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The TAM, a Translocation and Assembly Module for protein assembly and potential conduit for phospholipid transfer.
- Published in:
- EMBO Reports, 2024, v. 25, n. 4, p. 1711, doi. 10.1038/s44319-024-00111-y
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- Article
Dual recognition of multiple signals in bacterial outer membrane proteins enhances assembly and maintains membrane integrity.
- Published in:
- eLife, 2024, p. 1, doi. 10.7554/eLife.90274
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- Publication type:
- Article
The evolutionary mechanism of noncarbapenemase carbapenem-resistant phenotypes in Klebsiella spp.
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- eLife, 2023, p. 1, doi. 10.7554/eLife.83107
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- Article
Adaptation of the periplasm to maintain spatial constraints essential for cell envelope processes and cell viability.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.73516
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- Publication type:
- Article
Tall tails: cryo-electron microscopy of phage tail DNA ejection conduits.
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- Biochemical Society Transactions, 2022, v. 50, n. 1, p. 459, doi. 10.1042/BST20210799
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- Article
A noncanonical chaperone interacts with drug efflux pumps during their assembly into bacterial outer membranes.
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- PLoS Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1371/journal.pbio.3001523
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- Publication type:
- Article
Neisseria gonorrhoeae-derived outer membrane vesicles package β-lactamases to promote antibiotic resistance.
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- MicroLife, 2022, v. 3, p. N.PAG, doi. 10.1093/femsml/uqac013
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- Publication type:
- Article
DeepBL: a deep learning-based approach for in silico discovery of beta-lactamases.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa301
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- Article
DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa125
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- Article
AcrDB: a database of anti-CRISPR operons in prokaryotes and viruses.
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- Nucleic Acids Research, 2021, v. 49, n. D1, p. D622, doi. 10.1093/nar/gkaa857
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- Article
AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins.
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- Nucleic Acids Research, 2021, v. 49, n. D1, p. D630, doi. 10.1093/nar/gkaa951
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- Article
Polymyxins Bind to the Cell Surface of Unculturable Acinetobacter baumannii and Cause Unique Dependent Resistance.
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- Advanced Science, 2020, v. 7, n. 15, p. 1, doi. 10.1002/advs.202000704
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- Article
Acinetobacter baumannii: Polymyxins Bind to the Cell Surface of Unculturable Acinetobacter baumannii and Cause Unique Dependent Resistance (Adv. Sci. 15/2020).
- Published in:
- Advanced Science, 2020, v. 7, n. 15, p. 1, doi. 10.1002/advs.202070082
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- Publication type:
- Article
The architecture and stabilisation of flagellotropic tailed bacteriophages.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17505-w
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- Article
First description of antimicrobial resistance in carbapenem-susceptible Klebsiella pneumoniae after imipenem treatment, driven by outer membrane remodeling.
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- BMC Microbiology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12866-020-01898-1
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- Article
PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. W1, p. W348, doi. 10.1093/nar/gkaa432
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- Publication type:
- Article
Hyperosmotic Infusion and Oxidized Surfaces Are Essential for Biofilm Formation of Staphylococcus capitis From the Neonatal Intensive Care Unit.
- Published in:
- Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.00920
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- Article
The crystal structure of the TonB‐dependent transporter YncD reveals a positively charged substrate‐binding site.
- Published in:
- Acta Crystallographica: Section D, Structural Biology, 2020, v. 76, n. 5, p. 484, doi. 10.1107/S2059798320004398
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- Publication type:
- Article
Dynamic Epidemiology and Virulence Characteristics of Carbapenem-Resistant Klebsiella pneumoniae in Wenzhou, China from 2003 to 2016.
- Published in:
- Infection & Drug Resistance, 2020, v. 13, p. 931, doi. 10.2147/IDR.S243032
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- Publication type:
- Article
PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins.
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- Bioinformatics, 2020, v. 36, n. 3, p. 704, doi. 10.1093/bioinformatics/btz629
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- Publication type:
- Article
The flagellotropic bacteriophage YSD1 targets Salmonella Typhi with a Chi‐like protein tail fibre.
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- Molecular Microbiology, 2019, v. 112, n. 6, p. 1831, doi. 10.1111/mmi.14396
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- Article
The multifunctional enzyme S-adenosylhomocysteine/methylthioadenosine nucleosidase is a key metabolic enzyme in the virulence of Salmonella enterica var Typhimurium.
- Published in:
- Biochemical Journal, 2019, v. 476, n. 22, p. 3435, doi. 10.1042/BCJ20190297
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- Publication type:
- Article
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2150, doi. 10.1093/bib/bby077
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- Publication type:
- Article
Protease-associated import systems are widespread in Gram-negative bacteria.
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- PLoS Genetics, 2019, v. 10, n. 15, p. 1, doi. 10.1371/journal.pgen.1008435
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- Article
Bastion3: a two-layer ensemble predictor of type III secreted effectors.
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- Bioinformatics, 2019, v. 35, n. 12, p. 2017, doi. 10.1093/bioinformatics/bty914
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- Publication type:
- Article
Filamentous phages: masters of a microbial sharing economy.
- Published in:
- EMBO Reports, 2019, v. 20, n. 6, p. N.PAG, doi. 10.15252/embr.201847427
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- Publication type:
- Article
Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches.
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- Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 931, doi. 10.1093/bib/bbx164
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- Publication type:
- Article
Positive-unlabelled learning of glycosylation sites in the human proteome.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2700-1
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- Article
cryoEM‐Guided Development of Antibiotics for Drug‐Resistant Bacteria.
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- ChemMedChem, 2019, v. 14, n. 5, p. 527, doi. 10.1002/cmdc.201900042
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- Publication type:
- Article
Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome.
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- Bioinformatics, 2018, v. 34, n. 24, p. 4223, doi. 10.1093/bioinformatics/bty522
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- Publication type:
- Article
An investigation into the Omp85 protein BamK in hypervirulent Klebsiella pneumoniae, and its role in outer membrane biogenesis.
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- Molecular Microbiology, 2018, v. 109, n. 5, p. 584, doi. 10.1111/mmi.13990
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- Article
FusC, a member of the M16 protease family acquired by bacteria for iron piracy against plants.
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- PLoS Biology, 2018, v. 16, n. 8, p. 1, doi. 10.1371/journal.pbio.2006026
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- Article
Genome-scale metabolic modeling of responses to polymyxins in Pseudomonas aeruginosa.
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- GigaScience, 2018, v. 7, n. 4, p. 1, doi. 10.1093/gigascience/giy021
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- Publication type:
- Article
Outer membrane vesicles from Neisseria gonorrhoeae target PorB to mitochondria and induce apoptosis.
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- PLoS Pathogens, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.ppat.1006945
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- Article
Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI.
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- Briefings in Bioinformatics, 2018, v. 19, n. 1, p. 148, doi. 10.1093/bib/bbw100
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- Article
Reductive evolution in outer membrane protein biogenesis has not compromised cell surface complexity in Helicobacter pylori.
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- MicrobiologyOpen, 2017, v. 6, n. 6, p. n/a, doi. 10.1002/mbo3.513
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- Article
The TPR domain of BepA is required for productive interaction with substrate proteins and the β-barrel assembly machinery complex.
- Published in:
- Molecular Microbiology, 2017, v. 106, n. 5, p. 760, doi. 10.1111/mmi.13844
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- Article
Phylogenetic Analysis of Klebsiella pneumoniae from Hospitalized Children, Pakistan.
- Published in:
- 2017
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- Publication type:
- journal article
Structural basis for substrate selection by the translocation and assembly module of the β-barrel assembly machinery.
- Published in:
- Molecular Microbiology, 2017, v. 106, n. 1, p. 142, doi. 10.1111/mmi.13757
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- Publication type:
- Article
POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles.
- Published in:
- Bioinformatics, 2017, v. 33, n. 17, p. 2756, doi. 10.1093/bioinformatics/btx302
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- Publication type:
- Article
Extensively Drug-Resistant Klebsiella pneumoniae Causing Nosocomial Bloodstream Infections in China: Molecular Investigation of Antibiotic Resistance Determinants, Informing Therapy, and Clinical Outcomes.
- Published in:
- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01230
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- Publication type:
- Article
SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems.
- Published in:
- Scientific Reports, 2017, p. 41031, doi. 10.1038/srep41031
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- Publication type:
- Article
The modular nature of the β-barrel assembly machinery, illustrated in Borrelia burgdorferi.
- Published in:
- Molecular Microbiology, 2016, v. 102, n. 5, p. 753, doi. 10.1111/mmi.13527
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- Publication type:
- Article
GlycoMine<sup>struct</sup>: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features.
- Published in:
- Scientific Reports, 2016, p. 34595, doi. 10.1038/srep34595
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- Publication type:
- Article
Conserved Features in the Structure, Mechanism, and Biogenesis of the Inverse Autotransporter Protein Family.
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- Genome Biology & Evolution, 2016, v. 8, n. 6, p. 1690, doi. 10.1093/gbe/evw112
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- Article
Antibiotic regimen based on population analysis of residing persister cells eradicates Staphylococcus epidermidis biofilms.
- Published in:
- Scientific Reports, 2015, p. 18578, doi. 10.1038/srep18578
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- Publication type:
- Article
Assembly of the secretion pores GspD, Wza and CsgG into bacterial outer membranes does not require the Omp85 proteins BamA or TamA.
- Published in:
- Molecular Microbiology, 2015, v. 97, n. 4, p. 616, doi. 10.1111/mmi.13055
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- Publication type:
- Article
Conserved features in TamA enable interaction with TamB to drive the activity of the translocation and assembly module.
- Published in:
- Scientific Reports, 2015, p. 12905, doi. 10.1038/srep12905
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- Publication type:
- Article
Evolution of the Translocation and Assembly Module (TAM).
- Published in:
- Genome Biology & Evolution, 2015, v. 7, n. 6, p. 1628, doi. 10.1093/gbe/evv097
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- Publication type:
- Article
Of linkers and autochaperones: an unambiguous nomenclature to identify common and uncommon themes for autotransporter secretion.
- Published in:
- Molecular Microbiology, 2015, v. 95, n. 1, p. 1, doi. 10.1111/mmi.12838
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- Article