Works by Liu, Hongde

Results: 72

Dissecting the Emerging Regulatory and Mechanistic Paradigms of Transcribed Conserved Non-Coding Elements in Breast Cancer.

Published in:

Biomolecules (2218-273X), 2025, v. 15, n. 5, p. 627, doi. 10.3390/biom15050627

By:

Zhu, Wenyong;
Huang, Hao;
Li, Qiong;
Gu, Yu;
Zhang, Rongxin;
Shu, Huiling;
Zhao, Yunqi;
Liu, Hongde;
Sun, Xiao

Publication type:

Article

Fabrication and formation mechanism of p-type lithium niobate crystals by molybdenum doping and polarization.

Published in:

Journal of Materials Science: Materials in Electronics, 2016, v. 27, n. 6, p. 5886, doi. 10.1007/s10854-016-4506-5

By:

Tian, Tian;
Kong, Yongfa;
Liu, Hongde;
Liu, Shiguo;
Li, Wei;
Chen, Shaolin;
Xu, Jingjun;
Xu, Jiayue;
Zeng, Haibo

Publication type:

Article

Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 30, doi. 10.1093/bioinformatics/btn583

By:

Jiansheng Wu;
Hongde Liu;
Xueye Duan;
Yan Ding;
Hongtao Wu;
Yunfei Bai;
Xiao Sun

Publication type:

Article

An Empirical Study of the Quality Governance Level of China's Civil Aircraft Industry.

Published in:

Systems, 2024, v. 12, n. 7, p. 247, doi. 10.3390/systems12070247

By:

Luo, Tingyu;
Liu, Hongde;
Shi, Xiang;
Meng, Peng;
Wang, Jun;
Fang, Weiguo

Publication type:

Article

Identifying Associations between DCE-MRI Radiomic Features and Expression Heterogeneity of Hallmark Pathways in Breast Cancer: A Multi-Center Radiogenomic Study.

Published in:

Genes, 2023, v. 14, n. 1, p. 28, doi. 10.3390/genes14010028

By:

Ming, Wenlong;
Zhu, Yanhui;
Li, Fuyu;
Bai, Yunfei;
Gu, Wanjun;
Liu, Yun;
Sun, Xiao;
Liu, Xiaoan;
Liu, Hongde

Publication type:

Article

Prediction of autism susceptibility genes based on association rules.

Published in:

Journal of Neuroscience Research, 2012, v. 90, n. 6, p. 1119, doi. 10.1002/jnr.23015

By:

Gong, Lejun;
Yan, Yunyang;
Xie, Jianming;
Liu, Hongde;
Sun, Xiao

Publication type:

Article

Identification of Prognostic Genes Related to Cell Senescence and Lipid Metabolism in Glioblastoma Based on Transcriptome and Single-Cell RNA-Seq Data.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 5, p. 1875, doi. 10.3390/ijms26051875

By:

Li, Qiong;
Liu, Hongde

Publication type:

Article

The nucleosome regulates the usage of polyadenylation sites in the human genome.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-912

By:

Huan Huang;
Jiao Chen;
Hongde Liu;
Xiao Sun

Publication type:

Article

Analysis of nucleosome positioning determined by DNA helix curvature in the human genome.

Published in:

BMC Genomics, 2011, v. 12, n. 1, p. 72, doi. 10.1186/1471-2164-12-72

By:

Hongde Liu;
Xueye Duan;
Shuangxin Yu;
Xiao Sun

Publication type:

Article

INVESTIGATION ON THE ELECTROCHEMISTRY OF RUTIN AND ITS ANALYTICAL APPLICATION.

Published in:

Analytical Letters, 2002, v. 35, n. 4, p. 677, doi. 10.1081/AL-120003169

By:

Kang, Jingwan;
Lu, Xiaoquan;
Zeng, Hongjuan;
Liu, Hongde;
Lu, Baoqiang

Publication type:

Article

The Patterns of Histone Modifications in the Vicinity of Transcription Factor Binding Sites in Human Lymphoblastoid Cell Lines.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0060002

By:

Nie, Yumin;
Liu, Hongde;
Sun, Xiao

Publication type:

Article

MicroRNA Genes Derived from Repetitive Elements and Expanded by Segmental Duplication Events in Mammalian Genomes.

Published in:

PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0017666

By:

Zhidong Yuan;
Xiao Sun;
Liu, Hongde;
Jianming Xie

Publication type:

Article

A deconvolution method and its application in analyzing the cellular fractions in acute myeloid leukemia samples.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-06888-1

By:

Li, Huamei;
Sharma, Amit;
Ming, Wenglong;
Sun, Xiao;
Liu, Hongde

Publication type:

Article

Genome organization in proximity to the BAP1 locus appears to play a pivotal role in a variety of cancers.

Published in:

Cancer Science, 2020, v. 111, n. 4, p. 1385, doi. 10.1111/cas.14319

By:

Sharma, Amit;
Liu, Hongde;
Tobar‐Tosse, Fabian;
Noll, Angela;
Chand Dakal, Tikam;
Li, Huamei;
Holz, Frank G.;
Loeffler, Karin U.;
Herwig‐Carl, Martina C.

Publication type:

Article

Nucleosome Distribution near the 3' Ends of Genes in the Human Genome.

Published in:

Bioscience, Biotechnology & Biochemistry, 2013, v. 77, n. 10, p. 2051, doi. 10.1271/bbb.130399

By:

Huan HUANG;
Hongde Liu;
Xiao Sun

Publication type:

Article

Recent Progress in Lithium Niobate: Optical Damage, Defect Simulation, and On‐Chip Devices.

Published in:

Advanced Materials, 2020, v. 32, n. 3, p. N.PAG, doi. 10.1002/adma.201806452

By:

Kong, Yongfa;
Bo, Fang;
Wang, Weiwei;
Zheng, Dahuai;
Liu, Hongde;
Zhang, Guoquan;
Rupp, Romano;
Xu, Jingjun

Publication type:

Article

Epigenetic Regulatory Enzymes: mutation Prevalence and Coexistence in Cancers.

Published in:

Cancer Investigation, 2021, v. 39, n. 3, p. 257, doi. 10.1080/07357907.2021.1872593

By:

Sharma, Amit;
Liu, Hongde;
Herwig-Carl, Martina C.;
Chand Dakal, Tikam;
Schmidt-Wolf, Ingo G H

Publication type:

Article

Crystal growth and optical characteristics of beryllium-free polyphosphate, KLa(PO<sub>3</sub>)<sub>4</sub>, a possible deep-ultraviolet nonlinear optical crystal.

Published in:

Scientific Reports, 2016, p. 25201, doi. 10.1038/srep25201

By:

Shan, Pai;
Sun, Tongqing;
Chen, Hong;
Liu, Hongde;
Chen, Shaolin;
Liu, Xuanwen;
Kong, Yongfa;
Xu, Jingjun

Publication type:

Article

Nucleosome alterations caused by mutations at modifiable histone residues in Saccharomyces cerevisiae.

Published in:

Scientific Reports, 2015, p. 15583, doi. 10.1038/srep15583

By:

Liu, Hongde;
Wang, Pingyan;
Liu, Lingjie;
Min, Zhu;
Luo, Kun;
Wan, Yakun

Publication type:

Article

Non-oncology drug (meticrane) shows anti-cancer ability in synergy with epigenetic inhibitors and appears to be involved passively in targeting cancer cells.

Published in:

Frontiers in Oncology, 2023, p. 1, doi. 10.3389/fonc.2023.1157366

By:

Yulu Wang;
Sharma, Amit;
Fangfang Ge;
Peng Chen;
Yu Yang;
Hongjia Liu;
Hongde Liu;
Chunxia Zhao;
Mittal, Lovika;
Asthana, Shailendra;
Schmidt-Wolf, Ingo G. H.

Publication type:

Article

The Influence of In 3+ on the Crystal Growth and Visible Band Photorefraction of Uranium-Doped Lithium Niobate Single Crystals.

Published in:

Crystals (2073-4352), 2024, v. 14, n. 4, p. 380, doi. 10.3390/cryst14040380

By:

Tian, Tian;
Xu, Wenjie;
Fang, Chenkai;
Chen, Yuheng;
Liu, Hongde;
Chu, Yaoqing;
Shen, Hui;
Xu, Jiayue

Publication type:

Article

Does the Weather Still Affect Me When I Shop at Home? The Impact of Weather on Online Shopping Behavior.

Published in:

Journal of Theoretical & Applied Electronic Commerce Research, 2024, v. 19, n. 3, p. 2289, doi. 10.3390/jtaer19030111

By:

Liu, Hongde;
Wang, Jun;
Zhang, Ruilin;
Liu, Ou

Publication type:

Article

scAnno: a deconvolution strategy-based automatic cell type annotation tool for single-cell RNA-sequencing data sets.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 3, p. 1, doi. 10.1093/bib/bbad179

By:

Liu, Hongjia;
Li, Huamei;
Sharma, Amit;
Huang, Wenjuan;
Pan, Duo;
Gu, Yu;
Lin, Lu;
Sun, Xiao;
Liu, Hongde

Publication type:

Article

DeepSSV: detecting somatic small variants in paired tumor and normal sequencing data with convolutional neural network.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa272

By:

Meng, Jing;
Victor, Brandon;
He, Zhen;
Liu, Hongde;
Jiang, Taijiao

Publication type:

Article

Regulator of G Protein Signaling 20 Correlates with Long Intergenic Non-Coding RNA (lincRNAs) Harboring Oncogenic Potential and Is Markedly Upregulated in Hepatocellular Carcinoma.

Published in:

Biology (2079-7737), 2022, v. 11, n. 8, p. N.PAG, doi. 10.3390/biology11081174

By:

Wang, Yulu;
Setiawan, Maria F.;
Liu, Hongde;
Dakal, Tikam Chand;
Liu, Hongjia;
Ge, Fangfang;
Rudan, Oliver;
Chen, Peng;
Zhao, Chunxia;
Gonzalez-Carmona, Maria A.;
Kornek, Miroslaw T.;
Strassburg, Christian P.;
Schmid, Matthias;
Maciaczyk, Jarek;
Sharma, Amit;
Schmidt-Wolf, Ingo G. H.

Publication type:

Article

Treatment Effect of Qingfei Paidu Decoction Combined With Conventional Treatment on COVID-19 Patients and Other Respiratory Diseases: A Multi-Center Retrospective Case Series.

Published in:

Frontiers in Pharmacology, 2022, v. 13, p. 1, doi. 10.3389/fphar.2022.849598

By:

Xingyu Zong;
Ning Liang;
Jingya Wang;
Huizhen Li;
Dingyi Wang;
Yaxin Chen;
Haili Zhang;
Liwen Jiao;
An Li;
Guihui Wu;
Jike Li;
Mingxuan Wang;
Hongde Liu;
Zhang Liu;
Shusen Zhao;
Jin Huang;
Qiuhua Huang;
Xiaoyan Wang;
Jin Qin;
Yan Ma

Publication type:

Article

Two Distinct Subtypes Revealed in Blood Transcriptome of Breast Cancer Patients With an Unsupervised Analysis.

Published in:

Frontiers in Oncology, 2019, p. 1, doi. 10.3389/fonc.2019.00985

By:

Ming, Wenlong;
Xie, Hui;
Hu, Zixi;
Chen, Yuanyuan;
Zhu, Yanhui;
Bai, Yunfei;
Liu, Hongde;
Sun, Xiao;
Liu, Yun;
Gu, Wanjun

Publication type:

Article

Whole Genome Identification of Potential G-Quadruplexes and Analysis of the G-Quadruplex Binding Domain for SARS-CoV-2.

Published in:

Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.587829

By:

Zhang, Rongxin;
Xiao, Ke;
Gu, Yu;
Liu, Hongde;
Sun, Xiao

Publication type:

Article

The Photorefractive Response of Zn and Mo Codoped LiNbO3 in the Visible Region.

Published in:

Crystals (2073-4352), 2019, v. 9, n. 5, p. 228, doi. 10.3390/cryst9050228

By:

Xue, Liyun;
Liu, Hongde;
Zheng, Dahuai;
Saeed, Shahzad;
Wang, Xuying;
Tian, Tian;
Zhu, Ling;
Kong, Yongfa;
Liu, Shiguo;
Chen, Shaolin;
Zhang, Ling;
Xu, Jingjun

Publication type:

Article

Photorefractive Properties of Molybdenum and Hafnium Co-Doped LiNbO3 Crystals.

Published in:

Crystals (2073-4352), 2018, v. 8, n. 8, p. 322, doi. 10.3390/cryst8080322

By:

Zhu, Ling;
Zheng, Dahuai;
Saeed, Shahzad;
Wang, Shuolin;
Liu, Hongde;
Kong, Yongfa;
Liu, Shiguo;
Chen, Shaolin;
Zhang, Ling;
Xu, Jingjun

Publication type:

Article

Improvement in the Photorefractive Response Speed and Mechanism of Pure Congruent Lithium Niobate Crystals by Increasing the Polarization Current.

Published in:

Crystals (2073-4352), 2017, v. 7, n. 12, p. 368, doi. 10.3390/cryst7120368

By:

Tian Tian;
Xiaodong Yan;
Yongfa Kong;
Hongde Liu;
Dahuai Zheng;
Shiguo Liu;
Shaolin Chen;
Jingjun Xu;
Jiayue Xu

Publication type:

Article

Pervasive transcription and its regulation.

Published in:

BioEssays, 2025, v. 47, n. 1, p. 1, doi. 10.1002/bies.202400208

By:

Liu, Hongjia;
Li, Qiong;
Sharma, Amit;
Luo, Kun;
Liu, Hongde

Publication type:

Article

Pervasive Transcription Represses Coding Gene Expression by Closing Their Nucleosome‐Depleted Regions.

Published in:

BioEssays, 2019, v. 41, n. 11, p. N.PAG, doi. 10.1002/bies.201900159

By:

Liu, Hongde;
Cai, Yiran

Publication type:

Article

Unsupervised Analysis Based on DCE-MRI Radiomics Features Revealed Three Novel Breast Cancer Subtypes with Distinct Clinical Outcomes and Biological Characteristics.

Published in:

Cancers, 2022, v. 14, n. 22, p. 5507, doi. 10.3390/cancers14225507

By:

Ming, Wenlong;
Li, Fuyu;
Zhu, Yanhui;
Bai, Yunfei;
Gu, Wanjun;
Liu, Yun;
Liu, Xiaoan;
Sun, Xiao;
Liu, Hongde

Publication type:

Article

WNT/β-Catenin-Mediated Resistance to Glucose Deprivation in Glioblastoma Stem-like Cells.

Published in:

Cancers, 2022, v. 14, n. 13, p. N.PAG, doi. 10.3390/cancers14133165

By:

Yusuf, Suad;
Aretz, Philippe;
Nickel, Ann-Christin;
Westhoff, Philipp;
Sharma, Amit;
Qin, Nan;
Remke, Marc;
Steiger, Hans-Jakob;
Hänggi, Daniel;
Liu, Hongjia;
Liu, Hongde;
Neumann, Silke;
Reifenberger, Guido;
Maciaczyk, Jarek

Publication type:

Article

PPAR-Responsive Elements Enriched with Alu Repeats May Contribute to Distinctive PPARγ–DNMT1 Interactions in the Genome.

Published in:

Cancers, 2021, v. 13, n. 16, p. 3993, doi. 10.3390/cancers13163993

By:

Sharma, Amit;
Tobar-Tosse, Fabian;
Chand Dakal, Tikam;
Liu, Hongde;
Biswas, Arijit;
Menon, Athira;
Paruchuri, Anoosha;
Katsonis, Panagiotis;
Lichtarge, Olivier;
Gromiha, M. Michael;
Ludwig, Michael;
Schmidt-Wolf, Ingo G. H.;
Holz, Frank G.;
Loeffler, Karin U.;
Herwig-Carl, Martina C.

Publication type:

Article

Characteristic analysis of chromosome multiple interactions in stem cell based on Hi-C.

Published in:

Chinese Journal of Bioinformatics, 2017, v. 15, n. 3, p. 201, doi. 10.3969/j.issn.1672-5565.201701008

By:

ZHANG Feng;
LIU Yajun;
XIE Jianming;
SUN Xiao;
LIU Hongde

Publication type:

Article

Enhanced Ultraviolet Damage Resistance in Magnesium Doped Lithium Niobate Crystals through Zirconium Co-Doping.

Published in:

Materials (1996-1944), 2021, v. 14, n. 4, p. 1017, doi. 10.3390/ma14041017

By:

Kong, Tengfei;
Luo, Yi;
Wang, Weiwei;
Kong, Hanxiao;
Fan, Zhiqin;
Liu, Hongde;
Vizman, Daniel

Publication type:

Article

Correction: Saeed, S., et al. Enhancement of Photorefraction in Vanadium-Doped Lithium Niobate through Iron and Zirconium Co-Doping. Materials 2019, Vol. 12, 3143.

Published in:

2020

By:

Saeed, Shahzad;
Liu, Hongde;
Xue, Liyun;
Zheng, Dahuai;
Liu, Shiguo;
Chen, Shaolin;
Kong, Yongfa;
Rupp, Romano;
Xu, Jingjun

Publication type:

Correction Notice

Linear Tuning of Phase-Matching Temperature in LiNbO3:Zr Crystals by MgO Co-Doping.

Published in:

Materials (1996-1944), 2019, v. 12, n. 24, p. 4155, doi. 10.3390/ma12244155

By:

Kong, Tengfei;
Liu, Hongde;
Xue, Liyun;
Wang, Weiwei;
Saeed, Shahzad;
Zheng, Dahuai;
Liu, Shiguo;
Chen, Shaolin;
Zhang, Ling;
Kong, Yongfa;
Xu, Jingjun

Publication type:

Article

Enhancement of Photorefraction in Vanadium-Doped Lithium Niobate through Iron and Zirconium Co-Doping.

Published in:

Materials (1996-1944), 2019, v. 12, n. 19, p. 3143, doi. 10.3390/ma12193143

By:

Saeed, Shahzad;
Liu, Hongde;
Xue, Liyun;
Zheng, Dahuai;
Liu, Shiguo;
Chen, Shaolin;
Kong, Yongfa;
Rupp, Romano;
Xu, Jingjun

Publication type:

Article

Fabrication and Characteristics of Heavily Fe-Doped LiNbO3/Si Heterojunction.

Published in:

Materials (1996-1944), 2019, v. 12, n. 17, p. 2659, doi. 10.3390/ma12172659

By:

Li, Wencan;
Cui, Jiao;
Zheng, Dahuai;
Wang, Weiwei;
Wang, Shuolin;
Song, Shaoqing;
Liu, Hongde;
Kong, Yongfa;
Xu, Jingjun

Publication type:

Article

P-Type Lithium Niobate Thin Films Fabricated by Nitrogen-Doping.

Published in:

Materials (1996-1944), 2019, v. 12, n. 5, p. 819, doi. 10.3390/ma12050819

By:

Li, Wencan;
Cui, Jiao;
Wang, Weiwei;
Zheng, Dahuai;
Jia, Longfei;
Saeed, Shahzad;
Liu, Hongde;
Rupp, Romano;
Kong, Yongfa;
Xu, Jingjun

Publication type:

Article

Effect of Defects on Spontaneous Polarization in Pure and Doped LiNbO3: First-Principles Calculations.

Published in:

Materials (1996-1944), 2019, v. 12, n. 1, p. 100, doi. 10.3390/ma12010100

By:

Wang, Weiwei;
Zheng, Dahuai;
Hu, Mengyuan;
Saeed, Shahzad;
Liu, Hongde;
Kong, Yongfa;
Zhang, Lixin;
Xu, Jingjun

Publication type:

Article

Functional role of histone variant Htz1 in the stress response to oleate in Saccharomyces cerevisiae.

Published in:

Bioscience Reports, 2015, v. 35, n. 4, p. 1, doi. 10.1042/BSR20150114

By:

Hongde Liu;
Guanghui Li;
Lingjie Liu;
Yakun Wan

Publication type:

Article

Distinct roles for histone chaperones in the deposition of Htz1 in chromatin.

Published in:

Bioscience Reports, 2014, v. 34, n. 5, p. 559, doi. 10.1042/BSR20140092

By:

Hongde Liu;
Min Zhu;
Yawen Mu;
Lingjie Liu;
Guanghui Li;
Yakun Wan

Publication type:

Article

High photorefractive sensitivity and fast response time of near-stoichiometric and MgO doped LiNbO3:Fe crystals.

Published in:

Crystal Research & Technology, 2006, v. 41, n. 8, p. 790

By:

Shaolin Chen;
Hongde Liu;
Ziheng Huang;
Jingjun Xu

Publication type:

Article

Investigating the Prognostic Role of Telomerase-Related Cellular Senescence Gene Signatures in Breast Cancer Using Machine Learning.

Published in:

Biomedicines, 2025, v. 13, n. 4, p. 826, doi. 10.3390/biomedicines13040826

By:

Li, Qiong;
Liu, Hongde

Publication type:

Article

Common genetic variants associated with Parkinson's disease display widespread signature of epigenetic plasticity.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-54865-w

By:

Sharma, Amit;
Osato, Naoki;
Liu, Hongde;
Asthana, Shailendra;
Dakal, Tikam Chand;
Ambrosini, Giovanna;
Bucher, Philipp;
Schmitt, Ina;
Wüllner, Ullrich

Publication type:

Article

A reliable approach of frequency analysis and its application for oscillating chemical systems.

Published in:

Journal of Chemometrics, 2005, v. 19, n. 11/12, p. 648, doi. 10.1002/cem.973

By:

Lu, Xiaoquan;
Chen, Jing;
Wang, Rui;
Wang, Lan;
Liu, Hongde

Publication type:

Article