Works by Liu, Zhongchi

Results: 81

Multi-Scale Spatial–Spectral Residual Attention Network for Hyperspectral Image Classification.

Published in:

Electronics (2079-9292), 2024, v. 13, n. 2, p. 262, doi. 10.3390/electronics13020262

By:

Wu, Qinggang;
He, Mengkun;
Liu, Zhongchi;
Liu, Yanyan

Publication type:

Article

Molecular basis of fruit development.

Published in:

Frontiers in Plant Science, 2015, v. 6, p. 1, doi. 10.3389/fpls.2015.00028

By:

Zhongchi Liu;
Franks, Robert G.

Publication type:

Article

A Model for an Early Role of Auxin in Arabidopsis Gynoecium Morphogenesis.

Published in:

Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00327

By:

Hawkins, Charles;
Zhongchi Liu

Publication type:

Article

Auxin biosynthesis gene FveYUC4 is critical for leaf and flower morphogenesis in woodland strawberry.

Published in:

Plant Journal, 2023, v. 115, n. 5, p. 1428, doi. 10.1111/tpj.16333

By:

Lu, Rui;
Pi, Mengting;
Liu, Zhongchi;
Kang, Chunying

Publication type:

Article

Natural variations in the PbCPK28 promoter regulate sugar content through interaction with PbTST4 and PbVHA‐A1 in pear.

Published in:

Plant Journal, 2023, v. 114, n. 1, p. 124, doi. 10.1111/tpj.16126

By:

Li, Jiaming;
Zhu, Rongxiang;
Zhang, Mingyue;
Cao, Beibei;
Li, Xiaolong;
Song, Bobo;
Liu, Zhongchi;
Wu, Jun

Publication type:

Article

Comparative transcriptomic analysis of apple and peach fruits: insights into fruit type specification.

Published in:

Plant Journal, 2022, v. 109, n. 6, p. 1614, doi. 10.1111/tpj.15633

By:

Li, Muzi;
Galimba, Kelsey;
Xiao, Yuwei;
Dardick, Chris;
Mount, Stephen M.;
Callahan, Ann;
Liu, Zhongchi

Publication type:

Article

Global identification of alternative splicing via comparative analysis of SMRT- and Illumina-based RNA-seq in strawberry.

Published in:

Plant Journal, 2017, v. 90, n. 1, p. 164, doi. 10.1111/tpj.13462

By:

Li, Yongping;
Dai, Cheng;
Hu, Chungen;
Liu, Zhongchi;
Kang, Chunying

Publication type:

Article

PIN2-mediated self-organizing transient auxin flow contributes to auxin maxima at the tip of Arabidopsis cotyledons.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-024-55480-8

By:

Pérez-Henríquez, Patricio;
Nagawa, Shingo;
Liu, Zhongchi;
Pan, Xue;
Michniewicz, Marta;
Tang, Wenxin;
Rasmussen, Carolyn;
Cui, Xinping;
Van Norman, Jaimie;
Strader, Lucia;
Yang, Zhenbiao

Publication type:

Article

A GT‐1 and PKc domain‐containing transcription regulator SIMPLE LEAF1 controls compound leaf development in woodland strawberry.

Published in:

New Phytologist, 2023, v. 237, n. 4, p. 1391, doi. 10.1111/nph.18589

By:

Pi, Mengting;
Zhong, Ruhan;
Hu, Shaoqiang;
Cai, Zhuoying;
Plunkert, Madison;
Zhang, Weiyi;
Liu, Zhongchi;
Kang, Chunying

Publication type:

Article

Conserved and novel roles of miR164‐CUC2 regulatory module in specifying leaf and floral organ morphology in strawberry.

Published in:

New Phytologist, 2019, v. 224, n. 1, p. 480, doi. 10.1111/nph.15982

By:

Zheng, Guanghui;
Wei, Wei;
Li, Yongping;
Kan, Lijun;
Wang, Fuxi;
Zhang, Xi;
Li, Feng;
Liu, Zhongchi;
Kang, Chunying

Publication type:

Article

An Atlas of Genomic Resources for Studying Rosaceae Fruits and Ornamentals.

Published in:

Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2021.644881

By:

Li, Muzi;
Xiao, Yuwei;
Mount, Steve;
Liu, Zhongchi

Publication type:

Article

Recessive Antimorphic Alleles Overcome Functionally Redundant Loci to Reveal TSO1 Function in Arabidopsis Flowers and Meristems.

Published in:

PLoS Genetics, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.pgen.1002352

By:

Sijacic, Paja;
Wanpeng Wang;
Zhongchi Liu

Publication type:

Article

FvbHLH9 Functions as a Positive Regulator of Anthocyanin Biosynthesis by Forming a HY5–bHLH9 Transcription Complex in Strawberry Fruits.

Published in:

Plant & Cell Physiology, 2020, v. 61, n. 4, p. 826, doi. 10.1093/pcp/pcaa010

By:

Li, Yang;
Xu, Pengbo;
Chen, Guanqun;
Wu, Jun;
Liu, Zhongchi;
Lian, Hongli

Publication type:

Article

Gene Expression Profiling of the Shoot Meristematic Tissues in Woodland Strawberry Fragaria vesca.

Published in:

Frontiers in Plant Science, 2019, v. 10, p. 1, doi. 10.3389/fpls.2019.01624

By:

Li, Yongping;
Feng, Jia;
Cheng, Laichao;
Dai, Cheng;
Gao, Qi;
Liu, Zhongchi;
Kang, Chunying

Publication type:

Article

Two MYB activators of anthocyanin biosynthesis exhibit specialized activities in petiole and fruit of diploid strawberry.

Published in:

Journal of Experimental Botany, 2023, v. 74, n. 5, p. 1517, doi. 10.1093/jxb/erac507

By:

Luo, Xi;
Plunkert, Madison;
Teng, Zi;
Mackenzie, Kathryn;
Guo, Lei;
Luo, Yaguang;
Hytönen, Timo;
Liu, Zhongchi

Publication type:

Article

Reporter gene expression reveals precise auxin synthesis sites during fruit and root development in wild strawberry.

Published in:

Journal of Experimental Botany, 2019, v. 70, n. 2, p. 563, doi. 10.1093/jxb/ery384

By:

Feng, Jia;
Dai, Cheng;
Luo, Huifeng;
Han, Yafan;
Liu, Zhongchi;
Kang, Chunying

Publication type:

Article

Reduced Anthocyanins in Petioles codes for a GST nthocyanin transporter that is essential for the foliage and ruit coloration in strawberry.

Published in:

Journal of Experimental Botany, 2018, v. 69, n. 10, p. 2595, doi. 10.1093/jxb/ery096

By:

Huifeng Luo;
Cheng Dai;
Yongping Li;
Jia Feng;
Zhongchi Liu;
Chunying Kang

Publication type:

Article

The making of virgin fruit: the molecular and genetic basis of parthenocarpy.

Published in:

Journal of Experimental Botany, 2018, v. 69, n. 5, p. 955, doi. 10.1093/jxb/erx446

By:

Joldersma, Dirk;
Zhongchi Liu

Publication type:

Article

Phylogenetic tree-informed microRNAome analysis uncovers conserved and lineage-specific miRNAs in Camellia during floral organ development.

Published in:

Journal of Experimental Botany, 2016, v. 67, n. 9, p. 2641, doi. 10.1093/jxb/erw095

By:

Jiangying Wang;
Weixin Liu;
Zhen Ying;
Liping Liu;
Hengfu Yin;
Zhengqi Fan;
Xinlei Li;
Bin Wu;
Jiyuan Li;
Zhongchi Liu

Publication type:

Article

A MFS-like plasma membrane transporter required for Leishmania virulence protects the parasites from iron toxicity.

Published in:

PLoS Pathogens, 2018, v. 14, n. 6, p. 1, doi. 10.1371/journal.ppat.1007140

By:

Laranjeira-Silva, Maria Fernanda;
Wang, Wanpeng;
Samuel, Tamika K.;
Maeda, Fernando Y.;
Michailowsky, Vladimir;
Hamza, Iqbal;
Liu, Zhongchi;
Andrews, Norma W.

Publication type:

Article

SEUSS and LEUNIG regulate cell proliferation, vascular development and organ polarity in Arabidopsis petals.

Published in:

Planta: An International Journal of Plant Biology, 2006, v. 224, n. 4, p. 801, doi. 10.1007/s00425-006-0264-6

By:

Franks, Robert G.;
Liu, Zhongchi;
Fischer, Robert L.

Publication type:

Article

A native visual screening reporter-assisted CRISPR/Cas9 system for high-efficient genome editing in strawberry.

Published in:

Molecular Horticulture, 2025, v. 5, n. 1, p. 1, doi. 10.1186/s43897-025-00151-5

By:

Han, Xianyan;
Liang, Xia;
Li, Dongdong;
Song, Miaoying;
Ma, Zhimin;
Li, Ruixia;
Meng, Han;
Cai, Yue;
Song, Bailong;
Liu, Zhongchi;
Zhou, Houcheng;
Zhou, Junhui

Publication type:

Article

The AP2 transcription factor BARE RECEPTACLE regulates floral organogenesis via auxin pathways in woodland strawberry.

Published in:

Plant Cell, 2024, v. 36, n. 12, p. 4970, doi. 10.1093/plcell/koae270

By:

Lu, Rui;
Hu, Shaoqiang;
Feng, Jia;
Liu, Zhongchi;
Kang, Chunying

Publication type:

Article

Transcription factor FveMYB117a inhibits axillary bud outgrowth by regulating cytokinin homeostasis in woodland strawberry.

Published in:

Plant Cell, 2024, v. 36, n. 6, p. 2427, doi. 10.1093/plcell/koae097

By:

Han, Yafan;
Qu, Minghao;
Liu, Zhongchi;
Kang, Chunying

Publication type:

Article

Allelic Variation of MYB10 Is the Major Force Controlling Natural Variation in Skin and Flesh Color in Strawberry (Fragaria spp.) Fruit.

Published in:

Plant Cell, 2020, v. 32, n. 12, p. 3723, doi. 10.1105/tpc.20.00474

By:

Castillejo, Cristina;
Waurich, Veronika;
Wagner, Henning;
Ramos, Rubén;
Oiza, Nicolás;
Muñoz, Pilar;
Triviño, Juan C.;
Caruana, Julie;
Liu, Zhongchi;
Cobo, Nicolás;
Hardigan, Michael A.;
Knapp, Steven J.;
Vallarino, José G.;
Osorio, Sonia;
Martín-Pizarro, Carmen;
Posé, David;
Toivainen, Tuomas;
Hytönen, Timo;
Oh, Youngjae;
Barbey, Christopher R.

Publication type:

Article

Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca.

Published in:

Plant Cell, 2013, v. 25, n. 6, p. 1960, doi. 10.1105/tpc.113.111732

By:

Kang, Chunying;
Darwish, Omar;
Geretz, Aviva;
Shahan, Rachel;
Alkharouf, Nadim;
Liu, Zhongchi

Publication type:

Article

MicroRNA Superfamilies Descended from miR390 and Their Roles in Secondary Small Interfering RNA Biogenesis in Eudicots.

Published in:

Plant Cell, 2013, v. 25, n. 5, p. 1555, doi. 10.1105/tpc.113.110957

By:

Xia, Rui;
Meyers, Blake C.;
Liu, Zhongchi;
Beers, Eric P.;
Ye, Songqing;
Liu, Zongrang

Publication type:

Article

Editorial: Rosaceae Fruit Development and Quality.

Published in:

Frontiers in Plant Science, 2022, v. 12, p. 1, doi. 10.3389/fpls.2021.837300

By:

Kang, Chunying;
Yao, Jia-Long;
Liu, Zhongchi;
Han, Yuepeng

Publication type:

Article

Chromosome-Scale Genome for a Red-Fruited, Perpetual Flowering and Runnerless Woodland Strawberry (Fragaria vesca).

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.671371

By:

Alger, Elizabeth I.;
Platts, Adrian E.;
Deb, Sontosh K.;
Luo, Xi;
Ou, Shujun;
Cao, Yao;
Hummer, Kim E.;
Xiong, Zhiyong;
Knapp, Steven J.;
Liu, Zhongchi;
McKain, Michael R.;
Edger, Patrick P.

Publication type:

Article

Mechanism of fertilization-induced auxin synthesis in the endosperm for seed and fruit development.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31656-y

By:

Guo, Lei;
Luo, Xi;
Li, Muzi;
Joldersma, Dirk;
Plunkert, Madison;
Liu, Zhongchi

Publication type:

Article

Distinct double flower varieties in Camellia japonica exhibit both expansion and contraction of C-class gene expression.

Published in:

BMC Plant Biology, 2014, v. 14, n. 1, p. 2, doi. 10.1186/s12870-014-0288-1

By:

Yingkun Sun;
Zhengqi Fan;
Xinlei Li;
Zhongchi Liu;
Jiyuan Li;
Hengfu Yin

Publication type:

Article

SGR: an online genomic resource for the woodland strawberry.

Published in:

BMC Plant Biology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2229-13-223

By:

Darwish, Omar;
Slovin, Janet P.;
Kang, Chunying;
Hollender, Courtney A.;
Geretz, Aviva;
Houston, Sam;
Zhongchi Liu;
Alkharouf, Nadim W.

Publication type:

Article

Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2014-2

By:

Chunying Kang;
Zhongchi Liu

Publication type:

Article

Re-annotation of the woodland strawberry (Fragaria vesca) genome.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1221-1

By:

Darwish, Omar;
Shahan, Rachel;
Zhongchi Liu;
Slovin, Janet P.;
Alkharouf, Nadim W.

Publication type:

Article

Re-annotation of the woodland strawberry (Fragaria vesca) genome.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 701, doi. 10.1186/s12864-015-1221-1

By:

Darwish, Omar;
Shahan, Rachel;
Zhongchi Liu;
Slovin, Janet P.;
Alkharouf, Nadim W.

Publication type:

Article

Identification and analysis of imprinted genes in wild strawberry uncover a regulatory pathway in endosperm development.

Published in:

Plant Physiology, 2024, v. 196, n. 4, p. 2599, doi. 10.1093/plphys/kiae496

By:

Joldersma, Dirk;
Guo, Lei;
Alger, Elizabeth I;
Ippoliti, Christina;
Luo, Xi;
Platts, Adrian E;
Edger, Patrick P;
Liu, Zhongchi

Publication type:

Article

Comparison of red raspberry and wild strawberry fruits reveals mechanisms of fruit type specification.

Published in:

Plant Physiology, 2023, v. 193, n. 2, p. 1016, doi. 10.1093/plphys/kiad409

By:

Junhui Zhou;
Muzi Li;
Yongping Li;
Yuwei Xiao;
Xi Luo;
Shenglan Gao;
Zhimin Ma;
Sadowski, Norah;
Timp, Winston;
Dardick, Chris;
Callahan, Ann;
Mount, Stephen M.;
Zhongchi Liu

Publication type:

Article

Molecular bases of strawberry fruit quality traits: Advances, challenges, and opportunities.

Published in:

Plant Physiology, 2023, v. 193, n. 2, p. 900, doi. 10.1093/plphys/kiad376

By:

Zhongchi Liu;
Tong Liang;
Chunying Kang

Publication type:

Article

Roles and evolution of four LEAFY homologs in floral patterning and leaf development in woodland strawberry.

Published in:

Plant Physiology, 2023, v. 192, n. 1, p. 240, doi. 10.1093/plphys/kiad067

By:

Yunming Zhang;
Lijun Kan;
Shaoqiang Hu;
Zhongchi Liu;
Chunying Kang

Publication type:

Article

Factor of DNA methylation 1 affects woodland strawberry plant stature and organ size via DNA methylation.

Published in:

Plant Physiology, 2023, v. 191, n. 1, p. 335, doi. 10.1093/plphys/kiac462

By:

Guanghui Zheng;
Shaoqiang Hu;
Simin Cheng;
Liyang Wang;
Lijun Kan;
Zhengming Wang;
Qiang Xu;
Zhongchi Liu;
Chunying Kang

Publication type:

Article

Woodland strawberry axillary bud fate is dictated by a crosstalk of environmental and endogenous factors.

Published in:

Plant Physiology, 2021, v. 187, n. 3, p. 1221, doi. 10.1093/plphys/kiab421

By:

Andrés, Javier;
Caruana, Julie;
Jiahui Liang;
Samad, Samia;
Monfort, Amparo;
Zhongchi Liu;
Hytönen, Timo;
Koskela, Elli A.

Publication type:

Article

GRAS transcription factor LOSS OF AXILLARY MERISTEMS is essential for stamen and runner formation in wild strawberry.

Published in:

Plant Physiology, 2021, v. 186, n. 4, p. 1970, doi. 10.1093/plphys/kiab184

By:

Jia Feng;
Laichao Cheng;
Zhenying Zhu;
Feiqi Yu;
Cheng Dai;
Zhongchi Liu;
Wen-Wu Guo;
Xiao-Meng Wu;
Chunying Kang

Publication type:

Article

Bacterial diketopiperazines stimulate diatom growth and lipid accumulation.

Published in:

Plant Physiology, 2021, v. 186, n. 2, p. 1159, doi. 10.1093/plphys/kiab080

By:

Sittmann, John;
Bae, Munhyung;
Mevers, Emily;
Muzi Li;
Quinn, Andrew;
Sriram, Ganesh;
Clardy, Jon;
Zhongchi Liu

Publication type:

Article

Gibberellin and auxin signaling genes RGA1 and ARF8 repress accessory fruit initiation in diploid strawberry.

Published in:

Plant Physiology, 2021, v. 185, n. 3, p. 1059, doi. 10.1093/plphys/kiaa087

By:

Junhui Zhou;
Sittmann, John;
Lei Guo;
Yuwei Xiao;
Xiaolong Huang;
Pulapaka, Anuhya;
Zhongchi Liu

Publication type:

Article

Allelic Variation of MYB10 Is the Major Force Controlling Natural Variation in Skin and Flesh Color in Strawberry (Fragaria spp.) Fruit.

Published in:

Plant Physiology, 2020, v. 184, n. 4, p. 3723, doi. 10.1105/tpc.20.00474

By:

Castillejo, Cristina;
Waurich, Veronika;
Wagner, Henning;
Ramos, Rubén;
Oiza, Nicolás;
Muñoz, Pilar;
Triviño, Juan C.;
Caruana, Julie;
Zhongchi Liu;
Cobo, Nicolás;
Hardigan, Michael A.;
Knapp, Steven J.;
Vallarino, José G.;
Osorio, Sonia;
Martín-Pizarro, Carmen;
Poséb,, David;
Toivainen, Tuomas;
Hytönen, Timo;
Youngjae Oh;
Barbey, Christopher R.

Publication type:

Article

Consensus Coexpression Network Analysis Identifies Key Regulators of Flower and Fruit Development in Wild Strawberry.

Published in:

Plant Physiology, 2018, v. 178, n. 1, p. 202, doi. 10.1104/pp.18.00086

By:

Shahan, Rachel;
Zawora, Christopher;
Wight, Haley;
Sittmann, John;
Wang, Wanpeng;
Mount, Stephen M.;
Zhongchi Liu

Publication type:

Article

SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.

Published in:

Plant Physiology, 2016, v. 170, n. 3, p. 1675, doi. 10.1104/pp.15.01501

By:

Xue Gong;
Flores-Vergara, Miguel A.;
Jing Han Hong;
Huangwei Chu;
Jun Lim;
Franks, Robert G.;
Zhongchi Liu;
Jian Xu

Publication type:

Article

Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry.

Published in:

Plant Physiology, 2015, v. 169, n. 1, p. 594, doi. 10.1104/pp.15.00253

By:

Rui Xia;
Songqing Ye;
Zongrang Liu;
Blake C. Meyers;
Zhongchi Liu

Publication type:

Article

Floral Transcriptomes in Woodland Strawberry Uncover Developing Receptacle and Anther Gene Networks.

Published in:

Plant Physiology, 2014, v. 165, n. 3, p. 1062, doi. 10.1104/pp.114.237529

By:

Hollender, Courtney A.;
Chunying Kang;
Darwish, Omar;
Geretz, Aviva;
Matthews, Benjamin F.;
Slovin, Janet;
Alkharouf, Nadim;
Zhongchi Liu

Publication type:

Article

Simple allele-discriminating PCR for cost-effective and rapid genotyping and mapping.

Published in:

Plant Methods, 2009, v. 5, p. 1, doi. 10.1186/1746-4811-5-1

By:

Minh Bui;
Zhongchi Liu

Publication type:

Article