Norris, Paula S;
    • Carrette, Florent;
    • Romero, Megan M;
    • Morrissy, Sorana A;
    • Skowron, Patryk;
    • Cavalli, Florence M.G.;
    • Farooq, Hamza;
    • Ramaswamy, Vijay;
    • Jones, Steven J.M.;
    • Moore, Richard A;
    • Mungall, Andrew J;
    • Ma, Yussanne;
    • Thiessen, Nina;
    • Li, Yisu;
    • Morcavallo, Alaide
    Publication type:
    Article

  • Application of a Neural Network Whole Transcriptome–Based Pan-Cancer Method for Diagnosis of Primary and Metastatic Cancers.

    Published in:
    JAMA Network Open, 2019, v. 2, n. 4, p. e192597, doi. 10.1001/jamanetworkopen.2019.2597
    By:
    • Grewal, Jasleen K.;
    • Tessier-Cloutier, Basile;
    • Jones, Martin;
    • Gakkhar, Sitanshu;
    • Ma, Yussanne;
    • Moore, Richard;
    • Mungall, Andrew J.;
    • Zhao, Yongjun;
    • Taylor, Michael D.;
    • Gelmon, Karen;
    • Lim, Howard;
    • Renouf, Daniel;
    • Laskin, Janessa;
    • Marra, Marco;
    • Yip, Stephen;
    • Jones, Steven J. M.
    Publication type:
    Article

  • Genomic analyses identify recurrent MEF2D fusions in acute lymphoblastic leukaemia.

    Published in:
    Nature Communications, 2016, v. 7, n. 11, p. 13331, doi. 10.1038/ncomms13331
    By:
    • Gu, Zhaohui;
    • Churchman, Michelle;
    • Roberts, Kathryn;
    • Li, Yongjin;
    • Liu, Yu;
    • Harvey, Richard C.;
    • McCastlain, Kelly;
    • Reshmi, Shalini C.;
    • Payne-Turner, Debbie;
    • Iacobucci, Ilaria;
    • Shao, Ying;
    • Chen, I-Ming;
    • Valentine, Marcus;
    • Pei, Deqing;
    • Mungall, Karen L.;
    • Mungall, Andrew J.;
    • Ma, Yussanne;
    • Moore, Richard;
    • Marra, Marco;
    • Stonerock, Eileen
    Publication type:
    Article

  • Rare disruptive mutations and their contribution to the heritable risk of colorectal cancer.

    Published in:
    Nature Communications, 2016, v. 7, n. 6, p. 11883, doi. 10.1038/ncomms11883
    By:
    • Chubb, Daniel;
    • Broderick, Peter;
    • Dobbins, Sara E.;
    • Frampton, Matthew;
    • Kinnersley, Ben;
    • Penegar, Steven;
    • Price, Amy;
    • Ma, Yussanne P.;
    • Sherborne, Amy L.;
    • Palles, Claire;
    • Timofeeva, Maria N.;
    • Bishop, D. Timothy;
    • Dunlop, Malcolm G.;
    • Tomlinson, Ian;
    • Houlston, Richard S.
    Publication type:
    Article

  • MLLT1 YEATS domain mutations in clinically distinctive Favourable Histology Wilms tumours.

    Published in:
    Nature Communications, 2015, v. 6, n. 12, p. 10013, doi. 10.1038/ncomms10013
    By:
    • Perlman, Elizabeth J.;
    • Gadd, Samantha;
    • Arold, Stefan T.;
    • Radhakrishnan, Anand;
    • Gerhard, Daniela S.;
    • Jennings, Lawrence;
    • Huff, Vicki;
    • Guidry Auvil, Jaime M.;
    • Davidsen, Tanja M.;
    • Dome, Jeffrey S.;
    • Meerzaman, Daoud;
    • Hsu, Chih Hao;
    • Nguyen, Cu;
    • Anderson, James;
    • Ma, Yussanne;
    • Mungall, Andrew J.;
    • Moore, Richard A.;
    • Marra, Marco A.;
    • Mullighan, Charles G.;
    • Ma, Jing
    Publication type:
    Article

  • Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing.

    Published in:
    BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3900-6
    By:
    • Haile, Simon;
    • Corbett, Richard D.;
    • MacLeod, Tina;
    • Bilobram, Steve;
    • Smailus, Duane;
    • Tsao, Philip;
    • Kirk, Heather;
    • McDonald, Helen;
    • Pandoh, Pawan;
    • Bala, Miruna;
    • Hirst, Martin;
    • Miller, Diane;
    • Moore, Richard A.;
    • Mungall, Andrew J.;
    • Schein, Jacquie;
    • Coope, Robin J.;
    • Ma, Yussanne;
    • Yongjun Zhao;
    • Holt, Rob A.;
    • Jones, Steven J.
    Publication type:
    Article

  • Whole genome and whole transcriptome genomic profiling of a metastatic eccrine porocarcinoma.

    Published in:
    NPJ Precision Oncology, 2018, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41698-018-0050-5
    By:
    • Thibodeau, My Linh;
    • Bonakdar, Melika;
    • Zhao, Eric;
    • Mungall, Karen L.;
    • Reisle, Caralyn;
    • Zhang, Wei;
    • Bye, Morgan H.;
    • Thiessen, Nina;
    • Bleile, Dustin;
    • Mungall, Andrew J.;
    • Ma, Yussanne P.;
    • Jones, Martin R.;
    • Renouf, Daniel J.;
    • Lim, Howard J.;
    • Yip, Stephen;
    • Ng, Tony;
    • Ho, Cheryl;
    • Laskin, Janessa;
    • Marra, Marco A.;
    • Schrader, Kasmintan A.
    Publication type:
    Article

  • Chromosome 7p11.2 (EGFR) variation influences glioma risk.

    Published in:
    Human Molecular Genetics, 2011, v. 20, n. 14, p. 2897, doi. 10.1093/hmg/ddr192
    By:
    • Sanson, Marc;
    • Hosking, Fay J.;
    • Shete, Sanjay;
    • Zelenika, Diana;
    • Dobbins, Sara E.;
    • Ma, Yussanne;
    • Enciso-Mora, Victor;
    • Idbaih, Ahmed;
    • Delattre, Jean-Yves;
    • Hoang-Xuan, Khe;
    • Marie, Yannick;
    • Boisselier, Blandine;
    • Carpentier, Catherine;
    • Wang, Xiao-Wei;
    • Di Stefano, Anna Luisa;
    • Labussière, Marianne;
    • Gousias, Konstantinos;
    • Schramm, Johannes;
    • Boland, Anne;
    • Lechner, Doris
    Publication type:
    Article

  • The silent mutational landscape of infant MLL-AF4 pro-B acute lymphoblastic leukemia.

    Published in:
    Genes, Chromosomes & Cancer, 2013, v. 52, n. 10, p. 954, doi. 10.1002/gcc.22090
    By:
    • Dobbins, Sara E.;
    • Sherborne, Amy L.;
    • Ma, Yussanne P.;
    • Bardini, Michela;
    • Biondi, Andrea;
    • Cazzaniga, Giovanni;
    • Lloyd, Amy;
    • Chubb, Daniel;
    • Greaves, Mel F.;
    • Houlston, Richard S.
    Publication type:
    Article

  • Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples.

    Published in:
    Nucleic Acids Research, 2019, v. 47, n. 2, p. e12, doi. 10.1093/nar/gky1142
    By:
    • Haile, Simon;
    • Corbett, Richard D;
    • Bilobram, Steve;
    • Bye, Morgan H;
    • Kirk, Heather;
    • Pandoh, Pawan;
    • Trinh, Eva;
    • MacLeod, Tina;
    • McDonald, Helen;
    • Bala, Miruna;
    • Miller, Diane;
    • Novik, Karen;
    • Coope, Robin J;
    • Moore, Richard A;
    • Zhao, Yongjun;
    • Mungall, Andrew J;
    • Ma, Yussanne;
    • Holt, Rob A;
    • Jones, Steven J;
    • Marra, Marco A
    Publication type:
    Article

  • Fine-scale mapping of the 6p25.3 chronic lymphocytic leukaemia susceptibility locus.

    Published in:
    Human Molecular Genetics, 2010, v. 19, n. 9, p. 1840, doi. 10.1093/hmg/ddq044
    By:
    • Crowther-Swanepoel, Dalemari;
    • Broderick, Peter;
    • Ma, Yussanne;
    • Robertson, Lindsay;
    • Pittman, Alan M.;
    • Price, Amy;
    • Twiss, Philip;
    • Vijayakrishnan, Jayaram;
    • Qureshi, Mobshra;
    • Dyer, Martin J. S.;
    • Matutes, Estella;
    • Dearden, Claire;
    • Catovsky, Daniel;
    • Houlston, Richard S.
    Publication type:
    Article

  • Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers.

    Published in:
    Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48363-5
    By:
    • Deyell, Rebecca J.;
    • Shen, Yaoqing;
    • Titmuss, Emma;
    • Dixon, Katherine;
    • Williamson, Laura M.;
    • Pleasance, Erin;
    • Nelson, Jessica M. T.;
    • Abbasi, Sanna;
    • Krzywinski, Martin;
    • Armstrong, Linlea;
    • Bonakdar, Melika;
    • Ch'ng, Carolyn;
    • Chuah, Eric;
    • Dunham, Chris;
    • Fok, Alexandra;
    • Jones, Martin;
    • Lee, Anna F.;
    • Ma, Yussanne;
    • Moore, Richard A.;
    • Mungall, Andrew J.
    Publication type:
    Article

  • Genomic and Cytogenetic Characterization of a Balanced Translocation Disrupting NUP98.

    Published in:
    Cytogenetic & Genome Research, 2017, v. 152, n. 3, p. 117, doi. 10.1159/000479463
    By:
    • Thibodeau, My Linh;
    • Steinraths, Michelle;
    • Brown, Lindsay;
    • Zong, Zheyuan;
    • Shomer, Naomi;
    • Taubert, Stefan;
    • Mungall, Karen L.;
    • Ma, Yussanne P.;
    • Mueller, Rosemary;
    • Birol, Inanc;
    • Lehman, anna
    Publication type:
    Article

  • MAVIS: merging, annotation, validation, and illustration of structural variants.

    Published in:
    Bioinformatics, 2019, v. 35, n. 3, p. 515, doi. 10.1093/bioinformatics/bty621
    By:
    • Reisle, Caralyn;
    • Mungall, Karen L;
    • Choo, Caleb;
    • Paulino, Daniel;
    • Bleile, Dustin W;
    • Muhammadzadeh, Amir;
    • Mungall, Andrew J;
    • Moore, Richard A;
    • Shlafman, Inna;
    • Coope, Robin;
    • Pleasance, Stephen;
    • Ma, Yussanne;
    • Jones, Steven J M
    Publication type:
    Article

  • Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis.

    Published in:
    PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0178706
    By:
    • Haile, Simon;
    • Pandoh, Pawan;
    • McDonald, Helen;
    • Corbett, Richard D.;
    • Tsao, Philip;
    • Kirk, Heather;
    • MacLeod, Tina;
    • Jones, Martin;
    • Bilobram, Steve;
    • Brooks, Denise;
    • Smailus, Duane;
    • Steidl, Christian;
    • Scott, David W.;
    • Bala, Miruna;
    • Hirst, Martin;
    • Miller, Diane;
    • Moore, Richard A.;
    • Mungall, Andrew J.;
    • Coope, Robin J.;
    • Ma, Yussanne
    Publication type:
    Article