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Insights Into the Allosteric Inhibition of the SUMO E2 Enzyme Ubc9.
- Published in:
- Angewandte Chemie, 2016, v. 128, n. 19, p. 5797, doi. 10.1002/ange.201511351
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- Article
Local and global anatomy of antibody‐protein antigen recognition.
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- Journal of Molecular Recognition, 2018, v. 31, n. 5, p. 1, doi. 10.1002/jmr.2693
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- Article
Visualizing RNA conformational and architectural heterogeneity in solution.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36184-x
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- Article
Insights Into the Allosteric Inhibition of the SUMO E2 Enzyme Ubc9.
- Published in:
- Angewandte Chemie International Edition, 2016, v. 55, n. 19, p. 5703, doi. 10.1002/anie.201511351
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- Publication type:
- Article
Single Mutations in Tau Modulate the Populations of Fibril Conformers through Seed Selection.
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- Angewandte Chemie International Edition, 2014, v. 53, n. 6, p. 1590, doi. 10.1002/anie.201308473
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- Article
Multiple-Targeting and Conformational Selection in the Estrogen Receptor: Computation and Experiment.
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- Chemical Biology & Drug Design, 2011, v. 78, n. 1, p. 137, doi. 10.1111/j.1747-0285.2011.01119.x
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- Article
Bioinformatics Study of Cancer-Related Mutations within p53 Phosphorylation Site Motifs.
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- International Journal of Molecular Sciences, 2014, v. 15, n. 8, p. 13275, doi. 10.3390/ijms150813275
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- Article
Computational Construction of a Single-Chain Bi-Paratopic Antibody Allosterically Inhibiting TCR-Staphylococcal Enterotoxin B Binding.
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- Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.732938
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- Article
Probing potential binding modes of the p53 tetramer to DNA based on the symmetries encoded in p53 response elements.
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- Nucleic Acids Research, 2007, v. 35, n. 22, p. 7733, doi. 10.1093/nar/gkm890
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- Article
Sequence analysis of p53 response-elements suggests multiple binding modes of the p53 tetramer to DNA targets.
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- Nucleic Acids Research, 2007, v. 35, n. 9, p. 2986, doi. 10.1093/nar/gkm192
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- Article
Aβ(1-42) fibril structure illuminates self-recognition and replication of amyloid in Alzheimer's disease.
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- Nature Structural & Molecular Biology, 2015, v. 22, n. 6, p. 499, doi. 10.1038/nsmb.2991
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- Article
How do transcription factors select specific binding sites in the genome?
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- Nature Structural & Molecular Biology, 2009, v. 16, n. 11, p. 1118, doi. 10.1038/nsmb1109-1118
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- Publication type:
- Article
Single Mutations in Tau Modulate the Populations of Fibril Conformers through Seed Selection.
- Published in:
- Angewandte Chemie, 2014, v. 126, n. 6, p. 1616, doi. 10.1002/ange.201308473
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- Publication type:
- Article
Oncogenic Mutations Differentially Affect Bax Monomer, Dimer, and Oligomeric Pore Formation in the Membrane.
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- Scientific Reports, 2016, p. 33340, doi. 10.1038/srep33340
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- Article
Molecular mechanics calculations (MM3) on nitriles and alkynes.
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- Journal of Physical Organic Chemistry, 1996, v. 9, n. 4, p. 191, doi. 10.1002/(SICI)1099-1395(199604)9:4<191::AID-POC765>3.0.CO;2-9
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- Article
Cooperativity among Short Amyloid Stretches in Long Amyloidogenic Sequences.
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- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039369
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- Article
Is allostery an intrinsic property of all dynamic proteins?
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- Proteins, 2004, v. 57, n. 3, p. 433, doi. 10.1002/prot.20232
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- Article
Principles of docking: An overview of search algorithms and a guide to scoring functions.
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- Proteins, 2002, v. 47, n. 4, p. 409, doi. 10.1002/prot.10115
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- Publication type:
- Article
Thermal unfolding molecular dynamics simulation of Escherichia coli dihydrofolate reductase: Thermal stability of protein domains and unfolding pathway.
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- Proteins, 2002, v. 46, n. 3, p. 308, doi. 10.1002/prot.10040
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- Article
Structured disorder and conformational selection.
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- Proteins, 2001, v. 44, n. 4, p. 418, doi. 10.1002/prot.1107
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- Article
Conservation of polar residues as hot spots at protein interfaces.
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- Proteins, 2000, v. 39, n. 4, p. 331, doi. 10.1002/(SICI)1097-0134(20000601)39:4<331::AID-PROT60>3.0.CO;2-A
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- Article
Electrostatic strengths of salt bridges in thermophilic and mesophilic glutamate dehydrogenase monomers.
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- Proteins, 2000, v. 38, n. 4, p. 368, doi. 10.1002/(SICI)1097-0134(20000301)38:4<368::AID-PROT3>3.0.CO;2-R
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- Publication type:
- Article
Explicit and implicit water simulations of a β-hairpin peptide.
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- Proteins, 1999, v. 37, n. 1, p. 73, doi. 10.1002/(SICI)1097-0134(19991001)37:1<73::AID-PROT8>3.0.CO;2-Z
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- Publication type:
- Article
Protein charge and mass contribute to the spatio-temporal dynamics of protein-protein interactions in a minimal proteome.
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- Proteomics, 2013, v. 13, n. 8, p. 1339, doi. 10.1002/pmic.201100540
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- Publication type:
- Article
Fewer Dimensions, More Structures for Improved Discrete Models of Dynamics of Free versus Antigen-Bound Antibody.
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- Biomolecules (2218-273X), 2022, v. 12, n. 7, p. N.PAG, doi. 10.3390/biom12071011
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- Article
Binding interactions between the core central domain of 16S rRNA and the ribosomal protein S15 determined by molecular dynamics simulations.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 2, p. 629
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- Article
Binding and folding: in search of intramolecular chaperone-like building block fragments.
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- Protein Engineering, 2000, v. 13, n. 9, p. 617, doi. 10.1093/protein/13.9.617
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- Article
Precision Therapy of Recurrent Breast Cancer through Targeting Different Malignant Tumor Cells with a HER2/CD44‐Targeted Hydrogel Nanobot.
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- Small, 2023, v. 19, n. 37, p. 1, doi. 10.1002/smll.202301043
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- Publication type:
- Article
Conformational stability and dynamics of the cancer-associated isoform Δ133p53β are modulated by p53 peptides and p53-specific DNA.
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- FASEB Journal, 2019, v. 33, n. 3, p. 4225, doi. 10.1096/fj.201801973R
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- Article
Nuclease activity gives an edge to host-defense peptide piscidin 3 over piscidin 1, rendering it more effective against persisters and biofilms.
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- FEBS Journal, 2017, v. 284, n. 21, p. 3662, doi. 10.1111/febs.14263
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- Article
Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary Algorithm.
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- PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004470
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- Article
Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR.
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- PLoS Computational Biology, 2007, v. 3, n. 6, p. e117, doi. 10.1371/journal.pcbi.0030117
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- Article
Protein dynamics and conformational selection in bidirectional signal transduction.
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- BMC Biology, 2012, v. 10, n. 1, p. 1, doi. 10.1186/1741-7007-10-2
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- Article
Evaluation of Molecular Simulations and Deep Learning Prediction of Antibodies' Recognition of TRBC1 and TRBC2.
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- Antibodies (2073-4468), 2023, v. 12, n. 3, p. 58, doi. 10.3390/antib12030058
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- Article
Recent Progress in Antibody Epitope Prediction.
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- Antibodies (2073-4468), 2023, v. 12, n. 3, p. 52, doi. 10.3390/antib12030052
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- Publication type:
- Article
Trastuzumab Blocks the Receiver Function of HER2 Leading to the Population Shifts of HER2-Containing Homodimers and Heterodimers.
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- Antibodies (2073-4468), 2021, v. 10, n. 1, p. 7, doi. 10.3390/antib10010007
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- Publication type:
- Article
Molecular Recognition between Aβ-Specific Single-Domain Antibody and Aβ Misfolded Aggregates.
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- Antibodies (2073-4468), 2018, v. 7, n. 3, p. 25, doi. 10.3390/antib7030025
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- Article
In Silico Methods in Antibody Design.
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- Antibodies (2073-4468), 2018, v. 7, n. 3, p. 22, doi. 10.3390/antib7030022
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- Publication type:
- Article
Allosteric control of antibody-prion recognition through oxidation of a disulfide bond between the CH and CL chains.
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- PEDS: Protein Engineering, Design & Selection, 2017, v. 30, n. 1, p. 67, doi. 10.1093/protein/gzw065
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- Publication type:
- Article
Conformational dynamics of cancer-associated MyD88-TIR domain mutant L252P (L265P) allosterically tilts the landscape toward homo-dimerization.
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- PEDS: Protein Engineering, Design & Selection, 2016, v. 29, n. 9, p. 347, doi. 10.1093/protein/gzw033
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- Article
Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics.
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- PLoS Computational Biology, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004619
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- Article
Molecular polarizabilities and induced dipole moments in molecular mechanics.
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- Journal of Computational Chemistry, 2000, v. 21, n. 10, p. 813, doi. 10.1002/1096-987X(20000730)21:10<813::AID-JCC1>3.0.CO;2-T
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- Publication type:
- Article
Importance of selecting proper basis set in quantum mechanical studies of potential energy surfaces of carbohydrates.
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- Journal of Computational Chemistry, 1999, v. 20, n. 15, p. 1593, doi. 10.1002/(SICI)1096-987X(19991130)20:15<1593::AID-JCC1>3.0.CO;2-A
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- Article
Architectural basis for cylindrical self-assembly governing Plk4-mediated centriole duplication in human cells.
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- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05067-8
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- Article
Author Correction: Architectural basis for cylindrical self-assembly governing Plk4-mediated centriole duplication in human cells.
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- 2023
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- Publication type:
- Correction Notice
Architectural basis for cylindrical self-assembly governing Plk4-mediated centriole duplication in human cells.
- Published in:
- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05067-8
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- Publication type:
- Article
In silico protein design by combinatorial assembly of protein building blocks.
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- Protein Science: A Publication of the Protein Society, 2004, v. 13, n. 10, p. 2753, doi. 10.1110/ps.04774004
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- Publication type:
- Article
Energy landscape and dynamics of the β-hairpin G peptide and its isomers: Topology and sequences.
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- Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 9, p. 1882, doi. 10.1110/ps.0306103
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- Publication type:
- Article
Molecular dynamics simulations of alanine rich β-sheet oligomers: Insight into amyloid formation.
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- Protein Science: A Publication of the Protein Society, 2002, v. 11, n. 10, p. 2335, doi. 10.1110/ps.4270102
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- Article
Multiple diverse ligands binding at a single protein site: A matter of pre-existing populations.
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- Protein Science: A Publication of the Protein Society, 2002, v. 11, n. 2, p. 184, doi. 10.1110/ps.21302
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- Publication type:
- Article