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The integrated microbial genomes system: an expanding comparative analysis resource.
Published in:
Nucleic Acids Research, 2010, v. 38, p. D382, doi. 10.1093/nar/gkp887
By:
- Markowitz, Victor M.;
- Chen, I-Min A.;
- Palaniappan, Krishna;
- Ken Chu;
- Szeto, Ernest;
- Grechkin, Yuri;
- Ratner, Anna;
- Anderson, Iain;
- Lykidis, Athanasios;
- Mavromatis, Konstantinos;
- Ivanova, Natalia N.;
- Kyrpides, Nikos C.
Publication type:
Article
IMG/M: a data management and analysis system for metagenomes.
Published in:
Nucleic Acids Research, 2008, v. 36, p. D534
By:
- Markowitz, Victor M.;
- Ivanova, Natalia N.;
- Szeto, Ernest;
- Palaniappan, Krishna;
- Chu, Ken;
- Dalevi, Daniel;
- Chen, I-Min A.;
- Grechkin, Yuri;
- Dubchak, Inna;
- Anderson, Iain;
- Lykidis, Athanasios;
- Mavromatis, Konstantinos;
- Hugenholtz, Philip;
- Kyrpides, Nikos C.
Publication type:
Article
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions.
Published in:
Nucleic Acids Research, 2008, v. 36, p. D528
By:
- Markowitz, Victor M.;
- Szeto, Ernest;
- Palaniappan, Krishna;
- Grechkin, Yuri;
- Chu, Ken;
- Chen, I-Min A.;
- Dubchak, Inna;
- Anderson, Iain;
- Lykidis, Athanasios;
- Mavromatis, Konstantinos;
- Ivanova, Natalia N.;
- Kyrpides, Nikos C.
Publication type:
Article
Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 1, p. 122, doi. 10.1038/ismej.2010.125
By:
- Lykidis, Athanasios;
- Chen, Chia-Lung;
- Tringe, Susannah G;
- McHardy, Alice C;
- Copeland, Alex;
- Kyrpides, Nikos C;
- Hugenholtz, Philip;
- Macarie, Hervé;
- Olmos, Alejandro;
- Monroy, Oscar;
- Liu, Wen-Tso
Publication type:
Article
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.
Published in:
Nature Methods, 2010, v. 7, n. 6, p. 455, doi. 10.1038/nmeth.1457
By:
- Pati, Amrita;
- Ivanova, Natalia N.;
- Mikhailova, Natalia;
- Ovchinnikova, Galina;
- Hooper, Sean D.;
- Lykidis, Athanasios;
- Kyrpides, Nikos C.
Publication type:
Article
Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB<sup>T</sup>).
Published in:
Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 91, doi. 10.4056/sigs.2996379
By:
- Plugge, Caroline M.;
- Henstra, Anne M.;
- Worm, Petra;
- Swarts, Daan C.;
- Paulitsch-Fuchs, Astrid H.;
- Scholten, Johannes C.M.;
- Lykidis, Athanasios;
- Lapidus, Alla L.;
- Goltsman, Eugene;
- Kim, Edwin;
- McDonald, Erin;
- Rohlin, Lars;
- Crable, Bryan R.;
- Gunsalus, Robert P.;
- Stams, Alfons J.M.;
- McInerney, Michael J.
Publication type:
Article
Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria.
Published in:
PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039331
By:
- Anderson, Iain;
- Abt, Birte;
- Lykidis, Athanasios;
- Klenk, Hans-Peter;
- Kyrpides, Nikos;
- Ivanova, Natalia
Publication type:
Article
The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrade.
Published in:
PLoS ONE, 2010, v. 5, n. 3, p. 1, doi. 10.1371/journal.pone.0009729
By:
- Lykidis, Athanasios;
- Pérez-Pantoja, Danilo;
- Ledger, Thomas;
- Mavromatis, Kostantinos;
- Anderson, Iain J.;
- Ivanova, Natalia N.;
- Hooper, Sean D.;
- Lapidus, Alla;
- Lucas, Susan;
- González, Bernardo;
- Kyrpides, Nikos C.
Publication type:
Article
Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens.
Published in:
PLoS ONE, 2009, v. 4, n. 6, p. 1, doi. 10.1371/journal.pone.0005797
By:
- Anderson, Iain;
- Ulrich, Luke E.;
- Lupa, Boguslaw;
- Susanti, Dwi;
- Porat, Iris;
- Hooper, Sean D.;
- Lykidis, Athanasios;
- Sieprawska-Lupa, Magdalena;
- Dharmarajan, Lakshmi;
- Goltsman, Eugene;
- Lapidus, Alla;
- Saunders, Elizabeth;
- Han, Cliff;
- Land, Miriam;
- Lucas, Susan;
- Mukhopadhyay, Biswarup;
- Whitman, William B.;
- Woese, Carl;
- Bristow, James;
- Kyrpides, Nikos
Publication type:
Article
Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii.
Published in:
PLoS ONE, 2009, v. 4, n. 1, p. 1, doi. 10.1371/journal.pone.0004192
By:
- Mavromatis, Konstantinos;
- Ivanova, Natalia;
- Anderson, Iain;
- Lykidis, Athanasios;
- Hooper, Sean D.;
- Hui Sun;
- Kunin, Victor;
- Lapidus, Alla;
- Hugenholtz, Philip;
- Patel, Bharat;
- Kyrpides, Nikos C.
Publication type:
Article
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Published in:
Nature, 2009, v. 462, n. 7276, p. 1056, doi. 10.1038/nature08656
By:
- Dongying Wu;
- Hugenholtz, Philip;
- Mavromatis, Konstantinos;
- Pukall, Rüdiger;
- Dalin, Eileen;
- Ivanova, Natalia N.;
- Kunin, Victor;
- Goodwin, Lynne;
- Wu, Martin;
- Tindall, Brian J.;
- Hooper, Sean D.;
- Pati, Amrita;
- Lykidis, Athanasios;
- Spring, Stefan;
- Anderson, Iain J.;
- D'haeseleer, Patrik;
- Zemla, Adam;
- Singer, Mitchell;
- Lapidus, Alla;
- Nolan, Matt
Publication type:
Article
The integrated microbial genomes (IMG) system.
Published in:
Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d344, doi. 10.1093/nar/gkj024
By:
- Markowitz, Victor M.;
- Korzeniewski, Frank;
- Palaniappan, Krishna;
- Szeto, Ernest;
- Werner, Greg;
- Padki, Anu;
- Zhao, Xueling;
- Dubchak, Inna;
- Hugenholtz, Philip;
- Anderson, Iain;
- Lykidis, Athanasios;
- Mavromatis, Konstantinos;
- Ivanova, Natalia;
- Kyrpides, Nikos C.
Publication type:
Article
The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.
Published in:
Environmental Microbiology, 2010, v. 12, n. 10, p. 2738, doi. 10.1111/j.1462-2920.2010.02242.x
By:
- Junier, Pilar;
- Junier, Thomas;
- Podell, Sheila;
- Sims, David R.;
- Detter, John C.;
- Lykidis, Athanasios;
- Han, Cliff S.;
- Wigginton, Nicholas S.;
- Gaasterland, Terry;
- Bernier-Latmani, Rizlan
Publication type:
Article
The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production.
Published in:
Environmental Microbiology, 2010, v. 12, n. 8, p. 2289, doi. 10.1111/j.1462-2920.2010.02237.x
By:
- Sieber, Jessica R.;
- Sims, David R.;
- Han, Cliff;
- Kim, Edwin;
- Lykidis, Athanasios;
- Lapidus, Alla L.;
- McDonnald, Erin;
- Rohlin, Lars;
- Culley, David E.;
- Gunsalus, Robert;
- McInerney, Michael J.
Publication type:
Article
Genomics and evolution of eukaryotic phospholipid biosynthesis.
Published in:
FASEB Journal, 2007, v. 21, n. 6, p. A976, doi. 10.1096/fasebj.21.6.a976
By:
- Lykidis, Athanasios
Publication type:
Article
Localization and regulation of mouse pantothenate kinase 2
Published in:
FEBS Letters, 2007, v. 581, n. 24, p. 4639, doi. 10.1016/j.febslet.2007.08.056
By:
- Leonardi, Roberta;
- Zhang, Yong-Mei;
- Lykidis, Athanasios;
- Rock, Charles O.;
- Jackowski, Suzanne
Publication type:
Article

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