Works by Lu, Zhiyong

Results: 199

Text mining for precision medicine: automating disease-mutation relationship extraction from biomedical literature.

Published in:

2016

By:

Singhal, Ayush;
Simmons, Michael;
Zhiyong Lu;
Lu, Zhiyong

Publication type:

journal article

Formation of a Metal-Organic Framework with High Surface Area and Gas Uptake by Breaking Edges Off Truncated Cuboctahedral Cages.

Published in:

Angewandte Chemie, 2013, v. 125, n. 43, p. 11492, doi. 10.1002/ange.201302715

By:

Yun, Ruirui;
Lu, Zhiyong;
Pan, Yi;
You, Xiaozeng;
Bai, Junfeng

Publication type:

Article

tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 80, doi. 10.1093/bioinformatics/btx541

By:

Wei, Chih-Hsuan;
Phan, Lon;
Feltz, Juliana;
Maiti, Rama;
Hefferon, Tim;
Lu, Zhiyong

Publication type:

Article

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3454, doi. 10.1093/bioinformatics/btx439

By:

Poux, Sylvain;
Arighi, Cecilia N.;
Magrane, Michele;
Bateman, Alex;
Chih-Hsuan Wei;
Zhiyong Lu;
Boutet, Emmanuel;
Hema Bye-A.-Jee;
Famiglietti, Maria Livia;
Roechert, Bernd

Publication type:

Article

TaggerOne: joint named entity recognition and normalization with semi-Markov Models.

Published in:

Bioinformatics, 2016, v. 32, n. 18, p. 2839, doi. 10.1093/bioinformatics/btw343

By:

Leaman, Robert;
Zhiyong Lu

Publication type:

Article

Beyond accuracy: creating interoperable and scalable text-mining web services.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. 1907, doi. 10.1093/bioinformatics/btv760

By:

Chih-Hsuan Wei;
Leaman, Robert;
Zhiyong Lu

Publication type:

Article

DNorm: disease name normalization with pairwise learning to rank.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2909, doi. 10.1093/bioinformatics/btt474

By:

Leaman, Robert;
Islamaj Doğan, Rezarta;
Lu, Zhiyong

Publication type:

Article

tmVar: a text mining approach for extracting sequence variants in biomedical literature.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1433, doi. 10.1093/bioinformatics/btt156

By:

Wei, Chih-Hsuan;
Harris, Bethany R.;
Kao, Hung-Yu;
Lu, Zhiyong

Publication type:

Article

Extraction of data deposition statements from the literature: a method for automatically tracking research results.

Published in:

Bioinformatics, 2011, v. 27, n. 23, p. 3306

By:

Névéol, Aurélie;
Wilbur, W. John;
Lu, Zhiyong

Publication type:

Article

Click-words: learning to predict document keywords from a user perspective.

Published in:

Bioinformatics, 2010, v. 26, n. 21, p. 2767, doi. 10.1093/bioinformatics/btq459

By:

Doğan, Rezarta Islamaj;
Zhiyong Lu

Publication type:

Article

Identifying related journals through log analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3038, doi. 10.1093/bioinformatics/btp529

By:

Zhiyong Lu;
Xie, Natalie;
Wilbur, W. John

Publication type:

Article

High-Accuracy Pseudo-Random Code Laser Ranging Method Based on Data Shifting and Parameter Calibration of Phase Discriminator.

Published in:

Photonics, 2025, v. 12, n. 2, p. 159, doi. 10.3390/photonics12020159

By:

Li, Chaoyang;
Yang, Fei;
Sun, Jianfeng;
Lu, Zhiyong;
Zhou, Yu;
Qian, Chenxiang;
Chen, Weibiao

Publication type:

Article

Dadnet: dual-attention detection network for crack segmentation on tomb murals.

Published in:

Heritage Science, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40494-024-01474-0

By:

Wu, Meng;
Chai, Ruochang;
Zhang, Yongqin;
Lu, Zhiyong

Publication type:

Article

50.4: Halo Effect Measurement for Mini‐LED Backlight Liquid Crystal Displays.

Published in:

SID Symposium Digest of Technical Papers, 2023, v. 54, p. 365, doi. 10.1002/sdtp.16305

By:

Xinyu, Wang;
Zhiyong, Lu;
Guofeng, Kuang;
Guofu, Tang;
Chao, Liu;
Qinquan, Zhang;
Qiaozhen, Lian;
Xuerun, Huang

Publication type:

Article

Ascle—A Python Natural Language Processing Toolkit for Medical Text Generation: Development and Evaluation Study.

Published in:

Journal of Medical Internet Research, 2024, v. 26, p. 1, doi. 10.2196/60601

By:

Yang, Rui;
Zeng, Qingcheng;
You, Keen;
Qiao, Yujie;
Huang, Lucas;
Hsieh, Chia-Chun;
Rosand, Benjamin;
Goldwasser, Jeremy;
Dave, Amisha;
Keenan, Tiarnan;
Ke, Yuhe;
Hong, Chuan;
Liu, Nan;
Chew, Emily;
Radev, Dragomir;
Lu, Zhiyong;
Xu, Hua;
Chen, Qingyu;
Li, Irene

Publication type:

Article

Quality of Answers of Generative Large Language Models Versus Peer Users for Interpreting Laboratory Test Results for Lay Patients: Evaluation Study.

Published in:

Journal of Medical Internet Research, 2024, v. 26, p. 1, doi. 10.2196/56655

By:

He, Zhe;
Bhasuran, Balu;
Jin, Qiao;
Tian, Shubo;
Hanna, Karim;
Shavor, Cindy;
Arguello, Lisbeth Garcia;
Murray, Patrick;
Lu, Zhiyong

Publication type:

Article

Rapid and high‐resolution handheld X‐ray backscatter subsurface imaging for field archaeology prediction.

Published in:

Archaeometry, 2025, v. 67, n. 3, p. 738, doi. 10.1111/arcm.13039

By:

Shi, Changrong;
Dong, Minghao;
Xiao, Yongshun;
Xu, Wenzhong;
Lu, Zhiyong;
Zhang, Yongjian;
Hu, Chunbo;
Shi, Yanxin;
Wang, Bo;
Ding, Xifeng

Publication type:

Article

Risk model in stage IBI-IIB cervical cancer with positive node after radical hysterectomy.

Published in:

OncoTargets & Therapy, 2016, v. 9, p. 3171, doi. 10.2147/OTT.S94151

By:

Zhilan Chen;
Kecheng Huang;
Zhiyong Lu;
Song Deng;
Jiaqiang Xiong;
Jia Huang;
Xiong Li;
Fangxu Tang;
Zhihao Wang;
Haiying Sun;
Lin Wang;
Shasha Zhou;
Xiaoli Wang;
Yao Jia;
Ting Hu;
Juan Gui;
Dongyi Wan;
Ding Ma;
Shuang Li;
Shixuan Wang

Publication type:

Article

Ten tips for a text-mining-ready article: How to improve automated discoverability and interpretability.

Published in:

PLoS Biology, 2020, v. 18, n. 6, p. 1, doi. 10.1371/journal.pbio.3000716

By:

Leaman, Robert;
Wei, Chih-Hsuan;
Allot, Alexis;
Lu, Zhiyong

Publication type:

Article

The Utilization of Amide Groups To Expand and Functionalize Metal-Organic Frameworks Simultaneously.

Published in:

Chemistry - A European Journal, 2016, v. 22, n. 18, p. 6277, doi. 10.1002/chem.201504907

By:

Lu, Zhiyong;
Bai, Junfeng;
Hang, Cheng;
Meng, Fei;
Liu, Wenlong;
Pan, Yi;
You, Xiaozeng

Publication type:

Article

The Utilization of Amide Groups to Expand and Functionalize Metal-Organic Frameworks Simultaneously.

Published in:

Chemistry - A European Journal, 2016, v. 22, n. 18, p. 6129, doi. 10.1002/chem.201601034

By:

Lu, Zhiyong;
Bai, Junfeng;
Hang, Cheng;
Meng, Fei;
Liu, Wenlong;
Pan, Yi;
You, Xiaozeng

Publication type:

Article

Cover Picture: The Utilization of Amide Groups To Expand and Functionalize Metal-Organic Frameworks Simultaneously (Chem. Eur. J. 18/2016).

Published in:

Chemistry - A European Journal, 2016, v. 22, n. 18, p. 6125, doi. 10.1002/chem.201601009

By:

Lu, Zhiyong;
Bai, Junfeng;
Hang, Cheng;
Meng, Fei;
Liu, Wenlong;
Pan, Yi;
You, Xiaozeng

Publication type:

Article

Modified acrylic-based superabsorbents with hydrophobic monomers: synthesis, characterization and swelling behaviors.

Published in:

Journal of Polymer Research, 2011, v. 18, n. 5, p. 897, doi. 10.1007/s10965-010-9487-0

By:

Liu, Xingli;
Li, Xiaolan;
Lu, Zhiyong;
Miao, Xinping;
Feng, Yujun

Publication type:

Article

Leveraging long context in retrieval augmented language models for medical question answering.

Published in:

NPJ Digital Medicine, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s41746-025-01651-w

By:

Zhang, Gongbo;
Xu, Zihan;
Jin, Qiao;
Chen, Fangyi;
Fang, Yilu;
Liu, Yi;
Rousseau, Justin F.;
Xu, Ziyang;
Lu, Zhiyong;
Weng, Chunhua;
Peng, Yifan

Publication type:

Article

Preliminary analysis of the impact of lab results on large language model generated differential diagnoses.

Published in:

NPJ Digital Medicine, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s41746-025-01556-8

By:

Bhasuran, Balu;
Jin, Qiao;
Xie, Yuzhang;
Yang, Carl;
Hanna, Karim;
Costa, Jennifer;
Shavor, Cindy;
Han, Wenshan;
Lu, Zhiyong;
He, Zhe

Publication type:

Article

Author Correction: Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence modeling.

Published in:

2024

By:

Holste, Gregory;
Lin, Mingquan;
Zhou, Ruiwen;
Wang, Fei;
Liu, Lei;
Yan, Qi;
Van Tassel, Sarah H.;
Kovacs, Kyle;
Chew, Emily Y.;
Lu, Zhiyong;
Wang, Zhangyang;
Peng, Yifan

Publication type:

Correction Notice

Closing the gap between open source and commercial large language models for medical evidence summarization.

Published in:

NPJ Digital Medicine, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s41746-024-01239-w

By:

Zhang, Gongbo;
Jin, Qiao;
Zhou, Yiliang;
Wang, Song;
Idnay, Betina;
Luo, Yiming;
Park, Elizabeth;
Nestor, Jordan G.;
Spotnitz, Matthew E.;
Soroush, Ali;
Campion Jr., Thomas R.;
Lu, Zhiyong;
Weng, Chunhua;
Peng, Yifan

Publication type:

Article

Author Name Disambiguation for PubMed.

Published in:

2014

By:

Wanli Liu;
Doğan, Rezarta Islamaj;
Kim, Sun;
Comeau, Donald C.;
Won Kim;
Yeganova, Lana;
Zhiyong Lu;
Wilbur, W. John

Publication type:

Journal Article

Text Mining for Translational Bioinformatics.

Published in:

BioMed Research International, 2015, v. 2015, p. 1, doi. 10.1155/2015/368264

By:

Dai, Hong-Jie;
Wei, Chih-Hsuan;
Kao, Hung-Yu;
Liu, Rey-Long;
Tsai, Richard Tzong-Han;
Lu, Zhiyong

Publication type:

Article

GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains.

Published in:

2015

By:

Wei, Chih-Hsuan;
Kao, Hung-Yu;
Lu, Zhiyong

Publication type:

journal article

Improving chemical disease relation extraction with rich features and weakly labeled data.

Published in:

Journal of Cheminformatics, 2016, v. 8, p. 1, doi. 10.1186/s13321-016-0165-z

By:

Yifan Peng;
Chih-Hsuan Wei;
Zhiyong Lu

Publication type:

Article

Association between DAPK1 Promoter Methylation and Cervical Cancer: A Meta-Analysis.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107272

By:

Xiong, Jiaqiang;
Li, Ya;
Huang, Kecheng;
Lu, Meixia;
Shi, Hao;
Ma, Lanfang;
Luo, Aiyue;
Yang, Shuhong;
Lu, Zhiyong;
Zhang, Jinjin;
Yang, Lilan;
Wang, Shixuan

Publication type:

Article

Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0055814

By:

Van Landeghem, Sofie;
Björne, Jari;
Wei, Chih-Hsuan;
Hakala, Kai;
Pyysalo, Sampo;
Ananiadou, Sophia;
Kao, Hung-Yu;
Lu, Zhiyong;
Salakoski, Tapio;
Van de Peer, Yves;
Ginter, Filip

Publication type:

Article

SR4GN: A Species Recognition Software Tool for Gene Normalization.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038460

By:

Chih-Hsuan Wei;
Hung-Yu Kao;
Zhiyong Lu

Publication type:

Article

Comparison of State-of-the-Art Neural Network Survival Models with the Pooled Cohort Equations for Cardiovascular Disease Risk Prediction.

Published in:

BMC Medical Research Methodology, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12874-022-01829-w

By:

Deng, Yu;
Liu, Lei;
Jiang, Hongmei;
Peng, Yifan;
Wei, Yishu;
Zhou, Zhiyang;
Zhong, Yizhen;
Zhao, Yun;
Yang, Xiaoyun;
Yu, Jingzhi;
Lu, Zhiyong;
Kho, Abel;
Ning, Hongyan;
Allen, Norrina B.;
Wilkins, John T.;
Liu, Kiang;
Lloyd-Jones, Donald M.;
Zhao, Lihui

Publication type:

Article

Scaling up data curation using deep learning: An application to literature triage in genomic variation resources.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006390

By:

Lee, Kyubum;
Famiglietti, Maria Livia;
McMahon, Aoife;
Wei, Chih-Hsuan;
MacArthur, Jacqueline Ann Langdon;
Poux, Sylvain;
Breuza, Lionel;
Bridge, Alan;
Cunningham, Fiona;
Xenarios, Ioannis;
Lu, Zhiyong

Publication type:

Article

EnzChemRED, a rich enzyme chemistry relation extraction dataset.

Published in:

Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03835-7

By:

Lai, Po-Ting;
Coudert, Elisabeth;
Aimo, Lucila;
Axelsen, Kristian;
Breuza, Lionel;
de Castro, Edouard;
Feuermann, Marc;
Morgat, Anne;
Pourcel, Lucille;
Pedruzzi, Ivo;
Poux, Sylvain;
Redaschi, Nicole;
Rivoire, Catherine;
Sveshnikova, Anastasia;
Wei, Chih-Hsuan;
Leaman, Robert;
Luo, Ling;
Lu, Zhiyong;
Bridge, Alan

Publication type:

Article

Mass spectrometry identification of the liquor contained in the plum vase excavated from Jurou Li’s Grave of the Jin Dynasty (1115-1234 CE) in Xi’an, Shannxi, China.

Published in:

Heritage Science, 2018, v. 6, n. 1, p. 1, doi. 10.1186/s40494-018-0210-5

By:

Zhu, Zhanyun;
Yu, Chunlei;
Miao, Yifei;
Lu, Zhiyong;
Yang, Junchang

Publication type:

Article

Large language models in biomedicine and health: current research landscape and future directions.

Published in:

Journal of the American Medical Informatics Association, 2024, v. 31, n. 9, p. 1801, doi. 10.1093/jamia/ocae202

By:

Lu, Zhiyong;
Peng, Yifan;
Cohen, Trevor;
Ghassemi, Marzyeh;
Weng, Chunhua;
Tian, Shubo

Publication type:

Article

Improving large language models for clinical named entity recognition via prompt engineering.

Published in:

Journal of the American Medical Informatics Association, 2024, v. 31, n. 9, p. 1812, doi. 10.1093/jamia/ocad259

By:

Hu, Yan;
Chen, Qingyu;
Du, Jingcheng;
Peng, Xueqing;
Keloth, Vipina Kuttichi;
Zuo, Xu;
Zhou, Yujia;
Li, Zehan;
Jiang, Xiaoqian;
Lu, Zhiyong;
Roberts, Kirk;
Xu, Hua

Publication type:

Article

Multimodal, multitask, multiattention (M3) deep learning detection of reticular pseudodrusen: Toward automated and accessible classification of age-related macular degeneration.

Published in:

2021

By:

Chen, Qingyu;
Keenan, Tiarnan D.L;
Allot, Alexis;
Peng, Yifan;
Agrón, Elvira;
Domalpally, Amitha;
Klaver, Caroline C. W;
Luttikhuizen, Daniel T;
Colyer, Marcus H;
Cukras, Catherine A;
Wiley, Henry E;
Magone, M Teresa;
Cousineau-Krieger, Chantal;
Wong, Wai T;
Zhu, Yingying;
Chew, Emily Y;
Lu, Zhiyong;
Group, for the AREDS2 Deep Learning Research;
Teresa Magone, M;
AREDS2 Deep Learning Research Group

Publication type:

journal article

Better synonyms for enriching biomedical search.

Published in:

2020

By:

Yeganova, Lana;
Kim, Sun;
Chen, Qingyu;
Balasanov, Grigory;
Wilbur, W John;
Lu, Zhiyong

Publication type:

journal article

ML-Net: multi-label classification of biomedical texts with deep neural networks.

Published in:

2019

By:

Du, Jingcheng;
Chen, Qingyu;
Peng, Yifan;
Xiang, Yang;
Tao, Cui;
Lu, Zhiyong

Publication type:

journal article

Recommending MeSH terms for annotating biomedical articles.

Published in:

Journal of the American Medical Informatics Association, 2011, v. 18, n. 5, p. 660, doi. 10.1136/amiajnl-2010-000055

By:

Minlie Huang;
Névéol, Aurélie;
Zhiyong Lu

Publication type:

Article

Extracting Rx information from clinical narrative.

Published in:

Journal of the American Medical Informatics Association, 2010, v. 17, n. 5, p. 536, doi. 10.1136/jamia.2010.003970

By:

Mark, James G.;
Bodenreider, Olivier;
Demner-Fushman, Dina;
Doğan, Rezarta Islamaj;
Lang, François-Michel;
Zhiyong Lu;
Névéol, Aurélie;
Peters, Lee;
Shooshan, Sonya E.;
Aronson, Alan R.

Publication type:

Article

Evaluating relevance ranking strategies for MEDLINE retrieval.

Published in:

2009

By:

Lu Z;
Kim W;
Wilbur WJ;
Lu, Zhiyong;
Kim, Won;
Wilbur, W John

Publication type:

journal article

Evaluating Relevance Ranking Strategies for MEDLINE Retrieval.

Published in:

Journal of the American Medical Informatics Association, 2009, v. 16, n. 1, p. 32

By:

ZHIYONG LU;
WON KIM;
WILBUR, W. JOHN

Publication type:

Article

Advances in Research of Collection and Detection Methods of Microplastics in Environment.

Published in:

Asian Agricultural Research, 2024, v. 16, n. 9, p. 23, doi. 10.19601/j.cnki.issn1943.9903.2024.09.006

By:

Yunshuang FU;
Zhen ZHAO;
Peng WAN;
Guoyan WEN;
Haibo FAN;
Cuizhi LI;
Zhiyong LU

Publication type:

Article

Sampling Methods and Countermeasures for Food Enterprises.

Published in:

Asian Agricultural Research, 2023, v. 15, n. 8, p. 55, doi. 10.1960/j.cnki.issn1943-9903.2023.08.012

By:

Peng WAN;
Zhen ZHAO;
Guoyan WEN;
Yunshuang FU;
Cuizhi LI;
Zhiyong LU

Publication type:

Article

Advances in the Research of Quality Management System of Dairy Enterprises.

Published in:

Asian Agricultural Research, 2023, v. 15, n. 6, p. 24, doi. 10.19601/j.cnki.issn1943-9903.2023.06.005

By:

Peng WAN;
Zhen ZHAO;
Guoyan WEN;
Ynnshnang FU;
Cuizhi LI;
Zhiyong LU

Publication type:

Article