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GalR, GalX and AraR co‐regulate d‐galactose and l‐arabinose utilization in Aspergillus nidulans.
Published in:
Microbial Biotechnology, 2022, v. 15, n. 6, p. 1839, doi. 10.1111/1751-7915.14025
By:
- Meng, Jiali;
- Németh, Zoltán;
- Peng, Mao;
- Fekete, Erzsébet;
- Garrigues, Sandra;
- Lipzen, Anna;
- Ng, Vivian;
- Savage, Emily;
- Zhang, Yu;
- Grigoriev, Igor V.;
- Mäkelä, Miia R.;
- Karaffa, Levente;
- de Vries, Ronald P.
Publication type:
Article
Revisiting a 'simple' fungal metabolic pathway reveals redundancy, complexity and diversity.
Published in:
Microbial Biotechnology, 2021, v. 14, n. 6, p. 2525, doi. 10.1111/1751-7915.13790
By:
- Chroumpi, Tania;
- Peng, Mao;
- Aguilar‐Pontes, Maria Victoria;
- Müller, Astrid;
- Wang, Mei;
- Yan, Juying;
- Lipzen, Anna;
- Ng, Vivian;
- Grigoriev, Igor V.;
- Mäkelä, Miia R.;
- de Vries, Ronald P.
Publication type:
Article
Depolymerization of biorefinery lignin by improved laccases of the white‐rot fungus Obba rivulosa.
Published in:
Microbial Biotechnology, 2021, v. 14, n. 5, p. 2140, doi. 10.1111/1751-7915.13896
By:
- Wallenius, Janne;
- Kontro, Jussi;
- Lyra, Christina;
- Kuuskeri, Jaana;
- Wan, Xing;
- Kähkönen, Mika A.;
- Baig, Irshad;
- Kamer, Paul C. J.;
- Sipilä, Jussi;
- Mäkelä, Miia R.;
- Nousiainen, Paula;
- Hildén, Kristiina
Publication type:
Article
Characterization of a feruloyl esterase from Aspergillus terreus facilitates the division of fungal enzymes from Carbohydrate Esterase family 1 of the carbohydrate‐active enzymes (CAZy) database.
Published in:
Microbial Biotechnology, 2018, v. 11, n. 5, p. 869, doi. 10.1111/1751-7915.13273
By:
- Mäkelä, Miia R.;
- Dilokpimol, Adiphol;
- Koskela, Salla M.;
- Kuuskeri, Jaana;
- de Vries, Ronald P.;
- Hildén, Kristiina
Publication type:
Article
Oxalate decarboxylase: biotechnological update and prevalence of the enzyme in filamentous fungi.
Published in:
Applied Microbiology & Biotechnology, 2010, v. 87, n. 3, p. 801, doi. 10.1007/s00253-010-2650-z
By:
- Mäkelä, Miia R.;
- Hildén, Kristiina;
- Lundell, Taina
Publication type:
Article
Saccharification of Lignocelluloses by Carbohydrate Active Enzymes of the White Rot Fungus Dichomitus squalens.
Published in:
PLoS ONE, 2015, v. 10, n. 12, p. 1, doi. 10.1371/journal.pone.0145166
By:
- Rytioja, Johanna;
- Hildén, Kristiina;
- Mäkinen, Susanna;
- Vehmaanperä, Jari;
- Hatakka, Annele;
- Mäkelä, Miia R.
Publication type:
Article
Oxalate-Metabolising Genes of the White-Rot Fungus <i>Dichomitus squalens</i> Are Differentially Induced on Wood and at High Proton Concentration.
Published in:
PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0087959
By:
- Mäkelä, Miia R.;
- Sietiö, Outi-Maaria;
- de Vries, Ronald P.;
- Timonen, Sari;
- Hildén, Kristiina
Publication type:
Article
The Synthetic Potential of Fungal Feruloyl Esterases: A Correlation with Current Classification Systems and Predicted Structural Properties.
Published in:
Catalysts (2073-4344), 2018, v. 8, n. 6, p. 242, doi. 10.3390/catal8060242
By:
- Antonopoulou, Io;
- Dilokpimol, Adiphol;
- Iancu, Laura;
- Mäkelä, Miia R.;
- Varriale, Simona;
- Cerullo, Gabriella;
- Hüttner, Silvia;
- Uthoff, Stefan;
- Jütten, Peter;
- Piechot, Alexander;
- Steinbüchel, Alexander;
- Olsson, Lisbeth;
- Faraco, Vincenza;
- Hildén, Kristiina S.;
- de Vries, Ronald P.;
- Rova, Ulrika;
- Christakopoulos, Paul
Publication type:
Article
Identification of an l-Arabitol Transporter from Aspergillus niger.
Published in:
Biomolecules (2218-273X), 2023, v. 13, n. 2, p. 188, doi. 10.3390/biom13020188
By:
- Meng, Jiali;
- Mäkelä, Miia R.;
- de Vries, Ronald P.
Publication type:
Article
Comparative Analysis of Enzyme Production Patterns of Lignocellulose Degradation of Two White Rot Fungi: Obba rivulosa and Gelatoporia subvermispora.
Published in:
Biomolecules (2218-273X), 2022, v. 12, n. 8, p. 1017, doi. 10.3390/biom12081017
By:
- Marinovíc, Mila;
- Di Falco, Marcos;
- Aguilar Pontes, Maria Victoria;
- Gorzsás, András;
- Tsang, Adrian;
- de Vries, Ronald P.;
- Mäkelä, Miia R.;
- Hildén, Kristiina
Publication type:
Article
Application of CRISPR/Cas9 Tools for Genome Editing in the White-Rot Fungus Dichomitus squalens.
Published in:
Biomolecules (2218-273X), 2021, v. 11, n. 10, p. 1526, doi. 10.3390/biom11101526
By:
- Kowalczyk, Joanna E.;
- Saha, Shreya;
- Mäkelä, Miia R.
Publication type:
Article
Diversity of fungal feruloyl esterases: updated phylogenetic classification, properties, and industrial applications.
Published in:
Biotechnology for Biofuels, 2016, v. 9, p. 1, doi. 10.1186/s13068-016-0651-6
By:
- Dilokpimol, Adiphol;
- Mäkelä, Miia R.;
- Aguilar‑Pontes, Maria Victoria;
- Benoit‑Gelber, Isabelle;
- Hildén, Kristiina S.;
- de Vries, Ronald P.
Publication type:
Article
Functional diversity in Dichomitus squalens monokaryons.
Published in:
IMA Fungus, 2017, v. 8, n. 1, p. 17, doi. 10.5598/imafungus.2017.08.01.02
By:
- Casado López, Sara;
- Theelen, Bart;
- Manserra, Serena;
- Issak, Tedros Yonatan;
- Rytioja, Johanna;
- Mäkelä, Miia R.;
- de Vries, Ronald P.
Publication type:
Article
Discovery of alkaline laccases from basidiomycete fungi through machine learning-based approach.
Published in:
Biotechnology for Biofuels & Bioproducts, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13068-024-02566-6
By:
- Wan, Xing;
- Shahrear, Sazzad;
- Chew, Shea Wen;
- Vilaplana, Francisco;
- Mäkelä, Miia R.
Publication type:
Article
Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation.
Published in:
Environmental Microbiology, 2020, v. 22, n. 3, p. 1154, doi. 10.1111/1462-2920.14907
By:
- Daly, Paul;
- Peng, Mao;
- Mitchell, Hugh D.;
- Kim, Young‐Mo;
- Ansong, Charles;
- Brewer, Heather;
- Gijsel, Peter;
- Lipton, Mary S.;
- Markillie, Lye Meng;
- Nicora, Carrie D.;
- Orr, Galya;
- Wiebenga, Ad;
- Hildén, Kristiina S.;
- Kabel, Mirjam A.;
- Baker, Scott E.;
- Mäkelä, Miia R.;
- Vries, Ronald P.
Publication type:
Article
Dichomitus squalens partially tailors its molecular responses to the composition of solid wood.
Published in:
Environmental Microbiology, 2018, v. 20, n. 11, p. 4141, doi. 10.1111/1462-2920.14416
By:
- Daly, Paul;
- López, Sara Casado;
- Peng, Mao;
- Lancefield, Christopher S.;
- Purvine, Samuel O.;
- Kim, Young‐Mo;
- Zink, Erika M.;
- Dohnalkova, Alice;
- Singan, Vasanth R.;
- Lipzen, Anna;
- Dilworth, David;
- Wang, Mei;
- Ng, Vivian;
- Robinson, Errol;
- Orr, Galya;
- Baker, Scott E.;
- Bruijnincx, Pieter C. A.;
- Hildén, Kristiina S.;
- Grigoriev, Igor V.;
- Mäkelä, Miia R.
Publication type:
Article
The molecular response of the white-rot fungus D ichomitus squalens to wood and non-woody biomass as examined by transcriptome and exoproteome analyses.
Published in:
Environmental Microbiology, 2017, v. 19, n. 3, p. 1237, doi. 10.1111/1462-2920.13652
By:
- Rytioja, Johanna;
- Hildén, Kristiina;
- Di Falco, Marcos;
- Zhou, Miaomiao;
- Aguilar ‐ Pontes, Maria Victoria;
- Sietiö, Outi ‐ Maaria;
- Tsang, Adrian;
- de Vries, Ronald P.;
- Mäkelä, Miia R.
Publication type:
Article
Uncovering the abilities of A garicus bisporus to degrade plant biomass throughout its life cycle.
Published in:
Environmental Microbiology, 2015, v. 17, n. 8, p. 3098, doi. 10.1111/1462-2920.12967
By:
- Patyshakuliyeva, Aleksandrina;
- Post, Harm;
- Zhou, Miaomiao;
- Jurak, Edita;
- Heck, Albert J. R.;
- Hildén, Kristiina S.;
- Kabel, Mirjam A.;
- Mäkelä, Miia R.;
- Altelaar, Maarten A. F.;
- Vries, Ronald P.
Publication type:
Article
Closely related fungi employ diverse enzymatic strategies to degrade plant biomass.
Published in:
Biotechnology for Biofuels, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13068-015-0285-0
By:
- Benoit, Isabelle;
- Culleton, Helena;
- Miaomiao Zhou;
- DiFalco, Marcos;
- Aguilar-Osorio, Guillermo;
- Battaglia, Evy;
- Bouzid, Ourdia;
- Brouwer, Carlo P. J. M.;
- El-Bushari, Hala B. O.;
- Coutinho, Pedro M.;
- Gruben, Birgit S.;
- Hildén, Kristiina S.;
- Houbraken, Jos;
- Jiménez Barboza, Luis Alexis;
- Levasseur, Anthony;
- Majoor, Eline;
- Mäkelä, Miia R.;
- Narang, Hari-Mander;
- Trejo-Aguilar, Blanca;
- van den Brink, Joost
Publication type:
Article
Expression-based clustering of CAZyme-encoding genes of Aspergillus niger.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4164-x
By:
- Gruben, Birgit S.;
- Mäkelä, Miia R.;
- Kowalczyk, Joanna E.;
- Zhou, Miaomiao;
- Benoit-Gelber, Isabelle;
- De Vries, Ronald P.
Publication type:
Article
Expression and molecular properties of a new laccase of the white rot fungus Phlebia radiata grown on wood.
Published in:
Current Genetics, 2006, v. 50, n. 5, p. 323, doi. 10.1007/s00294-006-0090-1
By:
- Mäkelä, Miia R.;
- Hildén, Kristiina S.;
- Hakala, Terhi K.;
- Hatakka, Annele;
- Lundell, Taina K.
Publication type:
Article
In Silico Analysis of Putative Sugar Transporter Genes in Aspergillus niger Using Phylogeny and Comparative Transcriptomics.
Published in:
Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01045
By:
- Mao Peng;
- Aguilar-Pontes, Maria V.;
- de Vries, Ronald P.;
- Mäkelä, Miia R.
Publication type:
Article
Genome Mining Reveals a Surprising Number of Sugar Reductases in Aspergillus niger.
Published in:
Journal of Fungi, 2023, v. 9, n. 12, p. 1138, doi. 10.3390/jof9121138
By:
- Mueller, Astrid;
- Xu, Li;
- Heine, Claudia;
- Flach, Tila;
- Mäkelä, Miia R.;
- de Vries, Ronald P.
Publication type:
Article
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum.
Published in:
Journal of Fungi, 2022, v. 8, n. 12, p. 1315, doi. 10.3390/jof8121315
By:
- Li, Jiajia;
- Chroumpi, Tania;
- Garrigues, Sandra;
- Kun, Roland S.;
- Meng, Jiali;
- Salazar-Cerezo, Sonia;
- Aguilar-Pontes, Maria Victoria;
- Zhang, Yu;
- Tejomurthula, Sravanthi;
- Lipzen, Anna;
- Ng, Vivian;
- Clendinen, Chaevien S.;
- Tolić, Nikola;
- Grigoriev, Igor V.;
- Tsang, Adrian;
- Mäkelä, Miia R.;
- Snel, Berend;
- Peng, Mao;
- de Vries, Ronald P.
Publication type:
Article
Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-663
By:
- Patyshakuliyeva, Aleksandrina;
- Jurak, Edita;
- Kohler, Annegret;
- Baker, Adam;
- Battaglia, Evy;
- de Bruijn, Wouter;
- Burton, Kerry S.;
- Challen, Michael P.;
- Coutinho, Pedro M.;
- Eastwood, Daniel C.;
- Gruben, Birgit S.;
- Mäkelä, Miia R.;
- Martin, Francis;
- Nadal, Marina;
- van den Brink, Joost;
- Wiebenga, Ad;
- Miaomiao Zhou;
- Henrissat, Bernard;
- Kabel, Mirjam;
- Gruppen, Harry
Publication type:
Article
A comparative genomics study of 23 Aspergillus species from section Flavi.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-14051-y
By:
- Kjærbølling, Inge;
- Vesth, Tammi;
- Frisvad, Jens C.;
- Nybo, Jane L.;
- Theobald, Sebastian;
- Kildgaard, Sara;
- Petersen, Thomas Isbrandt;
- Kuo, Alan;
- Sato, Atsushi;
- Lyhne, Ellen K.;
- Kogle, Martin E.;
- Wiebenga, Ad;
- Kun, Roland S.;
- Lubbers, Ronnie J. M.;
- Mäkelä, Miia R.;
- Barry, Kerrie;
- Chovatia, Mansi;
- Clum, Alicia;
- Daum, Chris;
- Haridas, Sajeet
Publication type:
Article
Lignocellulose-converting enzyme activity profiles correlate with molecular systematics and phylogeny grouping in the incoherent genus Phlebia (Polyporales, Basidiomycota).
Published in:
BMC Microbiology, 2015, v. 15, p. 1, doi. 10.1186/s12866-015-0538-x
By:
- Kuuskeri, Jaana;
- Mäkelä, Miia R.;
- Isotalo, Jarkko;
- Oksanen, Ilona;
- Lundell, Taina
Publication type:
Article

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