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ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.
Published in:
BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1274-4
By:
- Qian Qin;
- Shenglin Mei;
- Qiu Wu;
- Hanfei Sun;
- Lewyn Li;
- Len Taing;
- Sujun Chen;
- Fugen Li;
- Tao Liu;
- Chongzhi Zang;
- Han Xu;
- Yiwen Chen;
- Meyer, Clifford A.;
- Yong Zhang;
- Brown, Myles;
- Long, Henry W.;
- Liu, X. Shirley
Publication type:
Article
Regulation of the glucocorticoid receptor via a BET-dependent enhancer drives antiandrogen resistance in prostate cancer.
Published in:
eLife, 2017, p. 1, doi. 10.7554/eLife.27861
By:
- Shah, Neel;
- Ping Wang;
- Wongvipat, John;
- Karthaus, Wouter R.;
- Abida, Wassim;
- Armenia, Joshua;
- Rockowitz, Shira;
- Drier, Yotam;
- Bernstein, Bradley E.;
- Long, Henry W.;
- Freedman, Matthew L.;
- Arora, Vivek K.;
- Deyou Zheng;
- Sawyers, Charles L.
Publication type:
Article
p16<sup>INK4A</sup>-deficiency predicts response to combined HER2 and CDK4/6 inhibition in HER2+ breast cancer brain metastases.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29081-2
By:
- Ni, Jing;
- Kabraji, Sheheryar;
- Xie, Shaozhen;
- Wang, Yanzhi;
- Pan, Peichen;
- He, Xiaofang;
- Liu, Zongming;
- Leone, Jose Palbo;
- Long, Henry W.;
- Brown, Myles A.;
- Winer, Eric P.;
- Dillon, Deborah A. R.;
- Lin, Nancy U.;
- Zhao, Jean J.
Publication type:
Article
The Takeover Market in Europe: Control Structures and the Performance of Large Companies Compared.
Published in:
Review of Industrial Organization, 1991, v. 6, n. 1, p. 1, doi. 10.1007/BF00427997
By:
- De Long, Henry W.
Publication type:
Article
The androgen receptor cistrome is extensively reprogrammed in human prostate tumorigenesis.
Published in:
Nature Genetics, 2015, v. 47, n. 11, p. 1346, doi. 10.1038/ng.3419
By:
- Li, Fugen;
- Takeda, David Y;
- Cejas, Paloma;
- Shivdasani, Ramesh A;
- Hahn, William C;
- Brown, Myles;
- Loda, Massimo;
- Long, Henry W;
- Freedman, Matthew L;
- Pomerantz, Mark M;
- Lenci, Romina;
- Chonkar, Apurva;
- Chabot, Matthew;
- Cook, Jennifer;
- Kantoff, Philip W;
- Vazquez, Francisca;
- Bowden, Michaela;
- Lis, Rosina
Publication type:
Article
Atlas of prostate cancer heritability in European and African-American men pinpoints tissue-specific regulation.
Published in:
Nature Communications, 2016, v. 7, n. 4, p. 10979, doi. 10.1038/ncomms10979
By:
- Gusev, Alexander;
- Shi, Huwenbo;
- Kichaev, Gleb;
- Pomerantz, Mark;
- Li, Fugen;
- Long, Henry W.;
- Ingles, Sue A.;
- Kittles, Rick A.;
- Strom, Sara S.;
- Rybicki, Benjamin A.;
- Nemesure, Barbara;
- Isaacs, William B.;
- Zheng, Wei;
- Pettaway, Curtis A.;
- Yeboah, Edward D.;
- Tettey, Yao;
- Biritwum, Richard B.;
- Adjei, Andrew A.;
- Tay, Evelyn;
- Truelove, Ann
Publication type:
Article
Universal NicE-seq for high-resolution accessible chromatin profiling for formaldehyde-fixed and FFPE tissues.
Published in:
Clinical Epigenetics, 2020, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13148-020-00921-6
By:
- Chin, Hang Gyeong;
- Sun, Zhiyi;
- Vishnu, Udayakumar S.;
- Hao, Pengying;
- Cejas, Paloma;
- Spracklin, George;
- Estève, Pierre-Olivier;
- Xu, Shuang-yong;
- Long, Henry W.;
- Pradhan, Sriharsa
Publication type:
Article
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.
Published in:
BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2139-9
By:
- Cornwell, MacIntosh;
- Vangala, Mahesh;
- Taing, Len;
- Herbert, Zachary;
- Köster, Johannes;
- Li, Bo;
- Sun, Hanfei;
- Li, Taiwen;
- Zhang, Jian;
- Qiu, Xintao;
- Pun, Matthew;
- Jeselsohn, Rinath;
- Brown, Myles;
- Liu, X. Shirley;
- Long, Henry W.
Publication type:
Article
Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA.
Published in:
Nature Protocols, 2023, v. 18, n. 8, p. 2404, doi. 10.1038/s41596-023-00841-8
By:
- Yang, Lin;
- Wang, Jin;
- Altreuter, Jennifer;
- Jhaveri, Aashna;
- Wong, Cheryl J.;
- Song, Li;
- Fu, Jingxin;
- Taing, Len;
- Bodapati, Sudheshna;
- Sahu, Avinash;
- Tokheim, Collin;
- Zhang, Yi;
- Zeng, Zexian;
- Bai, Gali;
- Tang, Ming;
- Qiu, Xintao;
- Long, Henry W.;
- Michor, Franziska;
- Liu, Yang;
- Liu, X. Shirley
Publication type:
Article
FiTAc-seq: fixed-tissue ChIP-seq for H3K27ac profiling and super-enhancer analysis of FFPE tissues.
Published in:
Nature Protocols, 2020, v. 15, n. 8, p. 2503, doi. 10.1038/s41596-020-0340-6
By:
- Font-Tello, Alba;
- Kesten, Nikolas;
- Xie, Yingtian;
- Taing, Len;
- Varešlija, Damir;
- Young, Leonie S.;
- Hamid, Anis A.;
- Van Allen, Eliezer M.;
- Sweeney, Christopher J.;
- Gjini, Evisa;
- Lako, Ana;
- Hodi, F. Steven;
- Bellmunt, Joaquim;
- Brown, Myles;
- Cejas, Paloma;
- Long, Henry W.
Publication type:
Article
CistromeFinder for ChIP-seq and DNase-seq data reuse.
Published in:
Bioinformatics, 2013, v. 29, n. 10, p. 1352, doi. 10.1093/bioinformatics/btt135
By:
- Sun, Hanfei;
- Qin, Bo;
- Liu, Tao;
- Wang, Qixuan;
- Liu, Jing;
- Wang, Juan;
- Lin, Xueqiu;
- Yang, Yulin;
- Taing, Len;
- Rao, Prakash K.;
- Brown, Myles;
- Zhang, Yong;
- Long, Henry W.;
- Liu, X. Shirley
Publication type:
Article
Chromatin accessibility promotes hematopoietic and leukemia stem cell activity.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15221-z
By:
- Cabal-Hierro, Lucia;
- van Galen, Peter;
- Prado, Miguel A.;
- Higby, Kelly J.;
- Togami, Katsuhiro;
- Mowery, Cody T.;
- Paulo, Joao A.;
- Xie, Yingtian;
- Cejas, Paloma;
- Furusawa, Takashi;
- Bustin, Michael;
- Long, Henry W.;
- Sykes, David B.;
- Gygi, Steven P.;
- Finley, Daniel;
- Bernstein, Bradley E.;
- Lane, Andrew A.
Publication type:
Article

Found: 12