Works by Liu, Wen-Tso

Results: 52

East Tibetan Lakes Harbour Novel Clusters of Picocyanobacteria as Inferred from the 16S–23S rRNA Internal Transcribed Spacer Sequences.

Published in:

Microbial Ecology, 2010, v. 59, n. 3, p. 614, doi. 10.1007/s00248-009-9603-z

By:

Wu, Qinglong L.;
Xing, Peng;
Liu, Wen-Tso

Publication type:

Article

Impact of salinity origin on microbial communities in saline springs within the Illinois Basin, USA.

Published in:

Environmental Microbiology, 2022, v. 24, n. 12, p. 6112, doi. 10.1111/1462-2920.16241

By:

Zhao, Linduo;
Shao, Hongbo;
Zhang, Li;
Panno, Samuel V.;
Kelly, Walton R.;
Lin, Tzu‐Yu;
Liu, Wen‐Tso;
Flynn, Theodore M.;
Berger, Peter

Publication type:

Article

Novel energy conservation strategies and behaviour of Pelotomaculum schinkii driving syntrophic propionate catabolism.

Published in:

Environmental Microbiology, 2018, v. 20, n. 12, p. 4503, doi. 10.1111/1462-2920.14388

By:

Hidalgo‐Ahumada, Catalina A. P.;
Nobu, Masaru K.;
Narihiro, Takashi;
Tamaki, Hideyuki;
Liu, Wen‐Tso;
Kamagata, Yoichi;
Stams, Alfons J M;
Imachi, Hiroyuki;
Sousa, Diana Z

Publication type:

Article

Disentangling the syntrophic electron transfer mechanisms of Candidatus geobacter eutrophica through electrochemical stimulation and machine learning.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-94628-0

By:

Yuan, Heyang;
Wang, Xuehao;
Lin, Tzu-Yu;
Kim, Jinha;
Liu, Wen-Tso

Publication type:

Article

Microbial Community Analysis of Anaerobic Reactors Treating Soft Drink Wastewater.

Published in:

PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0119131

By:

Narihiro, Takashi;
Kim, Na-Kyung;
Mei, Ran;
Nobu, Masaru K.;
Liu, Wen-Tso

Publication type:

Article

Analysis of 16S rRNA Amplicon Sequencing Options on the Roche/454 Next-Generation Titanium Sequencing Platform.

Published in:

PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0025263

By:

Tamaki, Hideyuki;
Wright, Chris L.;
Xiangzhen Li;
Zhaohua Peng;
Qiaoyan Lin;
Chiachi Hwang;
Shiping Wang;
Thimmapuram, Jyothi;
Kamagata, Yoichi;
Liu, Wen-Tso

Publication type:

Article

Relative Importance of Stochastic Assembly Process of Membrane Biofilm Increased as Biofilm Aged.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.708531

By:

Matar, Gerald K.;
Ali, Muhammad;
Bagchi, Samik;
Nunes, Suzana;
Liu, Wen-Tso;
Saikaly, Pascal E.

Publication type:

Article

Ecogenomics-Based Mass Balance Model Reveals the Effects of Fermentation Conditions on Microbial Activity.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.595036

By:

Kim, Jinha;
Mei, Ran;
Wilson, Fernanda P.;
Yuan, Heyang;
Bocher, Benjamin T. W.;
Liu, Wen-Tso

Publication type:

Article

Metagenomic and Metatranscriptomic Analyses Revealed Uncultured Bacteroidales Populations as the Dominant Proteolytic Amino Acid Degraders in Anaerobic Digesters.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.593006

By:

Mei, Ran;
Nobu, Masaru K.;
Narihiro, Takashi;
Liu, Wen-Tso

Publication type:

Article

Thermodynamically diverse syntrophic aromatic compound catabolism.

Published in:

Environmental Microbiology, 2017, v. 19, n. 11, p. 4576, doi. 10.1111/1462-2920.13922

By:

Nobu, Masaru Konishi;
Narihiro, Takashi;
Liu, Miaomiao;
Kuroda, Kyohei;
Mei, Ran;
Liu, Wen ‐ Tso

Publication type:

Article

Impact of drinking water treatment and distribution on the microbiome continuum: an ecological disturbance's perspective.

Published in:

Environmental Microbiology, 2017, v. 19, n. 8, p. 3163, doi. 10.1111/1462-2920.13800

By:

Zhang, Ya;
Oh, Seungdae;
Liu, Wen ‐ Tso

Publication type:

Article

The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow.

Published in:

Environmental Microbiology, 2015, v. 17, n. 12, p. 4861, doi. 10.1111/1462-2920.12444

By:

Nobu, Masaru K.;
Narihiro, Takashi;
Hideyuki, Tamaki;
Qiu, Yan ‐ Ling;
Sekiguchi, Yuji;
Woyke, Tanja;
Goodwin, Lynne;
Davenport, Karen W.;
Kamagata, Yoichi;
Liu, Wen ‐ Tso

Publication type:

Article

The nexus of syntrophy-associated microbiota in anaerobic digestion revealed by long-term enrichment and community survey.

Published in:

Environmental Microbiology, 2015, v. 17, n. 5, p. 1707, doi. 10.1111/1462-2920.12616

By:

Narihiro, Takashi;
Nobu, Masaru K.;
Kim, Na ‐ Kyung;
Kamagata, Yoichi;
Liu, Wen ‐ Tso

Publication type:

Article

Metagenomic characterization of ' C andidatus Defluviicoccus tetraformis strain TFO71', a tetrad-forming organism, predominant in an anaerobic-aerobic membrane bioreactor with deteriorated biological phosphorus removal.

Published in:

Environmental Microbiology, 2014, v. 16, n. 9, p. 2739, doi. 10.1111/1462-2920.12383

By:

Nobu, Masaru K.;
Tamaki, Hideyuki;
Kubota, Kengo;
Liu, Wen ‐ Tso

Publication type:

Article

H alomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir.

Published in:

Environmental Microbiology, 2014, v. 16, n. 6, p. 1695, doi. 10.1111/1462-2920.12325

By:

Dong, Yiran;
Kumar, Charu Gupta;
Chia, Nicholas;
Kim, Pan‐Jun;
Miller, Philip A.;
Price, Nathan D.;
Cann, Isaac K. O.;
Flynn, Theodore M.;
Sanford, Robert A.;
Krapac, Ivan G.;
Locke, Randall A.;
Hong, Pei‐Ying;
Tamaki, Hideyuki;
Liu, Wen‐Tso;
Mackie, Roderick I.;
Hernandez, Alvaro G.;
Wright, Chris L.;
Mikel, Mark A.;
Walker, Jared L.;
Sivaguru, Mayandi

Publication type:

Article

Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate.

Published in:

Environmental Microbiology, 2012, v. 14, n. 2, p. 441, doi. 10.1111/j.1462-2920.2011.02630.x

By:

Tamaki, Hideyuki;
Zhang, Rui;
Angly, Florent E.;
Nakamura, Shota;
Hong, Pei-Ying;
Yasunaga, Teruo;
Kamagata, Yoichi;
Liu, Wen-Tso

Publication type:

Article

Evaluating single-base-pair discriminating capability of planar oligonucleotide microchips using a non-equilibrium dissociation approach.

Published in:

Environmental Microbiology, 2004, v. 6, n. 11, p. 1197, doi. 10.1111/j.1462-2920.2004.00648.x

By:

Li, Emily Sze Ying;
Ng, Johnson Kian Kok;
Wu, Jer-Horng;
Liu, Wen-Tso

Publication type:

Article

Diversity and distribution of a deeply branched novel proteobacterial group found in anaerobic–aerobic activated sludge processes.

Published in:

Environmental Microbiology, 2002, v. 4, n. 11, p. 753, doi. 10.1046/j.1462-2920.2002.00357.x

By:

Kong, Yunhong;
Ong, Say Leong;
Ng, Wun Jun;
Liu, Wen-Tso

Publication type:

Article

Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach.

Published in:

Environmental Microbiology, 2001, v. 3, n. 10, p. 619, doi. 10.1046/j.1462-2920.2001.00233.x

By:

Liu, Wen-Tso;
Mirzabekov, Andrei D.;
Stahl, David A.

Publication type:

Article

Drinking water microbiome assembly induced by water stagnation.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 6, p. 1520, doi. 10.1038/s41396-018-0101-5

By:

Ling, Fangqiong;
Whitaker, Rachel;
LeChevallier, Mark W.;
Liu, Wen-Tso

Publication type:

Article

Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 1, p. 87, doi. 10.1038/ismej.2016.104

By:

Browne, Patrick;
Tamaki, Hideyuki;
Kyrpides, Nikos;
Woyke, Tanja;
Goodwin, Lynne;
Imachi, Hiroyuki;
Bräuer, Suzanna;
Yavitt, Joseph B;
Liu, Wen-Tso;
Zinder, Stephen;
Cadillo-Quiroz, Hinsby

Publication type:

Article

Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 10, p. 2478, doi. 10.1038/ismej.2016.33

By:

Nobu, Masaru Konishi;
Narihiro, Takashi;
Kuroda, Kyohei;
Mei, Ran;
Liu, Wen-Tso

Publication type:

Article

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 8, p. 2076, doi. 10.1038/ismej.2016.71

By:

Ye, Lin;
Amberg, Jon;
Chapman, Duane;
Gaikowski, Mark;
Liu, Wen-Tso

Publication type:

Article

Core-satellite populations and seasonality of water meter biofilms in a metropolitan drinking water distribution system.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 3, p. 582, doi. 10.1038/ismej.2015.136

By:

Ling, Fangqiong;
Hwang, Chiachi;
LeChevallier, Mark W;
Andersen, Gary L;
Liu, Wen-Tso

Publication type:

Article

Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 2, p. 273, doi. 10.1038/ismej.2015.97

By:

Nobu, Masaru K;
Dodsworth, Jeremy A;
Murugapiran, Senthil K;
Rinke, Christian;
Gies, Esther A;
Webster, Gordon;
Schwientek, Patrick;
Kille, Peter;
Parkes, R John;
Sass, Henrik;
Jørgensen, Bo B;
Weightman, Andrew J;
Liu, Wen-Tso;
Hallam, Steven J;
Tsiamis, George;
Woyke, Tanja;
Hedlund, Brian P

Publication type:

Article

Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 8, p. 1710, doi. 10.1038/ismej.2014.256

By:

Nobu, Masaru K;
Narihiro, Takashi;
Rinke, Christian;
Kamagata, Yoichi;
Tringe, Susannah G;
Woyke, Tanja;
Liu, Wen-Tso

Publication type:

Article

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 3, p. 541, doi. 10.1038/ismej.2013.181

By:

Ye, Lin;
Amberg, Jon;
Chapman, Duane;
Gaikowski, Mark;
Liu, Wen-Tso

Publication type:

Article

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 1, p. 122, doi. 10.1038/ismej.2010.125

By:

Lykidis, Athanasios;
Chen, Chia-Lung;
Tringe, Susannah G;
McHardy, Alice C;
Copeland, Alex;
Kyrpides, Nikos C;
Hugenholtz, Philip;
Macarie, Hervé;
Olmos, Alejandro;
Monroy, Oscar;
Liu, Wen-Tso

Publication type:

Article

Effect of divalent ions and a polyphosphate on composition, structure, and stiffness of simulated drinking water biofilms.

Published in:

NPJ Biofilms & Microbiomes, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41522-018-0058-1

By:

Shen, Yun;
Huang, Pin Chieh;
Huang, Conghui;
Sun, Peng;
Monroy, Guillermo L.;
Wu, Wenjing;
Lin, Jie;
Espinosa-Marzal, Rosa M.;
Boppart, Stephen A.;
Liu, Wen-Tso;
Nguyen, Thanh H.

Publication type:

Article

Ugly ducklings—the dark side of plastic materials in contact with potable water.

Published in:

NPJ Biofilms & Microbiomes, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41522-018-0050-9

By:

Neu, Lisa;
Bänziger, Carola;
Proctor, Caitlin R.;
Zhang, Ya;
Liu, Wen-Tso;
Hammes, Frederik

Publication type:

Article

Evaluating digestion efficiency in full-scale anaerobic digesters by identifying active microbial populations through the lens of microbial activity.

Published in:

Scientific Reports, 2016, p. 34090, doi. 10.1038/srep34090

By:

Mei, Ran;
Narihiro, Takashi;
Nobu, Masaru K.;
Kuroda, Kyohei;
Liu, Wen-Tso

Publication type:

Article

Nexus of Stochastic and Deterministic Processes on Microbial Community Assembly in Biological Systems.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01536

By:

Yuan, Heyang;
Mei, Ran;
Liao, Junhui;
Liu, Wen-Tso

Publication type:

Article

Immune-modulatory genomic properties differentiate gut microbiota of infants with and without eczema.

Published in:

PLoS ONE, 2017, v. 12, n. 10, p. 1, doi. 10.1371/journal.pone.0184955

By:

Oh, Seungdae;
Yap, Gaik Chin;
Hong, Pei-Ying;
Huang, Chiung-Hui;
Aw, Marion M.;
Shek, Lynette Pei-Chi;
Liu, Wen-Tso;
Lee, Bee Wah

Publication type:

Article

A Single-Granule-Level Approach Reveals Ecological Heterogeneity in an Upflow Anaerobic Sludge Blanket Reactor.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0167788

By:

Kuroda, Kyohei;
Nobu, Masaru K.;
Mei, Ran;
Narihiro, Takashi;
Bocher, Benjamin T. W.;
Yamaguchi, Takashi;
Liu, Wen-Tso

Publication type:

Article

The application of molecular tools to study the drinking water microbiome – Current understanding and future needs.

Published in:

Critical Reviews in Environmental Science & Technology, 2019, v. 49, n. 13, p. 1188, doi. 10.1080/10643389.2019.1571351

By:

Zhang, Ya;
Liu, Wen-Tso

Publication type:

Article

Ecology and molecular targets of hypermutation in the global microbiome.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23402-7

By:

Roux, Simon;
Paul, Blair G.;
Bagby, Sarah C.;
Nayfach, Stephen;
Allen, Michelle A.;
Attwood, Graeme;
Cavicchioli, Ricardo;
Chistoserdova, Ludmila;
Gruninger, Robert J.;
Hallam, Steven J.;
Hernandez, Maria E.;
Hess, Matthias;
Liu, Wen-Tso;
McAllister, Tim A.;
O'Malley, Michelle A.;
Peng, Xuefeng;
Rich, Virginia I.;
Saleska, Scott R.;
Eloe-Fadrosh, Emiley A.

Publication type:

Article

Identifying anaerobic amino acids degraders through the comparison of short‐term and long‐term enrichments.

Published in:

Environmental Microbiology Reports, 2020, v. 12, n. 2, p. 173, doi. 10.1111/1758-2229.12821

By:

Mei, Ran;
Nobu, Masaru K.;
Liu, Wen‐Tso

Publication type:

Article

Co‐occurrence network analysis reveals thermodynamics‐driven microbial interactions in methanogenic bioreactors.

Published in:

Environmental Microbiology Reports, 2018, v. 10, n. 6, p. 673, doi. 10.1111/1758-2229.12689

By:

Narihiro, Takashi;
Nobu, Masaru K.;
Bocher, Ben T. W.;
Mei, Ran;
Liu, Wen‐Tso

Publication type:

Article

Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01376-9

By:

Hawley, Alyse K.;
Nobu, Masaru K.;
Wright, Jody J.;
Durno, W. Evan;
Morgan-Lang, Connor;
Sage, Brent;
Schwientek, Patrick;
Swan, Brandon K.;
Rinke, Christian;
Torres-Beltrán, Monica;
Mewis, Keith;
Liu, Wen-Tso;
Stepanauskas, Ramunas;
Woyke, Tanja;
Hallam, Steven J.

Publication type:

Article

Direct treatment of high-strength soft drink wastewater using a down-flow hanging sponge reactor: performance and microbial community dynamics.

Published in:

Applied Microbiology & Biotechnology, 2017, v. 101, n. 14, p. 5925, doi. 10.1007/s00253-017-8326-1

By:

Liao, Junhui;
Fang, Curtis;
Yu, Jimmy;
Sathyagal, Arun;
Willman, Eric;
Liu, Wen-Tso

Publication type:

Article

Global metabolomic responses of Nitrosomonas europaea 19718 to cold stress and altered ammonia feeding patterns.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 4, p. 1843, doi. 10.1007/s00253-015-7095-y

By:

Lu, Huijie;
Ulanov, Alexander;
Nobu, Masaru;
Liu, Wen-Tso

Publication type:

Article

Effects of hydraulic retention time on aerobic granulation and granule growth kinetics at steady state with a fast start-up strategy.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 1, p. 469, doi. 10.1007/s00253-015-6993-3

By:

Liu, Yong-Qiang;
Zhang, Xing;
Zhang, Rui;
Liu, Wen-Tso;
Tay, Joo-Hwa

Publication type:

Article

Diversity and geochemical community assembly processes of the living rare biosphere in a sand-and-gravel aquifer ecosystem in the Midwestern United States.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-49996-z

By:

Yamamoto, Kyosuke;
Hackley, Keith C.;
Kelly, Walton R.;
Panno, Samuel V.;
Sekiguchi, Yuji;
Sanford, Robert A.;
Liu, Wen-Tso;
Kamagata, Yoichi;
Tamaki, Hideyuki

Publication type:

Article

Saliva-Based Diagnostics Using 16S rRNA Microarrays and Microfluidics.

Published in:

Annals of the New York Academy of Sciences, 2007, v. 1098, p. 345, doi. 10.1196/annals.1384.007

By:

STARKE, E. MICHELLE;
SMOOT, JAMES C.;
WU, JER‐HORNG;
LIU, WEN‐TSO;
CHANDLER, DARRELL;
STAHL, DAVID A.

Publication type:

Article

Miniaturized platforms for the detection of single-nucleotide polymorphisms.

Published in:

Analytical & Bioanalytical Chemistry, 2006, v. 386, n. 3, p. 427, doi. 10.1007/s00216-006-0552-9

By:

Ng, Johnson Kian-Kok;
Liu, Wen-Tso

Publication type:

Article

Insights into the phylogeny and coding potential of microbial dark matter.

Published in:

Nature, 2013, v. 499, n. 7459, p. 431, doi. 10.1038/nature12352

By:

Rinke, Christian;
Schwientek, Patrick;
Sczyrba, Alexander;
Ivanova, Natalia N.;
Anderson, Iain J.;
Cheng, Jan-Fang;
Darling, Aaron;
Malfatti, Stephanie;
Swan, Brandon K.;
Gies, Esther A.;
Dodsworth, Jeremy A.;
Hedlund, Brian P.;
Tsiamis, George;
Sievert, Stefan M.;
Liu, Wen-Tso;
Eisen, Jonathan A.;
Hallam, Steven J.;
Kyrpides, Nikos C.;
Stepanauskas, Ramunas;
Rubin, Edward M.

Publication type:

Article

Membrane biofouling characterization: effects of sample preparation procedures on biofilm structure and the microbial community.

Published in:

Biofouling, 2014, v. 30, n. 7, p. 813, doi. 10.1080/08927014.2014.935937

By:

Xue, Zheng;
Lu, Huijie;
Liu, Wen-Tso

Publication type:

Article

Catabolism and interactions of uncultured organisms shaped by eco-thermodynamics in methanogenic bioprocesses.

Published in:

Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-00885-y

By:

Nobu, Masaru K.;
Narihiro, Takashi;
Mei, Ran;
Kamagata, Yoichi;
Lee, Patrick K. H.;
Lee, Po-Heng;
McInerney, Michael J.;
Liu, Wen-Tso

Publication type:

Article

Machine learning-aided analyses of thousands of draft genomes reveal specific features of activated sludge processes.

Published in:

Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-0794-3

By:

Ye, Lin;
Mei, Ran;
Liu, Wen-Tso;
Ren, Hongqiang;
Zhang, Xu-Xiang

Publication type:

Article

Quantifying the contribution of microbial immigration in engineered water systems.

Published in:

Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0760-0

By:

Mei, Ran;
Liu, Wen-Tso

Publication type:

Article