Works matching AU MOULTON, VINCENT

Results: 99

Bounds for phylogenetic network space metrics.

Published in:

Journal of Mathematical Biology, 2018, v. 76, n. 5, p. 1229, doi. 10.1007/s00285-017-1171-0

By:

Francis, Andrew;
Huber, Katharina T.;
Moulton, Vincent;
Wu, Taoyang

Publication type:

Article

Folding and unfolding phylogenetic trees and networks.

Published in:

Journal of Mathematical Biology, 2016, v. 73, n. 6/7, p. 1761, doi. 10.1007/s00285-016-0993-5

By:

Huber, Katharina;
Moulton, Vincent;
Steel, Mike;
Wu, Taoyang

Publication type:

Article

Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations.

Published in:

Journal of Mathematical Biology, 2016, v. 72, n. 3, p. 699, doi. 10.1007/s00285-015-0899-7

By:

Huber, Katharina;
Linz, Simone;
Moulton, Vincent;
Wu, Taoyang

Publication type:

Article

Trinets encode tree-child and level-2 phylogenetic networks.

Published in:

Journal of Mathematical Biology, 2014, v. 68, n. 7, p. 1707, doi. 10.1007/s00285-013-0683-5

By:

Iersel, Leo;
Moulton, Vincent

Publication type:

Article

Orthology relations, symbolic ultrametrics, and cographs.

Published in:

Journal of Mathematical Biology, 2013, v. 66, n. 1/2, p. 399, doi. 10.1007/s00285-012-0525-x

By:

Hellmuth, Marc;
Hernandez-Rosales, Maribel;
Huber, Katharina;
Moulton, Vincent;
Stadler, Peter;
Wieseke, Nicolas

Publication type:

Article

The 'Butterfly effect' in Cayley graphs with applications to genomics.

Published in:

Journal of Mathematical Biology, 2012, v. 65, n. 6/7, p. 1267, doi. 10.1007/s00285-011-0498-1

By:

Moulton, Vincent;
Steel, Mike

Publication type:

Article

Encoding phylogenetic trees in terms of weighted quartets.

Published in:

Journal of Mathematical Biology, 2008, v. 56, n. 4, p. 465

By:

Stefan GrÃ¼newald;
Katharina Huber;
Vincent Moulton;
Charles Semple

Publication type:

Article

Bounding the Number of Hybridisation Events for a Consistent Evolutionary History.

Published in:

Journal of Mathematical Biology, 2005, v. 51, n. 2, p. 171, doi. 10.1007/s00285-005-0315-9

By:

Mihaela Baroni;
Stefan Grünewald;
Vincent Moulton;
Charles Semple

Publication type:

Article

miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 16, p. 2446, doi. 10.1093/bioinformatics/btx210

By:

Paicu, Claudia;
Mohorianu, Irina;
Stocks, Matthew;
Ping Xu;
Coince, Aurore;
Billmeier, Martina;
Dalmay, Tamas;
Moulton, Vincent;
Moxon, Simon

Publication type:

Article

The minimum evolution problem is hard: a link between tree inference and graph clustering problems.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 518, doi. 10.1093/bioinformatics/btv623

By:

Bastkowski, Sarah;
Moulton, Vincent;
Spillner, Andreas;
Taoyang Wu

Publication type:

Article

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets.

Published in:

Bioinformatics, 2012, v. 28, n. 15, p. 2059, doi. 10.1093/bioinformatics/bts311

By:

Stocks, Matthew B.;
Moxon, Simon;
Mapleson, Daniel;
Woolfenden, Hugh C.;
Mohorianu, Irina;
Folkes, Leighton;
Schwach, Frank;
Dalmay, Tamas;
Moulton, Vincent

Publication type:

Article

RDP3: a flexible and fast computer program for analyzing recombination.

Published in:

Bioinformatics, 2010, v. 26, n. 19, p. 2462, doi. 10.1093/bioinformatics/btq467

By:

Martin, Darren P.;
Lemey, Philippe;
Lott, Martin;
Moulton, Vincent;
Posada, David;
Lefeuvre, Pierre

Publication type:

Article

PADRE: a package for analyzing and displaying reticulate evolution.

Published in:

Bioinformatics, 2009, v. 25, n. 9, p. 1199, doi. 10.1093/bioinformatics/btp133

By:

Martin Lott;
Andreas Spillner;
Katharina T. Huber;
Vincent Moulton

Publication type:

Article

A toolkit for analysing large-scale plant small RNA datasets.

Published in:

Bioinformatics, 2008, v. 24, n. 19, p. 2252, doi. 10.1093/bioinformatics/btn428

By:

Simon Moxon;
Frank Schwach;
Tamas Dalmay;
Dan MacLean;
David J. Studholme;
Vincent Moulton

Publication type:

Article

Boltzmann probability of RNA structural neighbors and riboswitch detection.

Published in:

Bioinformatics, 2007, v. 23, n. 16, p. 2054, doi. 10.1093/bioinformatics/btm314

By:

Eva Freyhult;
Vincent Moulton;
Peter Clote

Publication type:

Article

Genetic and Structural Diversity of Prokaryotic Ice-Binding Proteins from the Central Arctic Ocean.

Published in:

Genes, 2023, v. 14, n. 2, p. 363, doi. 10.3390/genes14020363

By:

Winder, Johanna C.;
Boulton, William;
Salamov, Asaf;
Eggers, Sarah Lena;
Metfies, Katja;
Moulton, Vincent;
Mock, Thomas

Publication type:

Article

Convergence of Prognostic Gene Signatures Suggests Underlying Mechanisms of Human Prostate Cancer Progression.

Published in:

Genes, 2020, v. 11, n. 7, p. 802, doi. 10.3390/genes11070802

By:

Luca, Bogdan-Alexandru;
Moulton, Vincent;
Ellis, Christopher;
Connell, Shea P.;
Brewer, Daniel S.;
Cooper, Colin S.

Publication type:

Article

Structural and Functional Analysis of Viral siRNAs.

Published in:

PLoS Pathogens, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.ppat.1000838

By:

Szittya, Gyorgy;
Moxon, Simon;
Pantaleo, Vitantonio;
Toth, Gabor;
Rusholme Pilcher, Rachel L.;
Moulton, Vincent;
Burgyan, Jozsef;
Dalmay, Tamas

Publication type:

Article

VisRD—visual recombination detection.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3654, doi. 10.1093/bioinformatics/bth400

By:

Forslund, Kristoffer;
Huson, Daniel H.;
Moulton, Vincent

Publication type:

Article

INDISIM-Denitrification, an individual-based model for study the denitrification process.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2020, v. 47, n. 1, p. 1, doi. 10.1007/s10295-019-02245-8

By:

Araujo-Granda, Pablo;
Gras, Anna;
Ginovart, Marta;
Moulton, Vincent

Publication type:

Article

Prioritizing Populations for Conservation Using Phylogenetic Networks.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088945

By:

Volkmann, Logan;
Martyn, Iain;
Moulton, Vincent;
Spillner, Andreas;
Mooers, Arne O.

Publication type:

Article

OSF-Builder: A New Tool for Constructing and Representing Evolutionary Histories Involving Introgression.

Published in:

Systematic Biology, 2019, v. 68, n. 5, p. 717, doi. 10.1093/sysbio/syz004

By:

Scholz, Guillaume E;
Popescu, Andrei-Alin;
Taylor, Martin I;
Moulton, Vincent;
Huber, Katharina T

Publication type:

Article

Exploring and Visualizing Spaces of Tree Reconciliations.

Published in:

Systematic Biology, 2019, v. 68, n. 4, p. 607, doi. 10.1093/sysbio/syy075

By:

Huber, Katharina T;
Moulton, Vincent;
Sagot, Marie-France;
Sinaimeri, Blerina

Publication type:

Article

How Much Information is Needed to Infer Reticulate Evolutionary Histories?

Published in:

Systematic Biology, 2015, v. 64, n. 1, p. 102, doi. 10.1093/sysbio/syu076

By:

Huber, Katharina T.;
Van Iersel, Leo;
Moulton, Vincent;
Wu, Taoyang

Publication type:

Article

FlatNJ: A Novel Network-Based Approach to Visualize Evolutionary and Biogeographical Relationships.

Published in:

Systematic Biology, 2014, v. 63, n. 3, p. 383

By:

Balvočūtė, Monika;
Spillner, Andreas;
Moulton, Vincent

Publication type:

Article

Novel Distances for Dollo Data.

Published in:

Systematic Biology, 2013, v. 62, n. 1, p. 62, doi. 10.1093/sysbio/sys071

By:

WOODHAMS, MICHAEL;
STEANE, DOROTHY A.;
JONES, REBECCA C.;
NICOLLE, DEAN;
MOULTON, VINCENT;
HOLLAND, BARBARA R.

Publication type:

Article

Untangling Complex Histories of Genome Mergings in High Polyploids.

Published in:

Systematic Biology, 2007, v. 56, n. 3, p. 467, doi. 10.1080/10635150701424553

By:

Brysting, Anne K.;
Oxelman, Bengt;
Huber, Katharina T.;
Moulton, Vincent;
Brochmann, Christian

Publication type:

Article

Biogeographic Interpretation of Splits Graphs: Least Squares Optimization of Branch Lengths.

Published in:

Systematic Biology, 2005, v. 54, n. 1, p. 56, doi. 10.1080/10635150590906046

By:

Winkworth, Richard;
Bryant, David;
Lockhart, Peter;
Havell, David;
Moulton, Vincent

Publication type:

Article

Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods.

Published in:

Systematic Biology, 2005, v. 54, n. 1, p. 66, doi. 10.1080/10635150590906055

By:

Holland, Barbara;
xE9;déric#Delsuc, Fr&;
Moulton, Vincent

Publication type:

Article

FiRePat-Finding Regulatory Patterns between sRNAs and Genes.

Published in:

WIREs: Data Mining & Knowledge Discovery, 2012, v. 2, n. 3, p. 273, doi. 10.1002/widm.1053

By:

Mohorianu, Irina;
Lopez-Gomollon, Sara;
Schwach, Frank;
Dalmay, Tamas;
Moulton, Vincent

Publication type:

Article

HOPF-BRAID GROUPS.

Published in:

Journal of Knot Theory & Its Ramifications, 1998, v. 7, n. 8, p. 1107, doi. 10.1142/S0218216598000619

By:

MOULTON, VINCENT

Publication type:

Article

Deciphering the diversity of small RNAs in plants: the long and short of it.

Published in:

Briefings in Functional Genomics & Proteomics, 2009, v. 8, n. 6, p. 472, doi. 10.1093/bfgp/elp024

By:

Schwach, Frank;
Moxon, Simon;
Moulton, Vincent;
Dalmay, Tamas

Publication type:

Article

Concerning the Relationship between Realizations and Tight Spans of Finite Metrics.

Published in:

Discrete & Computational Geometry, 2007, v. 38, n. 3, p. 605, doi. 10.1007/s00454-007-1352-5

By:

Jack Koolen;
Alice Lesser;
Vincent Moulton

Publication type:

Article

MicroRNAs Associated with Caste Determination and Differentiation in a Primitively Eusocial Insect.

Published in:

Scientific Reports, 2017, p. 45674, doi. 10.1038/srep45674

By:

Collins, David H.;
Mohorianu, Irina;
Beckers, Matthew;
Moulton, Vincent;
Dalmay, Tamas;
Bourke, Andrew F. G.

Publication type:

Article

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns.

Published in:

Plant Journal, 2011, v. 67, n. 2, p. 232, doi. 10.1111/j.1365-313X.2011.04586.x

By:

Mohorianu, Irina;
Schwach, Frank;
Jing, Runchun;
Lopez-Gomollon, Sara;
Moxon, Simon;
Szittya, Gyorgy;
Sorefan, Karim;
Moulton, Vincent;
Dalmay, Tamas

Publication type:

Article

Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis.

Published in:

Plant Journal, 2010, v. 62, n. 6, p. 960, doi. 10.1111/j.1365-313X.2010.04208.x

By:

Pantaleo, Vitantonio;
Szittya, Gyorgy;
Moxon, Simon;
Miozzi, Laura;
Moulton, Vincent;
Dalmay, Tamas;
Burgyan, Jozsef

Publication type:

Article

Maximal Energy Bipartite Graphs.

Published in:

Graphs & Combinatorics, 2003, v. 19, n. 1, p. 131, doi. 10.1007/s00373-002-0487-7

By:

Koolen, Jack H.;
Moulton, Vincent

Publication type:

Article

Activation of the innate immune response and interferon signalling in myotonic dystrophy type 1 and type 2 cataracts.

Published in:

Human Molecular Genetics, 2012, v. 21, n. 4, p. 852, doi. 10.1093/hmg/ddr515

By:

Rhodes, Jeremy D.;
Lott, Martin C.;
Russell, Sarah L.;
Moulton, Vincent;
Sanderson, Julie;
Wormstone, I. Michael;
Broadway, David C.

Publication type:

Article

MirPlex: A Tool for Identifying miRNAs in High-Throughput sRNA Datasets Without a Genome.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2013, v. 320, n. 1, p. 47, doi. 10.1002/jez.b.22483

By:

MAPLESON, DANIEL;
MOXON, SIMON;
DALMAY, TAMAS;
MOULTON, VINCENT

Publication type:

Article

MirPlex: A Tool for Identifying miRNAs in High-Throughput sRNA Datasets Without a Genome MirPlex: A Tool for Identifying miRNAs in High-Throughput sRNA Datasets Without a Genome.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2013, v. 320, n. 1, p. 47, doi. 10.1002/jez.b.22483

By:

Mapleson, Daniel;
Moxon, Simon;
Dalmay, Tamas;
Moulton, Vincent

Publication type:

Article

Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 901, doi. 10.1186/1471-2164-15-901

By:

Toseland, Andrew;
Moxon, Simon;
Mock, Thomas;
Moulton, Vincent

Publication type:

Article

Global discovery and characterization of small non-coding RNAs in marine microalgae.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 697, doi. 10.1186/1471-2164-15-697

By:

Lopez-Gomollon, Sara;
Beckers, Matthew;
Rathjen, Tina;
Moxon, Simon;
Maumus, Florian;
Mohorianu, Irina;
Moulton, Vincent;
Dalmay, Tamas;
Mock, Thomas

Publication type:

Article

A distance-based model for convergent evolution.

Published in:

Journal of Mathematical Biology, 2024, v. 88, n. 2, p. 1, doi. 10.1007/s00285-023-02038-9

By:

Holland, Barbara;
Huber, Katharina T.;
Moulton, Vincent

Publication type:

Article

The rigid hybrid number for two phylogenetic trees.

Published in:

Journal of Mathematical Biology, 2021, v. 82, n. 5, p. 1, doi. 10.1007/s00285-021-01594-2

By:

Huber, Katharina T.;
Linz, Simone;
Moulton, Vincent

Publication type:

Article

Reconciling event-labeled gene trees with MUL-trees and species networks.

Published in:

Journal of Mathematical Biology, 2019, v. 79, n. 5, p. 1885, doi. 10.1007/s00285-019-01414-8

By:

Hellmuth, Marc;
Huber, Katharina T.;
Moulton, Vincent

Publication type:

Article

Recovering normal networks from shortest inter-taxa distance information.

Published in:

Journal of Mathematical Biology, 2018, v. 77, n. 3, p. 571, doi. 10.1007/s00285-018-1218-x

By:

Bordewich, Magnus;
Huber, Katharina T.;
Moulton, Vincent;
Semple, Charles

Publication type:

Article

Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.

Published in:

Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01254-7

By:

Duncan, Anthony;
Barry, Kerrie;
Daum, Chris;
Eloe-Fadrosh, Emiley;
Roux, Simon;
Schmidt, Katrin;
Tringe, Susannah G.;
Valentin, Klaus U.;
Varghese, Neha;
Salamov, Asaf;
Grigoriev, Igor V.;
Leggett, Richard M.;
Moulton, Vincent;
Mock, Thomas

Publication type:

Article

The Space of Equidistant Phylogenetic Cactuses.

Published in:

Annals of Combinatorics, 2024, v. 28, n. 1, p. 1, doi. 10.1007/s00026-023-00656-0

By:

Huber, Katharina T.;
Moulton, Vincent;
Owen, Megan;
Spillner, Andreas;
St. John, Katherine

Publication type:

Article

Preface.

Published in:

Annals of Combinatorics, 2006, v. 10, n. 1, p. I, doi. 10.1007/s00026-006-0000-8

By:

Moulton, Vincent

Publication type:

Article

Hereditarily Optimal Realizations of Consistent Metrics.

Published in:

Annals of Combinatorics, 2006, v. 10, n. 1, p. 63, doi. 10.1007/s00026-006-0274-x

By:

Dress, Andreas;
Huber, Katharina T.;
Lesser, Alice;
Moulton, Vincent

Publication type:

Article