Works by Loose, Matthew

Results: 23

Multiscale stochastic modelling of gene expression.

Published in:

Journal of Mathematical Biology, 2012, v. 65, n. 3, p. 493, doi. 10.1007/s00285-011-0468-7

By:

Bokes, Pavol;
King, John;
Wood, Andrew;
Loose, Matthew

Publication type:

Article

Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression.

Published in:

Journal of Mathematical Biology, 2012, v. 64, n. 5, p. 829, doi. 10.1007/s00285-011-0433-5

By:

Bokes, Pavol;
King, John;
Wood, Andrew;
Loose, Matthew

Publication type:

Article

Mathematical modelling of a microRNA-regulated gene network in Caenorhabditis elegans.

Published in:

Mathematical Biosciences & Engineering, 2020, v. 17, n. 4, p. 2881, doi. 10.3934/mbe.2020162

By:

Haque, Mainul;
King, John R.;
Preston, Simon;
Loose, Matthew;
Pomerai, David de

Publication type:

Article

Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02617-x

By:

Rodriguez-Algarra, Francisco;
Seaborne, Robert A. E.;
Danson, Amy F.;
Yildizoglu, Selin;
Yoshikawa, Harunori;
Law, Pui Pik;
Ahmad, Zakaryya;
Maudsley, Victoria A.;
Brew, Ama;
Holmes, Nadine;
Ochôa, Mateus;
Hodgkinson, Alan;
Marzi, Sarah J.;
Pradeepa, Madapura M.;
Loose, Matthew;
Holland, Michelle L.;
Rakyan, Vardhman K.

Publication type:

Article

The potential impact of nanopore sequencing on human genetics.

Published in:

Human Molecular Genetics, 2017, v. 26, p. R202, doi. 10.1093/hmg/ddx287

By:

Loose, Matthew W.

Publication type:

Article

Dissecting microbial communities and resistomes for interconnected humans, soil, and livestock.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2023, v. 17, n. 1, p. 21, doi. 10.1038/s41396-022-01315-7

By:

Maciel-Guerra, Alexandre;
Baker, Michelle;
Hu, Yue;
Wang, Wei;
Zhang, Xibin;
Rong, Jia;
Zhang, Yimin;
Zhang, Jing;
Kaler, Jasmeet;
Renney, David;
Loose, Matthew;
Emes, Richard D.;
Liu, Longhai;
Chen, Junshi;
Peng, Zixin;
Li, Fengqin;
Dottorini, Tania

Publication type:

Article

AlignWise: a tool for identifying protein-coding sequence and correcting frame-shifts.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0813-8

By:

Evans, Teri;
Loose, Matthew

Publication type:

Article

A bistable genetic switch which does not require high co-operativity at the promoter: a two-timescale model for the PU.1–GATA-1 interaction.

Published in:

Mathematical Medicine & Biology: A Journal of the IMA, 2009, v. 26, n. 2, p. 117, doi. 10.1093/imammb/dqn026

By:

Bokes, Pavol;
King, John R.;
Loose, Matthew

Publication type:

Article

Genome Profiling of SARS-CoV-2 in Indonesia, ASEAN and the Neighbouring East Asian Countries: Features, Challenges and Achievements.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 4, p. N.PAG, doi. 10.3390/v14040778

By:

Cahyani, Inswasti;
Putro, Eko W.;
Ridwanuloh, Asep M.;
Wibowo, Satrio;
Hariyatun, Hariyatun;
Syahputra, Gita;
Akbariani, Gilang;
Utomo, Ahmad R.;
Ilyas, Mohammad;
Loose, Matthew;
Kusharyoto, Wien;
Susanti, Susanti

Publication type:

Article

Genome Reference Assembly for Bottlenecked Southern Australian Koalas.

Published in:

Genome Biology & Evolution, 2023, v. 15, n. 1, p. 1, doi. 10.1093/gbe/evac176

By:

Blanchard, Adam Mark;
Emes, Richard David;
Greenwood, Alex David;
Holmes, Nadine;
Loose, Matthew William;
McEwen, Gail Katherine;
Meers, Joanne;
Speight, Natasha;
Tarlinton, Rachael Eugenie

Publication type:

Article

The Impact of Real-Time Whole-Genome Sequencing in Controlling Healthcare-Associated SARS-CoV-2 Outbreaks.

Published in:

Journal of Infectious Diseases, 2022, v. 225, n. 1, p. 10, doi. 10.1093/infdis/jiab483

By:

Francis, Rodric V;
Billam, Harriet;
Clarke, Mitch;
Yates, Carl;
Tsoleridis, Theocharis;
Berry, Louise;
Mahida, Nikunj;
Irving, William L;
Moore, Christopher;
Holmes, Nadine;
Ball, Jonathan K;
Loose, Matthew;
McClure, C Patrick;
consortium, COVID-19 Genomics UK (COG-UK);
COVID-19 Genomics UK (COG-UK) consortium

Publication type:

Article

Inference, Validation, and Dynamic Modeling of Transcription Networks in Multipotent Hematopoietic Cells.

Published in:

Annals of the New York Academy of Sciences, 2007, v. 1106, p. 30, doi. 10.1196/annals.1392.018

By:

SONEJI, SHAMIT;
HUANG, SUI;
LOOSE, MATTHEW;
DONALDSON, IAN JOHN;
PATIENT, ROGER;
GÖTTGENS, BERTHOLD;
ENVER, TARIQ;
MAY, GILLIAN

Publication type:

Article

NANOG is required to establish the competence for germ-layer differentiation in the basal tetrapod axolotl.

Published in:

PLoS Biology, 2023, v. 21, n. 6, p. 1, doi. 10.1371/journal.pbio.3002121

By:

Simpson, Luke A.;
Crowley, Darren;
Forey, Teri;
Acosta, Helena;
Ferjentsik, Zoltan;
Chatfield, Jodie;
Payne, Alexander;
Simpson, Benjamin S.;
Redwood, Catherine;
Dixon, James E.;
Holmes, Nadine;
Sang, Fei;
Alberio, Ramiro;
Loose, Matthew;
Johnson, Andrew D.

Publication type:

Article

Icarust, a real-time simulator for Oxford Nanopore adaptive sampling.

Published in:

Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae141

By:

Munro, Rory;
Wibowo, Satrio;
Payne, Alexander;
Loose, Matthew

Publication type:

Article

minoTour, real-time monitoring and analysis for nanopore sequencers.

Published in:

Bioinformatics, 2022, v. 38, n. 4, p. 1133, doi. 10.1093/bioinformatics/btab780

By:

Munro, Rory;
Santos, Roberto;
Payne, Alexander;
Forey, Teri;
Osei, Solomon;
Holmes, Nadine;
Loose, Matthew

Publication type:

Article

BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files.

Published in:

Bioinformatics, 2019, v. 35, n. 13, p. 2193, doi. 10.1093/bioinformatics/bty841

By:

Payne, Alexander;
Holmes, Nadine;
Rakyan, Vardhman;
Loose, Matthew

Publication type:

Article

Impact of whole-genome duplications on structural variant evolution in Cochlearia.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49679-y

By:

Hämälä, Tuomas;
Moore, Christopher;
Cowan, Laura;
Carlile, Matthew;
Gopaulchan, David;
Brandrud, Marie K.;
Birkeland, Siri;
Loose, Matthew;
Kolář, Filip;
Koch, Marcus A.;
Yant, Levi

Publication type:

Article

Transcriptional Bursting Diversifies the Behaviour of a Toggle Switch: Hybrid Simulation of Stochastic Gene Expression.

Published in:

Bulletin of Mathematical Biology, 2013, v. 75, n. 2, p. 351, doi. 10.1007/s11538-013-9811-z

By:

Bokes, Pavol;
King, John;
Wood, Andrew;
Loose, Matthew

Publication type:

Article

Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design.

Published in:

Nature Biotechnology, 2023, v. 41, n. 7, p. 1018, doi. 10.1038/s41587-022-01580-z

By:

Weilguny, Lukas;
De Maio, Nicola;
Munro, Rory;
Manser, Charlotte;
Birney, Ewan;
Loose, Matthew;
Goldman, Nick

Publication type:

Article

Readfish enables targeted nanopore sequencing of gigabase-sized genomes.

Published in:

Nature Biotechnology, 2021, v. 39, n. 4, p. 442, doi. 10.1038/s41587-020-00746-x

By:

Payne, Alexander;
Holmes, Nadine;
Clarke, Thomas;
Munro, Rory;
Debebe, Bisrat J.;
Loose, Matthew

Publication type:

Article

Reply to 'Errors in long-read assemblies can critically affect protein prediction'.

Published in:

2019

By:

Koren, Sergey;
Phillippy, Adam M.;
Simpson, Jared T.;
Loman, Nicholas J.;
Loose, Matthew

Publication type:

Letter

5-hydroxymethyl-cytosine enrichment of non-committed cells is not a universal feature of vertebrate development.

Published in:

Epigenetics, 2012, v. 7, n. 4, p. 383, doi. 10.4161/epi.19375

By:

Almeida, Rimple D.;
Loose, Matthew;
Sottile, Virginie;
Matsa, Elena;
Denning, Chris;
Young, Lorraine;
Johnson, Andrew D.;
Gering, Martin;
Ruzov, Alexey

Publication type:

Article

Semi-quantitative immunohistochemical detection of 5-hydroxymethyl-cytosine reveals conservation of its tissue distribution between amphibians and mammals.

Published in:

Epigenetics, 2012, v. 7, n. 2, p. 137, doi. 10.4161/epi.7.2.18949

By:

Almeida, Rimple D.;
Sottile, Virginie;
Loose, Matthew;
De Sousa, Paul A.;
Johnson, Andrew D.;
Ruzov, Alexey

Publication type:

Article