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Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA.
- Published in:
- Nature Protocols, 2023, v. 18, n. 8, p. 2404, doi. 10.1038/s41596-023-00841-8
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- Publication type:
- Article
Non-muscle-invasive micropapillary bladder cancer has a distinct lncRNA profile associated with unfavorable prognosis.
- Published in:
- 2022
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- Publication type:
- journal article
Androgen receptor reprogramming demarcates prognostic, context-dependent gene sets in primary and metastatic prostate cancer.
- Published in:
- Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01278-8
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- Publication type:
- Article
p16<sup>INK4A</sup>-deficiency predicts response to combined HER2 and CDK4/6 inhibition in HER2+ breast cancer brain metastases.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29081-2
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- Publication type:
- Article
Transcriptomic analysis of micropapillary high grade T1 urothelial bladder cancer.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-76904-7
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- Publication type:
- Article
Universal NicE-seq for high-resolution accessible chromatin profiling for formaldehyde-fixed and FFPE tissues.
- Published in:
- Clinical Epigenetics, 2020, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13148-020-00921-6
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- Publication type:
- Article
Integrative analyses of single-cell transcriptome and regulome using MAESTRO.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02116-x
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- Publication type:
- Article
FiTAc-seq: fixed-tissue ChIP-seq for H3K27ac profiling and super-enhancer analysis of FFPE tissues.
- Published in:
- Nature Protocols, 2020, v. 15, n. 8, p. 2503, doi. 10.1038/s41596-020-0340-6
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- Publication type:
- Article
Chromatin accessibility promotes hematopoietic and leukemia stem cell activity.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15221-z
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- Publication type:
- Article
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2139-9
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- Publication type:
- Article
Regulation of the glucocorticoid receptor via a BET-dependent enhancer drives antiandrogen resistance in prostate cancer.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.27861
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- Publication type:
- Article
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1274-4
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- Publication type:
- Article
Atlas of prostate cancer heritability in European and African-American men pinpoints tissue-specific regulation.
- Published in:
- Nature Communications, 2016, v. 7, n. 4, p. 10979, doi. 10.1038/ncomms10979
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- Publication type:
- Article
Parametric techno-economic studies of coal/biomass co-gasification for IGCC plants with carbon capture using various coal ranks, fuel-feeding schemes, and syngas cooling methods.
- Published in:
- International Journal of Energy Research, 2016, v. 40, n. 4, p. 473, doi. 10.1002/er.3452
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- Publication type:
- Article
The androgen receptor cistrome is extensively reprogrammed in human prostate tumorigenesis.
- Published in:
- Nature Genetics, 2015, v. 47, n. 11, p. 1346, doi. 10.1038/ng.3419
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- Publication type:
- Article
Techno-economic analysis of biomass/coal Co-gasification IGCC systems with supercritical steam bottom cycle and carbon capture.
- Published in:
- International Journal of Energy Research, 2014, v. 38, n. 13, p. 1667, doi. 10.1002/er.3177
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- Publication type:
- Article
Broadly permissive intestinal chromatin underlies lateral inhibition and cell plasticity.
- Published in:
- Nature, 2014, v. 506, n. 7489, p. 511, doi. 10.1038/nature12903
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- Publication type:
- Article
A system performance and economics analysis of IGCC with supercritical steam bottom cycle supplied with varying blends of coal and biomass feedstock.
- Published in:
- International Journal of Energy Research, 2014, v. 38, n. 2, p. 189, doi. 10.1002/er.3022
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- Publication type:
- Article
Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification.
- Published in:
- Nature Methods, 2014, v. 11, n. 1, p. 73, doi. 10.1038/nmeth.2762
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- Publication type:
- Article
CistromeFinder for ChIP-seq and DNase-seq data reuse.
- Published in:
- Bioinformatics, 2013, v. 29, n. 10, p. 1352, doi. 10.1093/bioinformatics/btt135
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- Publication type:
- Article
A closer look into DNase I hypersensitivity.
- Published in:
- 2013
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- Publication type:
- Conference Paper
CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human.
- Published in:
- Bioinformatics, 2012, v. 28, n. 10, p. 1411, doi. 10.1093/bioinformatics/bts157
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- Publication type:
- Article
Book reviews.
- Published in:
- 1993
- By:
- Publication type:
- Book Review
The Takeover Market in Europe: Control Structures and the Performance of Large Companies Compared.
- Published in:
- Review of Industrial Organization, 1991, v. 6, n. 1, p. 1, doi. 10.1007/BF00427997
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- Publication type:
- Article
CRYSTAL GROWING AS A HOBBY.
- Published in:
- School Science & Mathematics, 1932, v. 32, n. 9, p. 1006, doi. 10.1111/j.1949-8594.1932.tb12756.x
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- Publication type:
- Article