Works by Médigue, Claudine

Results: 57

16S rRNA and As-Related Functional Diversity: Contrasting Fingerprints in Arsenic-Rich Sediments from an Acid Mine Drainage.

Published in:

Microbial Ecology, 2015, v. 70, n. 1, p. 154, doi. 10.1007/s00248-014-0558-3

By:

Fahy, Anne;
Giloteaux, Ludovic;
Bertin, Philippe;
Paslier, Denis;
Médigue, Claudine;
Weissenbach, Jean;
Duran, Robert;
Lauga, Béatrice

Publication type:

Article

Comparative Genomics of Aeschynomene Symbionts: Insights into the Ecological Lifestyle of Nod-Independent Photosynthetic Bradyrhizobia.

Published in:

Genes, 2012, v. 3, n. 1, p. 35, doi. 10.3390/genes3010035

By:

Mornico, Damien;
Miché, Lucie;
Béna, Gilles;
Nouwen, Nico;
Verméglio, André;
Vallenet, David;
Smith, Alexander A. T.;
Giraud, Eric;
Médigue, Claudine;
Moulin, Lionel

Publication type:

Article

A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.

Published in:

Microbial Biotechnology, 2023, v. 16, n. 6, p. 1203, doi. 10.1111/1751-7915.14257

By:

Bremer, Erhard;
Calteau, Alexandra;
Danchin, Antoine;
Harwood, Colin;
Helmann, John D.;
Médigue, Claudine;
Palsson, Bernhard O.;
Sekowska, Agnieszka;
Vallenet, David;
Zuniga, Abril;
Zuniga, Cristal

Publication type:

Article

Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-568

By:

Ogier, Jean-Claude;
Calteau, Alexandra;
Forst, Steve;
Goodrich-Blair, Heidi;
Roche, David;
Rouy, Zoé;
Suen, Garret;
Zumbihl, Robert;
Givaudan, Alain;
Tailliez, Patrick;
Médigue, Claudine;
Gaudriault, Sophie

Publication type:

Article

Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates,Photorhabdus and Xenorhabdus.

Published in:

BMC Genomics, 2010, v. 11, p. 568, doi. 10.1186/1471-2164-11-568

By:

Ogier, Jean-Claude;
Calteau, Alexandra;
Forst, Steve;
Goodrich-Blair, Heidi;
Roche, David;
Rouy, Zoé;
Suen, Garret;
Zumbihl, Robert;
Givaudan, Alain;
Tailliez, Patrick;
Médigue, Claudine;
Gaudriault, Sophie

Publication type:

Article

Genomes of three tomato pathogens within theRalstonia solanacearum species complex revealsignificant evolutionary divergence.

Published in:

BMC Genomics, 2010, v. 11, p. 379, doi. 10.1186/1471-2164-11-379

By:

Remenant, Benoît;
Coupat-Goutaland, Bénédicte;
Guidot, Alice;
Cellier, Gilles;
Wicker, Emmanuel;
Allen, Caitilyn;
Fegan, Mark;
Pruvost, Olivier;
Elbaz, Mounira;
Calteau, Alexandra;
Salvignol, Gregory;
Mornico, Damien;
Mangenot, Sophie;
Barbe, Valérie;
Médigue, Claudine;
Prior, Philippe

Publication type:

Article

From array-based hybridization of Helicobacterpylori isolates to the complete genome sequenceof an isolate associated with MALT lymphoma.

Published in:

BMC Genomics, 2010, v. 11, p. 368, doi. 10.1186/1471-2164-11-368

By:

Thiberge, Jean-Michel;
Boursaux-Eude, Caroline;
Lehours, Philippe;
Dillies, Marie-Agnès;
Creno, Sophie;
Coppée, Jean-Yves;
Rouy, Zoé;
Lajus, Aurélie;
Ma, Laurence;
Burucoa, Christophe;
Ruskoné-Foumestraux, Anne;
Courillon-Mallet, Anne;
De Reuse, Hilde;
Boneca, Ivo Gomperts;
Lamarque, Dominique;
Mégraud, Francis;
Delchier, Jean-Charles;
Médigue, Claudine;
Bouchier, Christiane;
Labigne, Agnès

Publication type:

Article

Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.

Published in:

2021

By:

Gautreau, Guillaume;
Bazin, Adelme;
Gachet, Mathieu;
Planel, Rémi;
Burlot, Laura;
Dubois, Mathieu;
Perrin, Amandine;
Médigue, Claudine;
Calteau, Alexandra;
Cruveiller, Stéphane;
Matias, Catherine;
Ambroise, Christophe;
Rocha, Eduardo P. C.;
Vallenet, David

Publication type:

Correction Notice

Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.

Published in:

Extremophiles, 2016, v. 20, n. 3, p. 301, doi. 10.1007/s00792-016-0822-1

By:

Zhang, Sheng-Da;
Santini, Claire-Lise;
Zhang, Wei-Jia;
Barbe, Valérie;
Mangenot, Sophie;
Guyomar, Charlotte;
Garel, Marc;
Chen, Hai-Tao;
Li, Xue-Gong;
Yin, Qun-Jian;
Zhao, Yuan;
Armengaud, Jean;
Gaillard, Jean-Charles;
Martini, Séverine;
Pradel, Nathalie;
Vidaud, Claude;
Alberto, François;
Médigue, Claudine;
Tamburini, Christian;
Wu, Long-Fei

Publication type:

Article

Imagene: an integrated computer environment for sequence annotation and analysis.

Published in:

Bioinformatics, 1999, v. 15, n. 1, p. 2, doi. 10.1093/bioinformatics/15.1.2

By:

Médigue, Claudine;
Rechenmann, François;
Danchin, Antoine;
Viari, Alain

Publication type:

Article

Persistent biases in the amino acid composition of prokaryotic proteins.

Published in:

BioEssays, 2006, v. 28, n. 7, p. 726, doi. 10.1002/bies.20431

By:

Pascal, Geraldine;
Médigue, Claudine;
Antoine Danchin

Publication type:

Article

Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant.

Published in:

PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0127630

By:

Persson, Tomas;
Battenberg, Kai;
Demina, Irina V.;
Vigil-Stenman, Theoden;
Vanden Heuvel, Brian;
Pujic, Petar;
Facciotti, Marc T.;
Wilbanks, Elizabeth G.;
O'Brien, Anna;
Fournier, Pascale;
Cruz Hernandez, Maria Antonia;
Mendoza Herrera, Alberto;
Médigue, Claudine;
Normand, Philippe;
Pawlowski, Katharina;
Berry, Alison M.

Publication type:

Article

Genome Features of the Endophytic Actinobacterium Micromonospora lupini Strain Lupac 08: On the Process of Adaptation to an Endophytic Life Style?

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0108522

By:

Trujillo, Martha E.;
Bacigalupe, Rodrigo;
Pujic, Petar;
Igarashi, Yasuhiro;
Benito, Patricia;
Riesco, Raúl;
Médigue, Claudine;
Normand, Philippe

Publication type:

Article

The Complete Genome Sequence of Cupriavidus metallidurans Strain CH34, a Master Survivalist in Harsh and Anthropogenic Environments.

Published in:

PLoS ONE, 2010, v. 5, n. 5, p. 1, doi. 10.1371/journal.pone.0010433

By:

Janssen, Paul J.;
van Houdt, Rob;
Moors, Hugo;
Monsieurs, Pieter;
Morin, Nicolas;
Michaux, Arlette;
Benotmane, Mohammed A.;
Leys, Natalie;
Vallaeys, Tatiana;
Lapidus, Alla;
Monchy, Sébastien;
Médigue, Claudine;
Taghavi, Safiyh;
McCorkle, Sean;
Dunn, John;
van der Lelie, Daniël;
Mergeay, Max

Publication type:

Article

Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles.

Published in:

PLoS ONE, 2008, v. 3, n. 3, p. 1, doi. 10.1371/journal.pone.0001805

By:

Vallenet, David;
Nordmann, Patrice;
Barbe, Valérie;
Poirel, Laurent;
Mangenot, Sophie;
Bataille, Elodie;
Dossat, Carole;
Gas, Shahinaz;
Kreimeyer, Annett;
Lenoble, Patricia;
Oztas, Sophie;
Poulain, Julie;
Segurens, Béatrice;
Robert, Catherine;
Abergel, Chantal;
Claverie, Jean-Michel;
Raoult, Didier;
Médigue, Claudine;
Weissenbach, Jean;
Cruveiller, Stéphane

Publication type:

Article

Genome Sequence of the Saprophyte Leptospira biflexa Provides Insights into the Evolution of Leptospira and the Pathogenesis of Leptospirosis.

Published in:

PLoS ONE, 2008, v. 3, n. 2, p. 1, doi. 10.1371/journal.pone.0001607

By:

Picardeau, Mathieu;
Bulach, Dieter M.;
Bouchier, Christiane;
Zuerner, Richard L.;
Zidane, Nora;
Wilson, Peter J.;
Creno, Sophie;
Kuczek, Elizabeth S.;
Bommezzadri, Simona;
Davis, John C.;
McGrath, Annette;
Johnson, Matthew J.;
Boursaux-Eude, Caroline;
Seemann, Torsten;
Rouy, Zoé;
Coppel, Ross L.;
Rood, Julian I.;
Lajus, Aurélie;
Davies, John K.;
Médigue, Claudine

Publication type:

Article

Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria.

Published in:

BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0662-8

By:

Plucain, Jessica;
Suau, Antonia;
Cruveiller, Stéphane;
Médigue, Claudine;
Schneider, Dominique;
Le Gac, Mickaël

Publication type:

Article

A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.10

By:

de Berardinis, Véronique;
Vallenet, David;
Castelli, Vanina;
Besnard, Marielle;
Pinet, Agnès;
Cruaud, Corinne;
Samair, Sumitta;
Lechaplais, Christophe;
Gyapay, Gabor;
Richez, Céline;
Durot, Maxime;
Kreimeyer, Annett;
Le Fèvre, François;
Schächter, Vincent;
Pezo, Valérie;
Döring, Volker;
Scarpelli, Claude;
Médigue, Claudine;
Cohen, Georges N;
Marlière, Philippe

Publication type:

Article

Exploring the genomes of Frankia.

Published in:

Physiologia Plantarum, 2007, v. 130, n. 3, p. 331, doi. 10.1111/j.1399-3054.2007.00918.x

By:

Normand, Philippe;
Queiroux, Clothilde;
Tisa, Louis S.;
Benson, David R.;
Rouy, Zoé;
Cruveiller, Stéphane;
Médigue, Claudine

Publication type:

Article

The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of P roteobacteria.

Published in:

Environmental Microbiology, 2017, v. 19, n. 3, p. 1103, doi. 10.1111/1462-2920.13637

By:

Ji, Boyang;
Zhang, Sheng ‐ Da;
Zhang, Wei ‐ Jia;
Rouy, Zoe;
Alberto, François;
Santini, Claire ‐ Lise;
Mangenot, Sophie;
Gagnot, Séverine;
Philippe, Nadège;
Pradel, Nathalie;
Zhang, Lichen;
Tempel, Sébastien;
Li, Ying;
Médigue, Claudine;
Henrissat, Bernard;
Coutinho, Pedro M.;
Barbe, Valérie;
Talla, Emmanuel;
Wu, Long ‐ Fei

Publication type:

Article

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.

Published in:

Environmental Microbiology, 2016, v. 18, n. 10, p. 3403, doi. 10.1111/1462-2920.13230

By:

Belda, Eugeni;
van Heck, Ruben G. A.;
José Lopez ‐ Sanchez, Maria;
Cruveiller, Stéphane;
Barbe, Valérie;
Fraser, Claire;
Klenk, Hans ‐ Peter;
Petersen, Jörn;
Morgat, Anne;
Nikel, Pablo I.;
Vallenet, David;
Rouy, Zoé;
Sekowska, Agnieszka;
Martins dos Santos, Vitor A. P.;
de Lorenzo, Víctor;
Danchin, Antoine;
Médigue, Claudine

Publication type:

Article

Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity.

Published in:

Environmental Microbiology, 2009, v. 11, n. 8, p. 1959, doi. 10.1111/j.1462-2920.2009.01918.x

By:

Le Roux, Frédérique;
Zouine, Mohamed;
Chakroun, Nesrine;
Binesse, Johan;
Saulnier, Denis;
Bouchier, Christiane;
Zidane, Nora;
Ma, Laurence;
Rusniok, Christophe;
Lajus, Aurélie;
Buchrieser, Carmen;
Médigue, Claudine;
Polz, Martin F.;
Mazel, Didier

Publication type:

Article

A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus.

Published in:

Molecular Microbiology, 2007, v. 63, n. 4, p. 1145, doi. 10.1111/j.1365-2958.2006.05570.x

By:

Derbise, Anne;
Chenal-Francisque, Viviane;
Pouillot, Flavie;
Fayolle, Corinne;
Prévost, Marie-Christine;
Médigue, Claudine;
Hinnebusch, Bernard Joseph;
Carniel, Elisabeth

Publication type:

Article

Evolutionary history and genetic parallelism affect correlated responses to evolution.

Published in:

Molecular Ecology, 2013, v. 22, n. 12, p. 3292, doi. 10.1111/mec.12312

By:

Gac, Mickael;
Cooper, Tim F.;
Cruveiller, Stéphane;
Médigue, Claudine;
Schneider, Dominique

Publication type:

Article

Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 10, p. 1985, doi. 10.1038/ismej.2013.90

By:

Goudenège, David;
Labreuche, Yannick;
Krin, Evelyne;
Ansquer, Dominique;
Mangenot, Sophie;
Calteau, Alexandra;
Médigue, Claudine;
Mazel, Didier;
Polz, Martin F;
Le Roux, Frédérique

Publication type:

Article

Experimental evolution of nodule intracellular infection in legume symbionts.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 7, p. 1367, doi. 10.1038/ismej.2013.24

By:

Guan, Su Hua;
Gris, Carine;
Cruveiller, Stéphane;
Pouzet, Cécile;
Tasse, Lena;
Leru, Aurélie;
Maillard, Aline;
Médigue, Claudine;
Batut, Jacques;
Masson-Boivin, Catherine;
Capela, Delphine

Publication type:

Article

Profiling the orphan enzymes.

Published in:

Biology Direct, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1745-6150-9-10

By:

Sorokina, Maria;
Stam, Mark;
Médigue, Claudine;
Lespinet, Olivier;
Vallenet, David

Publication type:

Article

Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila.

Published in:

Nature Biotechnology, 2006, v. 24, n. 6, p. 673, doi. 10.1038/nbt1212

By:

Vodovar, Nicolas;
Vallenet, David;
Cruveiller, Stéphane;
Rouy, Zoé;
Barbe, Valérie;
Acosta, Carlos;
Cattolico, Laurence;
Jubin, Claire;
Lajus, Aurélie;
Segurens, Béatrice;
Vacherie, Benoît;
Wincker, Patrick;
Weissenbach, Jean;
Lemaitre, Bruno;
Médigue, Claudine;
Boccard, Frédéric

Publication type:

Article

Universal biases in protein composition of model prokaryotes.

Published in:

Proteins, 2005, v. 60, n. 1, p. 27, doi. 10.1002/prot.20475

By:

Pascal, Géraldine;
Médigue, Claudine;
Danchin, Antoine

Publication type:

Article

Experimental Evolution of a Plant Pathogen into a Legume Symbiont.

Published in:

PLoS Biology, 2010, v. 8, n. 1, p. 1, doi. 10.1371/journal.pbio.1000280

By:

Marchetti, Marta;
Capela, Delphine;
Glew, Michelle;
Cruveiller, Stéphane;
Chane-Woon-Ming, Béatrice;
Gris, Carine;
Timmers, Ton;
Poinsot, Véréna;
Gilbert, Luz B.;
Heeb, Philipp;
Médigue, Claudine;
Batut, Jacques;
Masson-Boivin, Catherine

Publication type:

Article

MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.

Published in:

Briefings in Bioinformatics, 2019, p. 1071, doi. 10.1093/bib/bbx113

By:

Médigue, Claudine;
Calteau, Alexandra;
Cruveiller, Stéphane;
Gachet, Mathieu;
Gautreau, Guillaume;
Josso, Adrien;
Lajus, Aurélie;
Langlois, Jordan;
Pereira, Hugo;
Planel, Rémi;
Roche, David;
Rollin, Johan;
Rouy, Zoe;
Vallenet, David

Publication type:

Article

Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement.

Published in:

Microbial Biotechnology, 2018, v. 11, n. 1, p. 3, doi. 10.1111/1751-7915.13043

By:

Borriss, Rainer;
Danchin, Antoine;
Harwood, Colin R.;
Médigue, Claudine;
Rocha, Eduardo P. C.;
Sekowska, Agnieszka;
Vallenet, David

Publication type:

Article

Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-54

By:

Ramos, Pablo Ivan Pereira;
Picão, Renata C.;
Almeida, Luiz Gonzaga P.;
Lima, Nicholas Costa B.;
Girardello, Raquel;
Vivan, Ana Carolina P.;
Xavier, Danilo E.;
Barcellos, Fernando G.;
Pelisson, Marsileni;
Vespero, Eliana C.;
Médigue, Claudine;
Vasconcelos, Ana Tereza R.;
Gales, Ana C.;
Nicolás, Marisa F.

Publication type:

Article

GROOLS: reactive graph reasoning for genome annotation through biological processes.

Published in:

BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2126-1

By:

Mercier, Jonathan;
Josso, Adrien;
Médigue, Claudine;
Vallenet, David

Publication type:

Article

ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis.

Published in:

Scientific Data, 2021, v. 8, n. 1, p. 1, doi. 10.1038/s41597-021-01095-3

By:

Imbert, Alyssa;
Rompais, Magali;
Selloum, Mohammed;
Castelli, Florence;
Mouton-Barbosa, Emmanuelle;
Brandolini-Bunlon, Marion;
Chu-Van, Emeline;
Joly, Charlotte;
Hirschler, Aurélie;
Roger, Pierrick;
Burger, Thomas;
Leblanc, Sophie;
Sorg, Tania;
Ouzia, Sadia;
Vandenbrouck, Yves;
Médigue, Claudine;
Junot, Christophe;
Ferro, Myriam;
Pujos-Guillot, Estelle;
de Peredo, Anne Gonzalez

Publication type:

Article

Exploring the Penicillium marneffei genome.

Published in:

Archives of Microbiology, 2003, v. 179, n. 5, p. 339, doi. 10.1007/s00203-003-0533-8

By:

Kwok-yung Yuen;
Pascal, Géraldine;
Wong, Samson S. Y.;
Glaser, Philippe;
Woo, Patrick C. Y.;
Kunst, Frank;
Cai, James J.;
Cheung, Elim Y. L.;
Médigue, Claudine;
Danchin, Antoine

Publication type:

Article

MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. D1, p. D579, doi. 10.1093/nar/gkz926

By:

Vallenet, David;
Calteau, Alexandra;
Dubois, Mathieu;
Amours, Paul;
Bazin, Adelme;
Beuvin, Mylène;
Burlot, Laura;
Bussell, Xavier;
Fouteau, Stéphanie;
Gautreau, Guillaume;
Lajus, Aurélie;
Langlois, Jordan;
Planel, Rémi;
Roche, David;
Rollin, Johan;
Rouy, Zoe;
Sabatet, Valentin;
Médigue, Claudine

Publication type:

Article

Comparative Genomics between Two Xenorhabdus bovienii Strains Highlights Differential Evolutionary Scenarios within an Entomopathogenic Bacterial Species.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 1, p. 148, doi. 10.1093/gbe/evv248

By:

Bisch, Gaëlle;
Ogier, Jean-Claude;
Médigue, Claudine;
Rouy, Zoé;
Vincent, Stéphanie;
Tailliez, Patrick;
Givaudan, Alain;
Gaudriault, Sophie

Publication type:

Article

RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori.

Published in:

RNA Biology, 2016, v. 13, n. 2, p. 243, doi. 10.1080/15476286.2015.1132141

By:

Redko, Yulia;
Galtier, Eloïse;
Arnion, Hélène;
Darfeuille, Fabien;
Sismeiro, Odile;
Coppée, Jean-Yves;
Médigue, Claudine;
Weiman, Marion;
Cruveiller, Stéphane;
De Reuse, Hilde

Publication type:

Article

Deciphering the evolution and metabolism of an anammox bacterium from a community genome.

Published in:

2006

By:

Strous, Marc;
Pelletier, Eric;
Mangenot, Sophie;
Rattei, Thomas;
Lehner, Angelika;
Taylor, Michael W.;
Horn, Matthias;
Daims, Holger;
Bartol-Mavel, Delphine;
Wincker, Patrick;
Barbe, Valérie;
Fonknechten, Nuria;
Vallenet, David;
Segurens, Béatrice;
Schenowitz-Truong, Chantal;
Médigue, Claudine;
Collingro, Astrid;
Snel, Berend;
Dutilh, Bas E.;
Op den Camp, Huub J. M.

Publication type:

Letter

Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 19, p. 5766, doi. 10.1093/nar/gkh910

By:

Barbe, Valérie;
Vallenet, David;
Fonknechten, Nuria;
Kreimeyer, Annett;
Oztas, Sophie;
Labarre, Laurent;
Cruveiller, Stéphane;
Robert, Catherine;
Duprat, Simone;
Wincker, Patrick;
Ornston, L. Nicholas;
Weissenbach, Jean;
Marlière, Philippe;
Cohen, Georges N.;
Médigue, Claudine

Publication type:

Article

AMIGene: Annotation of MIcrobial Genes.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3723, doi. 10.1093/nar/gkg590

By:

Bocs, Stéphanie;
Cruveiller, Stéphane;
Vallenet, David;
Nuel, Grégory;
Médigue, Claudine

Publication type:

Article

Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease.

Published in:

Genome Biology, 2014, v. 15, n. 11, p. 1, doi. 10.1186/s13059-014-0505-0

By:

Gomez-Valero, Laura;
Rusniok, Christophe;
Rolando, Monica;
Neou, Mario;
Dervins-Ravault, Delphine;
Demirtas, Jasmin;
Rouy, Zoe;
Moore, Robert J.;
Honglei Chen;
Petty, Nicola K.;
Jarraud, Sophie;
Etienne, Jerome;
Steinert, Michael;
Heuner, Klaus;
Gribaldo, Simonetta;
Médigue, Claudine;
Glöckner, Gernot;
Hartland, Elizabeth L.;
Buchrieser, Carmen

Publication type:

Article

Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies.

Published in:

Genome Biology, 2013, v. 14, n. 2, p. 1, doi. 10.1186/gb-2013-14-2-r17

By:

Sugawara, Masayuki;
Epstein, Brendan;
Badgley, Brian D.;
Unno, Tatsuya;
Lei Xu;
Reese, Jennifer;
Gyaneshwar, Prasad;
Denny, Roxanne;
Mudge, Joann;
Bharti, Arvind K.;
Farmer, Andrew D.;
May, Gregory D.;
Woodward, Jimmy E.;
Médigue, Claudine;
Vallenet, David;
Lajus, Aurélie;
Rouy, Zoé;
Martinez-Vaz, Betsy;
Tiffin, Peter;
Young, Nevin D.

Publication type:

Article

Attenuated Virulence and Genomic Reductive Evolution in the Entomopathogenic Bacterial Symbiont Species, Xenorhabdus poinarii.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 6, p. 1495, doi. 10.1093/gbe/evu119

By:

Ogier, Jean-Claude;
Pagès, Sylvie;
Bisch, Gaëlle;
Chiapello, Hélène;
Médigue, Claudine;
Rouy, Zoé;
Teyssier, Corinne;
Vincent, Stéphanie;
Tailliez, Patrick;
Givaudan, Alain;
Gaudriault, Sophie

Publication type:

Article

Life in an Arsenic-Containing Gold Mine: Genome and Physiology of the Autotrophic Arsenite-Oxidizing Bacterium Rhizobium sp. NT-26.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 5, p. 934, doi. 10.1093/gbe/evt061

By:

Andres, Jérémy;
Arsène-Ploetze, Florence;
Barbe, Valérie;
Brochier-Armanet, Céline;
Cleiss-Arnold, Jessica;
Coppée, Jean-Yves;
Dillies, Marie-Agnès;
Geist, Lucie;
Joublin, Aurélie;
Koechler, Sandrine;
Lassalle, Florent;
Marchal, Marie;
Médigue, Claudine;
Muller, Daniel;
Nesme, Xavier;
Plewniak, Frédéric;
Proux, Caroline;
Ramírez-Bahena, Martha Helena;
Schenowitz, Chantal;
Sismeiro, Odile

Publication type:

Article

Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 5

By:

Bocs, Stéphanie;
Danchin, Antoine;
Médigue, Claudine

Publication type:

Article

PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007732

By:

Gautreau, Guillaume;
Bazin, Adelme;
Gachet, Mathieu;
Planel, Rémi;
Burlot, Laura;
Dubois, Mathieu;
Perrin, Amandine;
Médigue, Claudine;
Calteau, Alexandra;
Cruveiller, Stéphane;
Matias, Catherine;
Ambroise, Christophe;
Rocha, Eduardo P. C.;
Vallenet, David

Publication type:

Article

panRGP: a pangenome-based method to predict genomic islands and explore their diversity.

Published in:

Bioinformatics, 2020, v. 36, p. i651, doi. 10.1093/bioinformatics/btaa792

By:

Bazin, Adelme;
Gautreau, Guillaume;
Médigue, Claudine;
Vallenet, David;
Calteau, Alexandra

Publication type:

Article

Expansion of the SOS regulon of <italic>Vibrio cholerae</italic> through extensive transcriptome analysis and experimental validation.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4716-8

By:

Krin, Evelyne;
Pierlé, Sebastian Aguilar;
Sismeiro, Odile;
Jagla, Bernd;
Dillies, Marie-Agnès;
Varet, Hugo;
Irazoki, Oihane;
Campoy, Susana;
Rouy, Zoé;
Cruveiller, Stéphane;
Médigue, Claudine;
Coppée, Jean-Yves;
Mazel, Didier

Publication type:

Article