Found: 12

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  • Impact of sequencing depth in ChIP-seq experiments.

    Published in:
    Nucleic Acids Research, 2015, v. 43, n. 9, p. 1, doi. 10.1093/nar/gku178
    By:
    • Youngsook L. Jung;
    • Luquette, Lovelace J.;
    • Ho, Joshua W. K.;
    • Ferrari, Francesco;
    • Tolstorukov, Michael;
    • Aki Minoda;
    • Issner, Robbyn;
    • Epstein, Charles B.;
    • Karpen, Gary H.;
    • Kuroda, Mitzi I.;
    • Park, Peter J.
    Publication type:
    Article

  • Impact of sequencing depth in ChIP-seq experiments.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. 9, p. e74, doi. 10.1093/nar/gku178
    By:
    • Jung, Youngsook L.;
    • Luquette, Lovelace J.;
    • Ho, Joshua W.K.;
    • Ferrari, Francesco;
    • Tolstorukov, Michael;
    • Minoda, Aki;
    • Issner, Robbyn;
    • Epstein, Charles B.;
    • Karpen, Gary H.;
    • Kuroda, Mitzi I.;
    • Park, Peter J.
    Publication type:
    Article

  • Accurate detection of mosaic variants in sequencing data without matched controls.

    Published in:
    Nature Biotechnology, 2020, v. 38, n. 3, p. 314, doi. 10.1038/s41587-019-0368-8
    By:
    • Dou, Yanmei;
    • Kwon, Minseok;
    • Rodin, Rachel E.;
    • Cortés-Ciriano, Isidro;
    • Doan, Ryan;
    • Luquette, Lovelace J.;
    • Galor, Alon;
    • Bohrson, Craig;
    • Walsh, Christopher A.;
    • Park, Peter J.
    Publication type:
    Article

  • Systematic identification of synergistic drug pairs targeting HIV.

    Published in:
    Nature Biotechnology, 2012, v. 30, n. 11, p. 1125, doi. 10.1038/nbt.2391
    By:
    • Tan, Xu;
    • Hu, Long;
    • Luquette, Lovelace J;
    • Gao, Geng;
    • Liu, Yifang;
    • Qu, Hongjing;
    • Xi, Ruibin;
    • Lu, Zhi John;
    • Park, Peter J;
    • Elledge, Stephen J
    Publication type:
    Article

  • Orthogonal NGS for High Throughput Clinical Diagnostics.

    Published in:
    Scientific Reports, 2016, p. 24650, doi. 10.1038/srep24650
    By:
    • Chennagiri, Niru;
    • White, Eric J.;
    • Frieden, Alexander;
    • Lopez, Edgardo;
    • Lieber, Daniel S.;
    • Nikiforov, Anastasia;
    • Ross, Tristen;
    • Batorsky, Rebecca;
    • Hansen, Sherry;
    • Lip, Va;
    • Luquette, Lovelace J.;
    • Mauceli, Evan;
    • Margulies, David;
    • Milos, Patrice M.;
    • Napolitano, Nichole;
    • Nizzari, Marcia M.;
    • Yu, Timothy;
    • Thompson, John F.
    Publication type:
    Article

  • Identification of somatic mutations in single cell DNA-seq using a spatial model of allelic imbalance.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11857-8
    By:
    • Luquette, Lovelace J.;
    • Bohrson, Craig L.;
    • Sherman, Max A.;
    • Park, Peter J.
    Publication type:
    Article

  • rSW-seq: Algorithm for detection of copy numberalterations in deep sequencing data.

    Published in:
    BMC Bioinformatics, 2010, v. 11, p. 432, doi. 10.1186/1471-2105-11-432
    By:
    • Tae-Min Kim;
    • Luquette, Lovelace J.;
    • Ruibin Xi;
    • Park, Peter J.
    Publication type:
    Article

  • Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

    Published in:
    Nature, 2011, v. 471, n. 7339, p. 480, doi. 10.1038/nature09725
    By:
    • Kharchenko, Peter V.;
    • Alekseyenko, Artyom A.;
    • Schwartz, Yuri B.;
    • Minoda, Aki;
    • Riddle, Nicole C.;
    • Ernst, Jason;
    • Sabo, Peter J.;
    • Larschan, Erica;
    • Gorchakov, Andrey A.;
    • Gu, Tingting;
    • Linder-Basso, Daniela;
    • Plachetka, Annette;
    • Shanower, Gregory;
    • Tolstorukov, Michael Y.;
    • Luquette, Lovelace J.;
    • Xi, Ruibin;
    • Jung, Youngsook L.;
    • Park, Richard W.;
    • Bishop, Eric P.;
    • Canfield, Theresa K.
    Publication type:
    Article

  • An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

    Published in:
    Genome Biology, 2014, v. 15, n. 2, p. R53, doi. 10.1186/gb-2014-15-3-r53
    By:
    • Brownstein, Catherine A.;
    • Beggs, Alan H.;
    • Homer, Nils;
    • Merriman, Barry;
    • Yu, Timothy W.;
    • Flannery, Katherine C.;
    • DeChene, Elizabeth T.;
    • Towne, Meghan C.;
    • Savage, Sarah K.;
    • Price, Emily N.;
    • Holm, Ingrid A.;
    • Luquette, Lovelace J.;
    • Lyon, Elaine;
    • Majzoub, Joseph;
    • Neupert, Peter;
    • McCallie Jr., David;
    • Szolovits, Peter;
    • Willard, Huntington F.;
    • Mendelsohn, Nancy J.;
    • Temme, Renee
    Publication type:
    Article

  • Analysis of somatic retrotransposition in human cancers.

    Published in:
    2012
    By:
    • Eunjung Lee;
    • Iskow, Rebecca;
    • Lixing Yang;
    • Gokcumen, Omer;
    • Haseley, Psalm;
    • Luquette III, Lovelace J.;
    • Lohr, Jens G.;
    • Harris, Christopher C.;
    • Li Ding;
    • Wilson, Richard K.;
    • Wheeler, David A.;
    • Gibbs, Richard A.;
    • Kucherlapati, Raju;
    • Lee, Charles;
    • Kharchenko, Peter V.;
    • Park, Peter J.
    Publication type:
    Abstract

  • Global impact of somatic structural variation on the DNA methylome of human cancers.

    Published in:
    Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1818-9
    By:
    • Zhang, Yiqun;
    • Yang, Lixing;
    • Kucherlapati, Melanie;
    • Hadjipanayis, Angela;
    • Pantazi, Angeliki;
    • Bristow, Christopher A.;
    • Lee, Eunjung Alice;
    • Mahadeshwar, Harshad S.;
    • Tang, Jiabin;
    • Zhang, Jianhua;
    • Seth, Sahil;
    • Lee, Semin;
    • Ren, Xiaojia;
    • Song, Xingzhi;
    • Sun, Huandong;
    • Seidman, Jonathan;
    • Luquette, Lovelace J.;
    • Xi, Ruibin;
    • Chin, Lynda;
    • Protopopov, Alexei
    Publication type:
    Article

  • COSMOS: Python library for massively parallel workflows.

    Published in:
    Bioinformatics, 2014, v. 30, n. 20, p. 2956, doi. 10.1093/bioinformatics/btu385
    By:
    • Gafni, Erik;
    • Luquette, Lovelace J.;
    • Lancaster, Alex K.;
    • Hawkins, Jared B.;
    • Jung, Jae-Yoon;
    • Souilmi, Yassine;
    • Wall, Dennis P.;
    • Tonellato, Peter J.
    Publication type:
    Article