Found: 9

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  • A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency.

    Published in:
    Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02316-z
    By:
    • Jones, Wendell;
    • Gong, Binsheng;
    • Novoradovskaya, Natalia;
    • Li, Dan;
    • Kusko, Rebecca;
    • Richmond, Todd A.;
    • Johann, Donald J.;
    • Bisgin, Halil;
    • Sahraeian, Sayed Mohammad Ebrahim;
    • Bushel, Pierre R.;
    • Pirooznia, Mehdi;
    • Wilkins, Katherine;
    • Chierici, Marco;
    • Bao, Wenjun;
    • Basehore, Lee Scott;
    • Lucas, Anne Bergstrom;
    • Burgess, Daniel;
    • Butler, Daniel J.;
    • Cawley, Simon;
    • Chang, Chia-Jung
    Publication type:
    Article

  • Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design.

    Published in:
    BMC Biotechnology, 2016, v. 16, p. 1, doi. 10.1186/s12896-016-0281-x
    By:
    • Pine, P. Scott;
    • Munro, Sarah A.;
    • Parsons, Jerod R.;
    • McDaniel, Jennifer;
    • Lucas, Anne Bergstrom;
    • Lozach, Jean;
    • Myers, Timothy G.;
    • Qin Su;
    • Jacobs-Helber, Sarah M.;
    • Salit, Marc
    Publication type:
    Article

  • lincRNAs act in the circuitry controlling pluripotency and differentiation.

    Published in:
    Nature, 2011, v. 477, n. 7364, p. 295, doi. 10.1038/nature10398
    By:
    • Guttman, Mitchell;
    • Donaghey, Julie;
    • Carey, Bryce W.;
    • Garber, Manuel;
    • Grenier, Jennifer K.;
    • Munson, Glen;
    • Young, Geneva;
    • Lucas, Anne Bergstrom;
    • Ach, Robert;
    • Bruhn, Laurakay;
    • Yang, Xiaoping;
    • Amit, Ido;
    • Meissner, Alexander;
    • Regev, Aviv;
    • Rinn, John L.;
    • Root, David E.;
    • Lander, Eric S.
    Publication type:
    Article

  • Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing.

    Published in:
    Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03741-y
    By:
    • Gong, Binsheng;
    • Li, Dan;
    • Łabaj, Paweł P.;
    • Pan, Bohu;
    • Novoradovskaya, Natalia;
    • Thierry-Mieg, Danielle;
    • Thierry-Mieg, Jean;
    • Chen, Guangchun;
    • Bergstrom Lucas, Anne;
    • LoCoco, Jennifer S.;
    • Richmond, Todd A.;
    • Tseng, Elizabeth;
    • Kusko, Rebecca;
    • Happe, Scott;
    • Mercer, Timothy R.;
    • Pabón-Peña, Carlos;
    • Salmans, Michael;
    • Tilgner, Hagen U.;
    • Xiao, Wenzhong;
    • Johann Jr, Donald J.
    Publication type:
    Article

  • Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue.

    Published in:
    Nature Biotechnology, 2022, v. 40, n. 7, p. 1082, doi. 10.1038/s41587-022-01231-3
    By:
    • Hardwick, Simon A.;
    • Hu, Wen;
    • Joglekar, Anoushka;
    • Fan, Li;
    • Collier, Paul G.;
    • Foord, Careen;
    • Balacco, Jennifer;
    • Lanjewar, Samantha;
    • Sampson, Maureen McGuirk;
    • Koopmans, Frank;
    • Prjibelski, Andrey D.;
    • Mikheenko, Alla;
    • Belchikov, Natan;
    • Jarroux, Julien;
    • Lucas, Anne Bergstrom;
    • Palkovits, Miklós;
    • Luo, Wenjie;
    • Milner, Teresa A.;
    • Ndhlovu, Lishomwa C.;
    • Smit, August B.
    Publication type:
    Article

  • Evaluation of external RNA controls for the assessment of microarray performance.

    Published in:
    Nature Biotechnology, 2006, v. 24, p. 1132, doi. 10.1038/nbt1237
    By:
    • Weida Tong;
    • Lucas, Anne Bergstrom;
    • Shippy, Richard;
    • Xiaohui Fan;
    • Hong Fang;
    • Huixiao Hong;
    • Orr, Michael S.;
    • Tzu-Ming Chu;
    • Xu Guo;
    • Collins, Patrick J.;
    • Sun, Yongming Andrew;
    • Sue-Jane Wang;
    • Wenjun Bao;
    • Wolfinger, Russell D.;
    • Shchegrova, Svetlana;
    • Lei Guo;
    • Warrington, Janet A.;
    • Leming Shi
    Publication type:
    Article

  • Using RNA sample titrations to assess microarray platform performance and normalization techniques.

    Published in:
    Nature Biotechnology, 2006, v. 24, p. 1123, doi. 10.1038/nbt1241
    By:
    • Shippy, Richard;
    • Fulmer-Smentek, Stephanie;
    • Jensen, Roderick V.;
    • Jones, Wendell D.;
    • Wolber, Paul K.;
    • Johnson, Charles D.;
    • Pine, P Scott;
    • Boysen, Cecilie;
    • Xu Guo;
    • Chudin, Eugene;
    • Sun, Yongming Andrew;
    • Willey, James C.;
    • Thierry-Mieg, Jean;
    • Thierry-Mieg, Danielle;
    • Setterquist, Robert A.;
    • Wilson, Mike;
    • Lucas, Anne Bergstrom;
    • Novoradovskaya, Natalia;
    • Papallo, Adam;
    • Turpaz, Yaron
    Publication type:
    Article

  • Evaluation of external RNA controls for the assessment of microarray performance.

    Published in:
    Nature Biotechnology, 2006, v. 24, n. 9, p. 1132, doi. 10.1038/nbt1237
    By:
    • Weida Tong;
    • Lucas, Anne Bergstrom;
    • Shippy, Richard;
    • Xiaohui Fan;
    • Hong Fang;
    • Huixiao Hong;
    • Orr, Michael S.;
    • Tzu-Ming Chu;
    • Xu Guo;
    • Collins, Patrick J.;
    • Sun, Yongming Andrew;
    • Sue-Jane Wang;
    • Wenjun Bao;
    • Wolfinger, Russell D.;
    • Shchegrova, Svetlana;
    • Lei Guo;
    • Warrington, Janet A.;
    • Leming Shi
    Publication type:
    Article

  • Using RNA sample titrations to assess microarray platform performance and normalization techniques.

    Published in:
    Nature Biotechnology, 2006, v. 24, n. 9, p. 1123, doi. 10.1038/nbt1241
    By:
    • Shippy, Richard;
    • Fulmer-Smentek, Stephanie;
    • Jensen, Roderick V.;
    • Jones, Wendell D.;
    • Wolber, Paul K.;
    • Johnson, Charles D.;
    • Pine, P. Scott;
    • Boysen, Cecilie;
    • Xu Guo;
    • Chudin, Eugene;
    • Sun, Yongming Andrew;
    • Willey, James C.;
    • Thierry-Mieg, Jean;
    • Thierry-Mieg, Danielle;
    • Setterquist, Robert A.;
    • Wilson, Mike;
    • Lucas, Anne Bergstrom;
    • Novoradovskaya, Natalia;
    • Papallo, Adam;
    • Turpaz, Yaron
    Publication type:
    Article