Works by Liti, Gianni

Results: 73

Ploidy influences the functional attributes of de novo lager yeast hybrids.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 16, p. 7203, doi. 10.1007/s00253-016-7588-3

By:

Krogerus, Kristoffer;
Arvas, Mikko;
Chiara, Matteo;
Magalhães, Frederico;
Mattinen, Laura;
Oja, Merja;
Vidgren, Virve;
Yue, Jia-Xing;
Liti, Gianni;
Gibson, Brian

Publication type:

Article

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.

Published in:

GigaScience, 2017, v. 6, n. 2, p. 1, doi. 10.1093/gigascience/giw018

By:

Istace, Benjamin;
Friedrich, Anne;
d'Agata, Léo;
Faye, Sébastien;
Payen, Emilie;
Beluche, Odette;
Caradec, Claudia;
Davidas, Sabrina;
Cruaud, Corinne;
Liti, Gianni;
Lemainque, Arnaud;
Engelen, Stefan;
Wincker, Patrick;
Schacherer, Joseph;
Aury, Jean-Marc

Publication type:

Article

Transcriptional Activity and Protein Levels of Horizontally Acquired Genes in Yeast Reveal Hallmarks of Adaptation to Fermentative Environments.

Published in:

Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00293

By:

Devia, Joaquín;
Bastías, Camila;
Kessi-Pérez, Eduardo I.;
Villarroel, Carlos A.;
De Chiara, Matteo;
Cubillos, Francisco A.;
Liti, Gianni;
Martínez, Claudio;
Salinas, Francisco

Publication type:

Article

Resistance to Arsenite and Arsenate in Saccharomyces cerevisiae Arises through the Subtelomeric Expansion of a Cluster of Yeast Genes.

Published in:

International Journal of Environmental Research & Public Health, 2022, v. 19, n. 13, p. 8119, doi. 10.3390/ijerph19138119

By:

Stefanini, Irene;
Di Paola, Monica;
Liti, Gianni;
Marranci, Andrea;
Sebastiani, Federico;
Casalone, Enrico;
Cavalieri, Duccio

Publication type:

Article

Population genomics of domestic and wild yeasts.

Published in:

2009

By:

Liti, Gianni;
Carter, David M.;
Moses, Alan M.;
Warringer, Jonas;
Parts, Leopold;
James, Stephen A.;
Davey, Robert P.;
Roberts, Ian N.;
Burt, Austin;
Koufopanou, Vassiliki;
Tsai, Isheng J.;
Bergman, Casey M.;
Bensasson, Douda;
O’Kelly, Michael J. T.;
van Oudenaarden, Alexander;
Barton, David B. H.;
Bailes, Elizabeth;
Nguyen, Alex N.;
Jones, Matthew;
Quail, Michael A.

Publication type:

Letter

Differential Gene Expression and Allele Frequency Changes Favour Adaptation of a Heterogeneous Yeast Population to Nitrogen-Limited Fermentations.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.01204

By:

Kessi-Pérez, Eduardo I.;
Ponce, Belén;
Li, Jing;
Molinet, Jennifer;
Baeza, Camila;
Figueroa, David;
Bastías, Camila;
Gaete, Marco;
Liti, Gianni;
Díaz-Barrera, Alvaro;
Salinas, Francisco;
Martínez, Claudio

Publication type:

Article

Unlocking the functional potential of polyploid yeasts.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30221-x

By:

Mozzachiodi, Simone;
Krogerus, Kristoffer;
Gibson, Brian;
Nicolas, Alain;
Liti, Gianni

Publication type:

Article

Analysis of a Ty1-less variant of Saccharomyces paradoxus: the gain and loss of Ty1 elements.

Published in:

Yeast, 2004, v. 21, n. 8, p. 649, doi. 10.1002/yea.1129

By:

Moore, Sharon P.;
Liti, Gianni;
Stefanisko, Karen M.;
Nyswaner, Katherine M.;
Chang, Caroline;
Louis, Edward J.;
Garfinkel, David J.

Publication type:

Article

Ancient Evolutionary Trade-Offs between Yeast Ploidy States.

Published in:

PLoS Genetics, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.pgen.1003388

By:

Zörgö, Enikö;
Chwialkowska, Karolina;
Gjuvsland, Arne B.;
Garré, Elena;
Sunnerhagen, Per;
Liti, Gianni;
Blomberg, Anders;
Omholt, Stig W.;
Warringer, Jonas

Publication type:

Article

Recurrent Rearrangement during Adaptive Evolution in an Interspecific Yeast Hybrid Suggests a Model for Rapid Introgression.

Published in:

PLoS Genetics, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.pgen.1003366

By:

Dunn, Barbara;
Paulish, Terry;
Stanbery, Alison;
Piotrowski, Jeff;
Koniges, Gregory;
Kroll, Evgueny;
Louis, Edward J.;
Liti, Gianni;
Sherlock, Gavin;
Rosenzweig, Frank

Publication type:

Article

Advances in Quantitative Trait Analysis in Yeast.

Published in:

PLoS Genetics, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.pgen.1002912

By:

Liti, Gianni;
Louis, Edward J.

Publication type:

Article

Trait Variation in Yeast Is Defined by Population History.

Published in:

PLoS Genetics, 2011, v. 7, n. 6, p. 1, doi. 10.1371/journal.pgen.1002111

By:

Warringer, Jonas;
Zörgo, Enikö;
Cubillos, Francisco A.;
Zia, Amin;
Gjuvsland, Arne;
Simpson, Jared T.;
Forsmark, Annabelle;
Durbin, Richard;
Omholt, Stig W.;
Louis, Edward J.;
Liti, Gianni;
Moses, Alan;
Blomberg, Anders

Publication type:

Article

Segregating YKU80 and TLC1 Alleles Underlying Natural Variation in Telomere Properties in Wild Yeast.

Published in:

PLoS Genetics, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pgen.1000659

By:

Liti, Gianni;
Haricharan, Svasti;
Cubillos, Francisco A.;
Tierney, Anna L.;
Sharp, Sarah;
Bertuch, Alison A.;
Parts, Leopold;
Bailes, Elizabeth;
Louis, Edward J.

Publication type:

Article

CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 11, p. 4287, doi. 10.1534/g3.120.401498

By:

Stoneman, Hayley R.;
Wrobel, Russell L.;
Place, Michael;
Graham, Michael;
Krause, David J.;
De Chiara, Matteo;
Liti, Gianni;
Schacherer, Joseph;
Landick, Robert;
Gasch, Audrey P.;
Sato, Trey K.;
Hittinger, Chris Todd

Publication type:

Article

Identification of Nitrogen Consumption Genetic Variants in Yeast Through QTL Mapping and Bulk Segregant RNA-Seq Analyses.

Published in:

G3: Genes | Genomes | Genetics, 2017, v. 7, n. 6, p. 1693, doi. 10.1534/g3.117.042127

By:

Cubillos, Francisco A.;
Brice, Claire;
Molinet, Jennifer;
Tisné, Sebastién;
Abarca, Valentina;
Tapia, Sebastián M.;
Oporto, Christian;
García, Verónica;
Liti, Gianni;
Martínez, Claudio

Publication type:

Article

miRNAs Copy Number Variations Repertoire as Hallmark Indicator of Cancer Species Predisposition.

Published in:

Genes, 2022, v. 13, n. 6, p. 1046, doi. 10.3390/genes13061046

By:

Vischioni, Chiara;
Bove, Fabio;
De Chiara, Matteo;
Mandreoli, Federica;
Martoglia, Riccardo;
Pisi, Valentino;
Liti, Gianni;
Taccioli, Cristian

Publication type:

Article

Population Size, Sex and Purifying Selection: Comparative Genomics of Two Sister Taxa of the Wild Yeast Saccharomyces paradoxus.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 9, p. 1636, doi. 10.1093/gbe/evaa141

By:

Koufopanou, Vassiliki;
Lomas, Susan;
Pronina, Olga;
Almeida, Pedro;
Sampaio, Jose Paulo;
Mousseau, Timothy;
Liti, Gianni;
Burt, Austin

Publication type:

Article

Engineering heterothallic strains in fission yeast.

Published in:

Yeast, 2024, v. 41, n. 3, p. 87, doi. 10.1002/yea.3914

By:

García‐Ruano, Daniel;
Hsu, Ian;
Leray, Baptiste;
Billard, Bénédicte;
Liti, Gianni;
Coudreuse, Damien

Publication type:

Article

Cover Image.

Published in:

Yeast, 2024, v. 41, n. 3, p. i, doi. 10.1002/yea.3863

By:

García‐Ruano, Daniel;
Hsu, Ian;
Leray, Baptiste;
Billard, Bénédicte;
Liti, Gianni;
Coudreuse, Damien

Publication type:

Article

The budding yeast life cycle: More complex than anticipated?

Published in:

Yeast, 2021, v. 38, n. 1, p. 5, doi. 10.1002/yea.3533

By:

Fischer, Gilles;
Liti, Gianni;
Llorente, Bertrand

Publication type:

Article

André Goffeau's imprinting on second generation yeast "genomologists".

Published in:

Yeast, 2019, v. 36, n. 4, p. 167, doi. 10.1002/yea.3377

By:

Fairhead, Cécile;
Fischer, Gilles;
Liti, Gianni;
Neuvéglise, Cécile;
Schacherer, Joseph

Publication type:

Article

Special issues for a special community.

Published in:

Yeast, 2018, v. 35, n. 1, p. 3, doi. 10.1002/yea.3299

By:

Fischer, Gilles;
Liti, Gianni

Publication type:

Article

ISSY32 Highlights.

Published in:

2016

By:

Liti, Gianni;
Buzzini, Pietro

Publication type:

Editorial

Yeast 2.0: a new chapter.

Published in:

2016

By:

Liti, Gianni

Publication type:

Editorial

Saccharomyces pastorianus: genomic insights inspiring innovation for industry.

Published in:

Yeast, 2015, v. 32, n. 1, p. 17, doi. 10.1002/yea.3033

By:

Gibson, Brian;
Liti, Gianni

Publication type:

Article

Deletion of the Saccharomyces cerevisiae ARO8 gene, encoding an aromatic amino acid transaminase, enhances phenylethanol production from glucose.

Published in:

Yeast, 2015, v. 32, n. 1, p. 29, doi. 10.1002/yea.3015

By:

Romagnoli, Gabriele;
Knijnenburg, Theo A.;
Liti, Gianni;
Louis, Edward J.;
Pronk, Jack T.;
Daran, Jean‐Marc

Publication type:

Article

Budding Topics: insights from emerging scientists.

Published in:

2014

By:

Liti, Gianni

Publication type:

Editorial

A set of genetically diverged Saccharomyces cerevisiae strains with markerless deletions of multiple auxotrophic genes.

Published in:

Yeast, 2014, v. 31, n. 3, p. 91, doi. 10.1002/yea.2991

By:

Louvel, Hélène;
Gillet-Markowska, Alexandre;
Liti, Gianni;
Fischer, Gilles

Publication type:

Article

ICY 2012 Highlights.

Published in:

Yeast, 2013, v. 30, n. 8, p. 293, doi. 10.1002/yea.2966

By:

Abbas, Charles;
Kurtzman, Cletus;
Liti, Gianni

Publication type:

Article

'New' yeasts for a new Yeast.

Published in:

Yeast, 2012, v. 29, n. 10, p. 407, doi. 10.1002/yea.2923

By:

Armstrong, John;
Davis, Dana;
Liti, Gianni;
Oliver, Steve

Publication type:

Article

Inferences of evolutionary relationships from a population survey of LTR-retrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex.

Published in:

Yeast, 2005, v. 22, n. 3, p. 177, doi. 10.1002/yea.1200

By:

Liti, Gianni;
Peruffo, Antonella;
James, Steve A.;
Roberts, Ian N.;
Louis, Edward J.

Publication type:

Article

Elucidating the molecular architecture of adaptation via evolve and resequence experiments.

Published in:

2015

By:

Long, Anthony;
Liti, Gianni;
Luptak, Andrej;
Tenaillon, Olivier

Publication type:

journal article

Single nucleotide polymorphisms associated with wine fermentation and adaptation to nitrogen limitation in wild and domesticated yeast strains.

Published in:

Biological Research, 2023, v. 56, n. 1, p. 1, doi. 10.1186/s40659-023-00453-2

By:

Kessi-Pérez, Eduardo I.;
Acuña, Eric;
Bastías, Camila;
Fundora, Leyanis;
Villalobos-Cid, Manuel;
Romero, Andrés;
Khaiwal, Sakshi;
De Chiara, Matteo;
Liti, Gianni;
Salinas, Francisco;
Martínez, Claudio

Publication type:

Article

Long-read sequencing data analysis for yeasts.

Published in:

Nature Protocols, 2018, v. 13, n. 6, p. 1213, doi. 10.1038/nprot.2018.025

By:

Yue, Jia-Xing;
Liti, Gianni

Publication type:

Article

Extensive Recombination of a Yeast Diploid Hybrid through Meiotic Reversion.

Published in:

PLoS Genetics, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pgen.1005781

By:

Laureau, Raphaëlle;
Loeillet, Sophie;
Salinas, Francisco;
Bergström, Anders;
Legoix-Né, Patricia;
Liti, Gianni;
Nicolas, Alain

Publication type:

Article

Accurate Tracking of the Mutational Landscape of Diploid Hybrid Genomes.

Published in:

Molecular Biology & Evolution, 2019, v. 36, n. 12, p. 2861, doi. 10.1093/molbev/msz177

By:

Tattini, Lorenzo;
Tellini, Nicolò;
Mozzachiodi, Simone;
D'Angiolo, Melania;
Loeillet, Sophie;
Nicolas, Alain;
Liti, Gianni

Publication type:

Article

Shared Molecular Targets Confer Resistance over Short and Long Evolutionary Timescales.

Published in:

Molecular Biology & Evolution, 2019, v. 36, n. 4, p. 691, doi. 10.1093/molbev/msz006

By:

Li, Jing;
Vázquez-García, Ignacio;
Persson, Karl;
González, Asier;
Yue, Jia-Xing;
Barré, Benjamin;
Hall, Michael N;
Long, Anthony;
Warringer, Jonas;
Mustonen, Ville;
Liti, Gianni

Publication type:

Article

Concerted Evolution of Life Stage Performances Signals Recent Selection on Yeast Nitrogen Use.

Published in:

Molecular Biology & Evolution, 2015, v. 32, n. 1, p. 153, doi. 10.1093/molbev/msu285

By:

Ibstedt, Sebastian;
Stenberg, Simon;
Bagés, Sara;
Gjuvsland, Arne B.;
Salinas, Francisco;
Kourtchenko, Olga;
Samy, Jeevan K.A.;
Blomberg, Anders;
Omholt, Stig W.;
Liti, Gianni;
Beltran, Gemma;
Warringer, Jonas

Publication type:

Article

Standing Genetic Variation Drives Repeatable Experimental Evolution in Outcrossing Populations of Saccharomyces cerevisiae.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 12, p. 3228, doi. 10.1093/molbev/msu256

By:

Burke, Molly K.;
Liti, Gianni;
Long, Anthony D.

Publication type:

Article

A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 4, p. 872

By:

Bergström, Anders;
Simpson, Jared T.;
Salinas, Francisco;
Barré, Benjamin;
Parts, Leopold;
Zia, Amin;
Nguyen Ba, Alex N.;
Moses, Alan M.;
Louis, Edward J.;
Mustonen, Ville;
Warringer, Jonas;
Durbin, Richard;
Liti, Gianni

Publication type:

Article

Life History Shapes Trait Heredity by Accumulation of Loss-of-Function Alleles in Yeast.

Published in:

Molecular Biology & Evolution, 2012, v. 29, n. 7, p. 1781, doi. 10.1093/molbev/mss019

By:

Zörgö, Enikö;
Gjuvsland, Arne;
Cubillos, Francisco A.;
Louis, Edward J.;
Liti, Gianni;
Blomberg, Anders;
Omholt, Stig W.;
Warringer, Jonas

Publication type:

Article

Quantifying Selection Acting on a Complex Trait Using Allele Frequency Time Series Data.

Published in:

Molecular Biology & Evolution, 2012, v. 29, n. 4, p. 1187, doi. 10.1093/molbev/msr289

By:

Illingworth, Christopher J.R.;
Parts, Leopold;
Schiffels, Stephan;
Liti, Gianni;
Mustonen, Ville

Publication type:

Article

simuG: a general-purpose genome simulator.

Published in:

Bioinformatics, 2019, v. 35, n. 21, p. 4442, doi. 10.1093/bioinformatics/btz424

By:

Yue, Jia-Xing;
Liti, Gianni

Publication type:

Article

Filling annotation gaps in yeast genomes using genome-wide contact maps.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2105, doi. 10.1093/bioinformatics/btu162

By:

Marie-Nelly, Hervé;
Marbouty, Martial;
Cournac, Axel;
Liti, Gianni;
Fischer, Gilles;
Zimmer, Christophe;
Koszul, Romain

Publication type:

Article

High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-69

By:

Liti, Gianni;
Nguyen Ba, Alex N.;
Blythe, Martin;
Müller, Carolin A.;
Bergström, Anders;
Cubillos, Francisco A.;
Dafhnis-Calas, Felix;
Khoshraftar, Shima;
Malla, Sunir;
Mehta, Neel;
Siow, Cheuk C.;
Warringer, Jonas;
Moses, Alan M.;
Louis, Edward J.;
Nieduszynski, Conrad A.

Publication type:

Article

Discordant evolution of mitochondrial and nuclear yeast genomes at population level.

Published in:

BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-00786-4

By:

De Chiara, Matteo;
Friedrich, Anne;
Barré, Benjamin;
Breitenbach, Michael;
Schacherer, Joseph;
Liti, Gianni

Publication type:

Article

Spontaneous Mutation Rates and Spectra of Respiratory-Deficient Yeast.

Published in:

Biomolecules (2218-273X), 2023, v. 13, n. 3, p. 501, doi. 10.3390/biom13030501

By:

Tu, Xinyu;
Wang, Fan;
Liti, Gianni;
Breitenbach, Michael;
Yue, Jia-Xing;
Li, Jing

Publication type:

Article

Powerful decomposition of complex traits in a diploid model.

Published in:

Nature Communications, 2016, v. 7, n. 11, p. 13311, doi. 10.1038/ncomms13311

By:

Hallin, Johan;
Märtens, Kaspar;
Young, Alexander I.;
Zackrisson, Martin;
Salinas, Francisco;
Parts, Leopold;
Warringer, Jonas;
Liti, Gianni

Publication type:

Article

Predicting quantitative traits from genome and phenome with near perfect accuracy.

Published in:

Nature Communications, 2016, v. 7, n. 5, p. 11512, doi. 10.1038/ncomms11512

By:

Märtens, Kaspar;
Hallin, Johan;
Warringer, Jonas;
Liti, Gianni;
Parts, Leopold

Publication type:

Article

High-quality genome (re)assembly using chromosomal contact data.

Published in:

Nature Communications, 2014, v. 5, n. 12, p. 5695, doi. 10.1038/ncomms6695

By:

Marie-Nelly, Hervé;
Marbouty, Martial;
Cournac, Axel;
Flot, Jean-François;
Liti, Gianni;
Parodi, Dante Poggi;
Syan, Sylvie;
Guillén, Nancy;
Margeot, Antoine;
Zimmer, Christophe;
Koszul, Romain

Publication type:

Article