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Improved anticancer drug response prediction in cell lines using matrix factorization with similarity regularization.
- Published in:
- 2017
- By:
- Publication type:
- journal article
ON THE CONJUGACY PROBLEM FOR ONE-RELATOR MONOIDS WITH ELEMENTS OF FINITE ORDER.
- Published in:
- International Journal of Algebra & Computation, 1992, v. 2, n. 2, p. 209, doi. 10.1142/S021819679200013X
- By:
- Publication type:
- Article
Two combinatorial optimization problems for SNP discovery using base-specific cleavage and mass spectrometry.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-6-S2-S5
- By:
- Publication type:
- Article
Profiling the transcription factor regulatory networks of human cell types.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 20, p. 12380, doi. 10.1093/nar/gku923
- By:
- Publication type:
- Article
The Bourque distances for mutation trees of cancers.
- Published in:
- Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00188-3
- By:
- Publication type:
- Article
Hi-GeoMVP: a hierarchical geometry-enhanced deep learning model for drug response prediction.
- Published in:
- Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae204
- By:
- Publication type:
- Article
Predicting chemotherapeutic drug combinations through gene network profiling.
- Published in:
- Scientific Reports, 2016, p. 18658, doi. 10.1038/srep18658
- By:
- Publication type:
- Article
Inverted Expression Profiles of Sex-Biased Genes in Response to Toxicant Perturbations and Diseases.
- Published in:
- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056668
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- Publication type:
- Article
Toxicogenomic Analysis Suggests Chemical-Induced Sexual Dimorphism in the Expression of Metabolic Genes in Zebrafish Liver.
- Published in:
- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051971
- By:
- Publication type:
- Article
Existence of Inverted Profile in Chemically Responsive Molecular Pathways in the Zebrafish Liver.
- Published in:
- PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027819
- By:
- Publication type:
- Article
Greedy Selection of Species for Ancestral State Reconstruction on Phylogenies: Elimination Is Better than Insertion.
- Published in:
- PLoS ONE, 2010, v. 5, n. 2, p. 1, doi. 10.1371/journal.pone.0008985
- By:
- Publication type:
- Article
A program to compute the soft Robinson--Foulds distance between phylogenetic networks.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3500-5
- By:
- Publication type:
- Article
Two results about the Sackin and Colless indices for phylogenetic trees and their shapes.
- Published in:
- Journal of Mathematical Biology, 2022, v. 85, n. 6/7, p. 1, doi. 10.1007/s00285-022-01831-2
- By:
- Publication type:
- Article
Analyzing the Fitch Method for Reconstructing Ancestral States on Ultrametric Phylogenetic Trees.
- Published in:
- Bulletin of Mathematical Biology, 2010, v. 72, n. 7, p. 1760, doi. 10.1007/s11538-010-9505-8
- By:
- Publication type:
- Article
Positive correlation between gene coexpression and positional clustering in the zebrafish genome.
- Published in:
- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-42
- By:
- Publication type:
- Article
A stable iterative method for refining discriminative gene clusters.
- Published in:
- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-S2-S18
- By:
- Publication type:
- Article
Genome-scale analysis of positional clustering of mouse testis-specific genes.
- Published in:
- BMC Genomics, 2005, v. 6, p. 7, doi. 10.1186/1471-2164-6-7
- By:
- Publication type:
- Article
Structural properties of the reconciliation space and their applications in enumerating nearlyoptimal reconciliations between a gene tree and a species tree.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 9, p. 1, doi. 10.1186/1471-2105-12-S9-S7
- By:
- Publication type:
- Article
Transcriptome Analysis of Cold Syndrome Using Microarray.
- Published in:
- American Journal of Chinese Medicine, 2007, v. 35, n. 4, p. 609, doi. 10.1142/S0192415X07005107
- By:
- Publication type:
- Article
A post-processing method for optimizing synthesis strategy for oligonucleotide microarrays.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. 17, p. e144, doi. 10.1093/nar/gni147
- By:
- Publication type:
- Article
Separating Auxiliary Arity Hierarchy of First-Order Incremental Evaluation Systems Using (3k+1)-ary Input Relations.
- Published in:
- International Journal of Foundations of Computer Science, 2000, v. 11, n. 4, p. 573, doi. 10.1142/S0129054100000302
- By:
- Publication type:
- Article
ZDOG: zooming in on dominating genes with mutations in cancer pathways.
- Published in:
- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3326-z
- By:
- Publication type:
- Article
Generating normal networks via leaf insertion and nearest neighbor interchange.
- Published in:
- BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-3209-3
- By:
- Publication type:
- Article
How much can deep learning improve prediction of the responses to drugs in cancer cell lines?
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab378
- By:
- Publication type:
- Article
A survey and systematic assessment of computational methods for drug response prediction.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 1, p. 232, doi. 10.1093/bib/bbz164
- By:
- Publication type:
- Article
Counting motifs in the human interactome.
- Published in:
- Nature Communications, 2013, v. 4, n. 8, p. 2241, doi. 10.1038/ncomms3241
- By:
- Publication type:
- Article
Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters.
- Published in:
- Genome Biology & Evolution, 2012, v. 4, n. 9, p. 586, doi. 10.1093/gbe/evs032
- By:
- Publication type:
- Article
Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters.
- Published in:
- Genome Biology & Evolution, 2012, v. 4, n. 4, p. 586, doi. 10.1093/gbe/evs032
- By:
- Publication type:
- Article
On Counting Tandem Duplication Trees.
- Published in:
- Molecular Biology & Evolution, 2004, v. 21, n. 6, p. 1160, doi. 10.1093/molbev/msh115
- By:
- Publication type:
- Article
Stage-specific protein-domain mutational profile of invasive ductal breast cancer.
- Published in:
- BMC Medical Genomics, 2020, v. 13, p. N.PAG, doi. 10.1186/s12920-020-00777-y
- By:
- Publication type:
- Article
More Taxa Are Not Necessarily Better for the Reconstruction of Ancestral Character States.
- Published in:
- Systematic Biology, 2008, v. 57, n. 4, p. 647, doi. 10.1080/10635150802203898
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- Publication type:
- Article
Divide-and-conquer approach for the exemplar breakpoint distance.
- Published in:
- Bioinformatics, 2005, v. 21, n. 10, p. 2171, doi. 10.1093/bioinformatics/bti327
- By:
- Publication type:
- Article
Good spaced seeds for homology search.
- Published in:
- Bioinformatics, 2004, v. 20, n. 7, p. 1053, doi. 10.1093/bioinformatics/bth037
- By:
- Publication type:
- Article
Cladogramer: incorporating haplotype frequency into cladogram analysis.
- Published in:
- Bioinformatics, 2001, v. 17, n. 5, p. 481, doi. 10.1093/bioinformatics/17.5.481
- By:
- Publication type:
- Article
WebPHYLIP: a web interface to PHYLIP.
- Published in:
- Bioinformatics, 1999, v. 15, n. 12, p. 1068, doi. 10.1093/bioinformatics/15.12.1068
- By:
- Publication type:
- Article
Fitness Profiling Links Topoisomerase II Regulation of Centromeric Integrity to Doxorubicin Resistance in Fission Yeast.
- Published in:
- Scientific Reports, 2015, p. 8400, doi. 10.1038/srep08400
- By:
- Publication type:
- Article
Applying rewriting methods to special monoids.
- Published in:
- Mathematical Proceedings of the Cambridge Philosophical Society, 1992, v. 112, n. 3, p. 495, doi. 10.1017/S0305004100071176
- By:
- Publication type:
- Article
Introduction to the Special Issue of the 18th Annual International RECOMB Satellite Workshop on Comparative Genomics.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1142/S0219720021020030
- By:
- Publication type:
- Article
MOTIF DISCOVERY WITH DATA MINING IN 3D PROTEIN STRUCTURE DATABASES: DISCOVERY, VALIDATION AND PREDICTION OF THE U-SHAPE ZINC BINDING ("HUF-ZINC") MOTIF.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 1, p. -1, doi. 10.1142/S0219720013400088
- By:
- Publication type:
- Article
S-Cluster++: a fast program for solving the cluster containment problem for phylogenetic networks.
- Published in:
- Bioinformatics, 2018, v. 34, n. 17, p. i680, doi. 10.1093/bioinformatics/bty594
- By:
- Publication type:
- Article
A program for verification of phylogenetic network models.
- Published in:
- Bioinformatics, 2016, v. 32, n. 17, p. i503, doi. 10.1093/bioinformatics/btw467
- By:
- Publication type:
- Article
APPROXIMATING THE SPANNING k-TREE FOREST PROBLEM.
- Published in:
- International Journal of Foundations of Computer Science, 2012, v. 23, n. 7, p. 1543, doi. 10.1142/S0129054112500232
- By:
- Publication type:
- Article
COMPUTING AND COMBINATORICS CONFERENCE — COCOON'02.
- Published in:
- International Journal of Foundations of Computer Science, 2004, v. 15, n. 1, p. 1, doi. 10.1142/S0129054104002261
- By:
- Publication type:
- Article