Works by MOULTON, VINCENT

Results: 99

Squirrel: Reconstructing Semi-directed Phylogenetic Level-1 Networks from Four-Leaved Networks or Sequence Alignments.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf067

By:

Holtgrefe, Niels;
Huber, Katharina T;
Iersel, Leo van;
Jones, Mark;
Martin, Samuel;
Moulton, Vincent

Publication type:

Article

IDENTIFYING AND RECONSTRUCTING LATERAL TRANSFERS FROM DISTANCE MATRICES BY COMBINING THE MINIMUM CONTRADICTION METHOD AND NEIGHBOR-NET.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. 453, doi. 10.1142/S0219720011005409

By:

THUILLARD, MARC;
MOULTON, VINCENT

Publication type:

Article

Maximal Energy Bipartite Graphs.

Published in:

Graphs & Combinatorics, 2003, v. 19, n. 1, p. 131, doi. 10.1007/s00373-002-0487-7

By:

Koolen, Jack H.;
Moulton, Vincent

Publication type:

Article

RNAbor: a web server for RNA structural neighbors.

Published in:

Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W305, doi. 10.1093/nar/gkm255

By:

Freyhult, Eva;
Moulton, Vincent;
Clote, Peter

Publication type:

Article

Visualizing bacterial tRNA identity determinants and antideterminants using function logos and inverse function logos.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 3, p. 905, doi. 10.1093/nar/gkj478

By:

Freyhult, Eva;
Moulton, Vincent;
Ardell, David H.

Publication type:

Article

A novel stratification framework for predicting outcome in patients with prostate cancer.

Published in:

2020

By:

Luca, Bogdan-Alexandru;
Moulton, Vincent;
Ellis, Christopher;
Edwards, Dylan R.;
Campbell, Colin;
Cooper, Rosalin A.;
Clark, Jeremy;
Brewer, Daniel S.;
Cooper, Colin S.

Publication type:

journal article

RNA Folding Argues Against a Hot-Start Origin of Life.

Published in:

Journal of Molecular Evolution, 2000, v. 51, n. 4, p. 416, doi. 10.1007/s002390010104

By:

Moulton, Vincent;
Gardner, Paul P.;
Pointon, Robert F.;
Creamer, Lawrence K.;
Jameson, Geoffrey B.;
Penny, David

Publication type:

Article

Use of RNA Secondary Structure for Studying the Evolution of RNase P and RNase MRP.

Published in:

Journal of Molecular Evolution, 2000, v. 51, n. 3, p. 194, doi. 10.1007/s002390010081

By:

Collins, Lesley J.;
Moulton, Vincent;
Penny, David

Publication type:

Article

Three-Way Symbolic Tree-Maps and Ultrametrics.

Published in:

Journal of Classification, 2019, v. 36, n. 3, p. 513, doi. 10.1007/s00357-018-9274-x

By:

Huber, Katharina T.;
Moulton, Vincent;
Scholz, Guillaume E.

Publication type:

Article

Hierarchies from Lowest Stable Ancestors in Nonbinary Phylogenetic Networks.

Published in:

Journal of Classification, 2019, v. 36, n. 2, p. 200, doi. 10.1007/s00357-018-9279-5

By:

Huber, Katharina T.;
Moulton, Vincent;
Wu, Taoyang

Publication type:

Article

Recognizing Treelike k-Dissimilarities.

Published in:

Journal of Classification, 2012, v. 29, n. 3, p. 321, doi. 10.1007/s00357-012-9115-2

By:

Herrmann, Sven;
Huber, Katharina;
Moulton, Vincent;
Spillner, Andreas

Publication type:

Article

An Algorithm for Computing Cutpoints in Finite Metric Spaces.

Published in:

Journal of Classification, 2010, v. 27, n. 2, p. 158, doi. 10.1007/s00357-010-9055-7

By:

Dress, Andreas;
Huber, Katharina T.;
Koolen, Jacobus;
Moulton, Vincent;
Spillner, Andreas

Publication type:

Article

Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 901, doi. 10.1186/1471-2164-15-901

By:

Toseland, Andrew;
Moxon, Simon;
Mock, Thomas;
Moulton, Vincent

Publication type:

Article

Global discovery and characterization of small non-coding RNAs in marine microalgae.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 697, doi. 10.1186/1471-2164-15-697

By:

Lopez-Gomollon, Sara;
Beckers, Matthew;
Rathjen, Tina;
Moxon, Simon;
Maumus, Florian;
Mohorianu, Irina;
Moulton, Vincent;
Dalmay, Tamas;
Mock, Thomas

Publication type:

Article

Using supernetworks to distinguish hybridization from lineage-sorting.

Published in:

BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-202

By:

Holland, Barbara R.;
Benthin, Steffi;
Lockhart, Peter J.;
Moulton, Vincent;
Huber, Katharina T.

Publication type:

Article

Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions.

Published in:

Planta: An International Journal of Plant Biology, 2012, v. 236, n. 6, p. 1875, doi. 10.1007/s00425-012-1734-7

By:

Lopez-Gomollon, Sara;
Mohorianu, Irina;
Szittya, Gyorgy;
Moulton, Vincent;
Dalmay, Tamas

Publication type:

Article

Identification of novel small RNAs in tomato ( Solanum lycopersicum).

Published in:

Planta: An International Journal of Plant Biology, 2007, v. 226, n. 3, p. 709, doi. 10.1007/s00425-007-0518-y

By:

Pilcher, Rachel L. Rusholme;
Moxon, Simon;
Pakseresht, Nima;
Moulton, Vincent;
Manning, Kenneth;
Seymour, Graham;
Dalmay, Tamas

Publication type:

Article

Evolution through segmental duplications and losses: a Super-Reconciliation approach.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00171-4

By:

Delabre, Mattéo;
El-Mabrouk, Nadia;
Huber, Katharina T.;
Lafond, Manuel;
Moulton, Vincent;
Noutahi, Emmanuel;
Castellanos, Miguel Sautie

Publication type:

Article

TriLoNet: Piecing Together Small Networks to Reconstruct Reticulate Evolutionary Histories.

Published in:

Molecular Biology & Evolution, 2016, v. 33, n. 8, p. 2151, doi. 10.1093/molbev/msw068

By:

Oldman, James;
Taoyang Wu;
van Iersel, Leo;
Moulton, Vincent

Publication type:

Article

Deciphering the diversity of small RNAs in plants: the long and short of it.

Published in:

Briefings in Functional Genomics & Proteomics, 2009, v. 8, n. 6, p. 472, doi. 10.1093/bfgp/elp024

By:

Schwach, Frank;
Moxon, Simon;
Moulton, Vincent;
Dalmay, Tamas

Publication type:

Article

A distance-based model for convergent evolution.

Published in:

Journal of Mathematical Biology, 2024, v. 88, n. 2, p. 1, doi. 10.1007/s00285-023-02038-9

By:

Holland, Barbara;
Huber, Katharina T.;
Moulton, Vincent

Publication type:

Article

The rigid hybrid number for two phylogenetic trees.

Published in:

Journal of Mathematical Biology, 2021, v. 82, n. 5, p. 1, doi. 10.1007/s00285-021-01594-2

By:

Huber, Katharina T.;
Linz, Simone;
Moulton, Vincent

Publication type:

Article

Reconciling event-labeled gene trees with MUL-trees and species networks.

Published in:

Journal of Mathematical Biology, 2019, v. 79, n. 5, p. 1885, doi. 10.1007/s00285-019-01414-8

By:

Hellmuth, Marc;
Huber, Katharina T.;
Moulton, Vincent

Publication type:

Article

Recovering normal networks from shortest inter-taxa distance information.

Published in:

Journal of Mathematical Biology, 2018, v. 77, n. 3, p. 571, doi. 10.1007/s00285-018-1218-x

By:

Bordewich, Magnus;
Huber, Katharina T.;
Moulton, Vincent;
Semple, Charles

Publication type:

Article

Bounds for phylogenetic network space metrics.

Published in:

Journal of Mathematical Biology, 2018, v. 76, n. 5, p. 1229, doi. 10.1007/s00285-017-1171-0

By:

Francis, Andrew;
Huber, Katharina T.;
Moulton, Vincent;
Wu, Taoyang

Publication type:

Article

Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks.

Published in:

Bulletin of Mathematical Biology, 2019, v. 81, n. 10, p. 3823, doi. 10.1007/s11538-019-00641-w

By:

Murakami, Yukihiro;
van Iersel, Leo;
Janssen, Remie;
Jones, Mark;
Moulton, Vincent

Publication type:

Article

Phylogenetic Flexibility via Hall-Type Inequalities and Submodularity.

Published in:

Bulletin of Mathematical Biology, 2019, v. 81, n. 2, p. 598, doi. 10.1007/s11538-018-0419-1

By:

Huber, Katharina T.;
Moulton, Vincent;
Steel, Mike

Publication type:

Article

Quarnet Inference Rules for Level-1 Networks.

Published in:

Bulletin of Mathematical Biology, 2018, v. 80, n. 8, p. 2137, doi. 10.1007/s11538-018-0450-2

By:

Huber, Katharina T.;
Moulton, Vincent;
Semple, Charles;
Wu, Taoyang

Publication type:

Article

Binets: Fundamental Building Blocks for Phylogenetic Networks.

Published in:

Bulletin of Mathematical Biology, 2017, v. 79, n. 5, p. 1135, doi. 10.1007/s11538-017-0275-4

By:

Iersel, Leo;
Moulton, Vincent;
Swart, Eveline;
Wu, Taoyang

Publication type:

Article

Erratum to: Neighborhoods of Trees in Circular Orderings.

Published in:

2015

By:

Bastkowski, Sarah;
Moulton, Vincent;
Spillner, Andreas;
Wu, Taoyang

Publication type:

Erratum

Neighborhoods of Trees in Circular Orderings.

Published in:

Bulletin of Mathematical Biology, 2015, v. 77, n. 1, p. 46, doi. 10.1007/s11538-014-0049-1

By:

Baskowski, Sarah;
Moulton, Vincent;
Spillner, Andreas;
Wu, Taoyang

Publication type:

Article

FiRePat-Finding Regulatory Patterns between sRNAs and Genes.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2012, v. 2, n. 3, p. 273, doi. 10.1002/widm.1053

By:

Mohorianu, Irina;
Lopez-Gomollon, Sara;
Schwach, Frank;
Dalmay, Tamas;
Moulton, Vincent

Publication type:

Article

MirPlex: A Tool for Identifying miRNAs in High-Throughput sRNA Datasets Without a Genome.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2013, v. 320, n. 1, p. 47, doi. 10.1002/jez.b.22483

By:

MAPLESON, DANIEL;
MOXON, SIMON;
DALMAY, TAMAS;
MOULTON, VINCENT

Publication type:

Article

MirPlex: A Tool for Identifying miRNAs in High-Throughput sRNA Datasets Without a Genome MirPlex: A Tool for Identifying miRNAs in High-Throughput sRNA Datasets Without a Genome.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2013, v. 320, n. 1, p. 47, doi. 10.1002/jez.b.22483

By:

Mapleson, Daniel;
Moxon, Simon;
Dalmay, Tamas;
Moulton, Vincent

Publication type:

Article

The Space of Equidistant Phylogenetic Cactuses.

Published in:

Annals of Combinatorics, 2024, v. 28, n. 1, p. 1, doi. 10.1007/s00026-023-00656-0

By:

Huber, Katharina T.;
Moulton, Vincent;
Owen, Megan;
Spillner, Andreas;
St. John, Katherine

Publication type:

Article

Hereditarily Optimal Realizations of Consistent Metrics.

Published in:

Annals of Combinatorics, 2006, v. 10, n. 1, p. 63, doi. 10.1007/s00026-006-0274-x

By:

Dress, Andreas;
Huber, Katharina T.;
Lesser, Alice;
Moulton, Vincent

Publication type:

Article

Preface.

Published in:

Annals of Combinatorics, 2006, v. 10, n. 1, p. I, doi. 10.1007/s00026-006-0000-8

By:

Moulton, Vincent

Publication type:

Article

4n- 10.

Published in:

Annals of Combinatorics, 2005, v. 8, n. 4, p. 463, doi. 10.1007/s00026-004-0233-3

By:

Dress, Andreas W. M.;
Koolen, Jack;
Moulton, Vincent

Publication type:

Article

OSF-Builder: A New Tool for Constructing and Representing Evolutionary Histories Involving Introgression.

Published in:

Systematic Biology, 2019, v. 68, n. 5, p. 717, doi. 10.1093/sysbio/syz004

By:

Scholz, Guillaume E;
Popescu, Andrei-Alin;
Taylor, Martin I;
Moulton, Vincent;
Huber, Katharina T

Publication type:

Article

Exploring and Visualizing Spaces of Tree Reconciliations.

Published in:

Systematic Biology, 2019, v. 68, n. 4, p. 607, doi. 10.1093/sysbio/syy075

By:

Huber, Katharina T;
Moulton, Vincent;
Sagot, Marie-France;
Sinaimeri, Blerina

Publication type:

Article

How Much Information is Needed to Infer Reticulate Evolutionary Histories?

Published in:

Systematic Biology, 2015, v. 64, n. 1, p. 102, doi. 10.1093/sysbio/syu076

By:

Huber, Katharina T.;
Van Iersel, Leo;
Moulton, Vincent;
Wu, Taoyang

Publication type:

Article

FlatNJ: A Novel Network-Based Approach to Visualize Evolutionary and Biogeographical Relationships.

Published in:

Systematic Biology, 2014, v. 63, n. 3, p. 383

By:

Balvočūtė, Monika;
Spillner, Andreas;
Moulton, Vincent

Publication type:

Article

Novel Distances for Dollo Data.

Published in:

Systematic Biology, 2013, v. 62, n. 1, p. 62, doi. 10.1093/sysbio/sys071

By:

WOODHAMS, MICHAEL;
STEANE, DOROTHY A.;
JONES, REBECCA C.;
NICOLLE, DEAN;
MOULTON, VINCENT;
HOLLAND, BARBARA R.

Publication type:

Article

Untangling Complex Histories of Genome Mergings in High Polyploids.

Published in:

Systematic Biology, 2007, v. 56, n. 3, p. 467, doi. 10.1080/10635150701424553

By:

Brysting, Anne K.;
Oxelman, Bengt;
Huber, Katharina T.;
Moulton, Vincent;
Brochmann, Christian

Publication type:

Article

Biogeographic Interpretation of Splits Graphs: Least Squares Optimization of Branch Lengths.

Published in:

Systematic Biology, 2005, v. 54, n. 1, p. 56, doi. 10.1080/10635150590906046

By:

Winkworth, Richard;
Bryant, David;
Lockhart, Peter;
Havell, David;
Moulton, Vincent

Publication type:

Article

Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods.

Published in:

Systematic Biology, 2005, v. 54, n. 1, p. 66, doi. 10.1080/10635150590906055

By:

Holland, Barbara;
xE9;déric#Delsuc, Fr&;
Moulton, Vincent

Publication type:

Article

Diversities and the Generalized Circumradius.

Published in:

Discrete & Computational Geometry, 2023, v. 70, n. 4, p. 1862, doi. 10.1007/s00454-023-00493-1

By:

Bryant, David;
Huber, Katharina T.;
Moulton, Vincent;
Tupper, Paul F.

Publication type:

Article

Concerning the Relationship between Realizations and Tight Spans of Finite Metrics.

Published in:

Discrete & Computational Geometry, 2007, v. 38, n. 3, p. 605, doi. 10.1007/s00454-007-1352-5

By:

Jack Koolen;
Alice Lesser;
Vincent Moulton

Publication type:

Article

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets.

Published in:

Bioinformatics, 2012, v. 28, n. 15, p. 2059, doi. 10.1093/bioinformatics/bts311

By:

Stocks, Matthew B.;
Moxon, Simon;
Mapleson, Daniel;
Woolfenden, Hugh C.;
Mohorianu, Irina;
Folkes, Leighton;
Schwach, Frank;
Dalmay, Tamas;
Moulton, Vincent

Publication type:

Article

RDP3: a flexible and fast computer program for analyzing recombination.

Published in:

Bioinformatics, 2010, v. 26, n. 19, p. 2462, doi. 10.1093/bioinformatics/btq467

By:

Martin, Darren P.;
Lemey, Philippe;
Lott, Martin;
Moulton, Vincent;
Posada, David;
Lefeuvre, Pierre

Publication type:

Article