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Deterministic and Stochastic Models of NFκB Pathway.
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- Cardiovascular Toxicology, 2007, v. 7, n. 4, p. 215, doi. 10.1007/s12012-007-9003-x
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- Article
Clustering reveals limits of parameter identifiability in multi-parameter models of biochemical dynamics.
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- BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0205-8
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- Article
Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-67
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- Article
RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKa.
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- Science Signaling, 2017, v. 10, n. 469, p. 1, doi. 10.1126/scisignal.aai8482
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- Article
A plausible identifiable model of the canonical NF-κB signaling pathway.
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- PLoS ONE, 2023, v. 17, n. 6, p. 1, doi. 10.1371/journal.pone.0286416
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- Article
How the Number of Alleles Influences Gene Expression.
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- Journal of Statistical Physics, 2007, v. 128, n. 1/2, p. 511, doi. 10.1007/s10955-006-9218-4
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- Article
Relaxation oscillations and hierarchy of feedbacks in MAPK signaling.
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- Scientific Reports, 2017, p. 38244, doi. 10.1038/srep38244
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- Article
Computational Analysis of an Autophagy/Translation Switch Based on Mutual Inhibition of MTORC1 and ULK1.
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- PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0116550
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- Article
Dynamic Cross Talk Model of the Epithelial Innate Immune Response to Double-Stranded RNA Stimulation: Coordinated Dynamics Emerging from Cell-Level Noise.
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- PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0093396
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- Article
Spontaneous NF-κB Activation by Autocrine TNFα Signaling: A Computational Analysis.
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- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0078887
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Modeling and measurement of signaling outcomes affecting decision making in noisy intracellular networks using machine learning methods.
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- Integrative Biology, 2020, v. 12, n. 5, p. 122, doi. 10.1093/intbio/zyaa009
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- Article
Statics of Rigid Units Chain.
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- International Journal of Bifurcation & Chaos in Applied Sciences & Engineering, 2001, v. 11, n. 3, p. 845, doi. 10.1142/S0218127401002377
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- Article
Genetic toggle switch controlled by bacterial growth rate.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0483-4
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- Article
Single TNFα trimers mediating NF-κB activation: stochastic robustness of NF-κB signaling.
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- BMC Bioinformatics, 2007, v. 8, p. 376, doi. 10.1186/1471-2105-8-376
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- Article
Slow nucleosome dynamics set the transcriptional speed limit and induce RNA polymerase II traffic jams and bursts.
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- PLoS Computational Biology, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pcbi.1009811
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- Article
Single-cell NF-κB dynamics reveal digital activation and analogue information processing.
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- Nature, 2010, v. 466, n. 7303, p. 267, doi. 10.1038/nature09145
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- Article
Quasi-static solutions for quantum vortex motion under the localized induction approximation.
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- Journal of Fluid Mechanics, 2003, v. 477, n. 1, p. 321, doi. 10.1017/S0022112002003282
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- Article
B Cell Activation Triggered by the Formation of the Small Receptor Cluster: A Computational Study.
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- PLoS Computational Biology, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pcbi.1002197
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- Article
The Spread of SARS-CoV-2 Variant Omicron with a Doubling Time of 2.0–3.3 Days Can Be Explained by Immune Evasion.
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- Viruses (1999-4915), 2022, v. 14, n. 2, p. 294, doi. 10.3390/v14020294
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- Article
SARS-CoV-2 Variant of Concern 202012/01 Has about Twofold Replicative Advantage and Acquires Concerning Mutations.
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- Viruses (1999-4915), 2021, v. 13, n. 3, p. 392, doi. 10.3390/v13030392
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- Article
Pareto-based evaluation of national responses to COVID-19 pandemic shows that saving lives and protecting economy are non-trade-off objectives.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-81869-2
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Model-based optimization of combination protocols for irradiation-insensitive cancers.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-69380-6
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Single-Cell Measurements and Modeling and Computation of Decision-Making Errors in a Molecular Signaling System with Two Output Molecules.
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- Biology (2079-7737), 2023, v. 12, n. 12, p. 1461, doi. 10.3390/biology12121461
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- Article
Nonself RNA rewires IFN-β signaling: A mathematical model of the innate immune response.
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- Science Signaling, 2023, v. 16, n. 815, p. 1, doi. 10.1126/scisignal.abq1173
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- Article
The MAPK/ERK channel capacity exceeds 6 bit/hour.
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- PLoS Computational Biology, 2023, v. 19, n. 5, p. 1, doi. 10.1371/journal.pcbi.1011155
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- Article
Computation and measurement of cell decision making errors using single cell data.
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- PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005436
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- Article
Feedbacks, Bifurcations, and Cell Fate Decision-Making in the p53 System.
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- PLoS Computational Biology, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004787
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- Article
Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02640-8
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- Article
Importins promote high-frequency NF-κB oscillations increasing information channel capacity.
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- Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0164-z
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Cancer heterogeneity and multilayer spatial evolutionary games.
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- Biology Direct, 2016, v. 117, p. 1, doi. 10.1186/s13062-016-0156-z
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Design principles for cancer therapy guided by changes in complexity of protein-protein interaction networks.
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- Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0058-5
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- Article
Dynamics of COVID-19 pandemic at constant and time-dependent contact rates.
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- Mathematical Modelling of Natural Phenomena, 2020, v. 15, p. 1, doi. 10.1051/mmnp/2020011
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CORONAVIRUS - SCIENTIFIC INSIGHTS AND SOCIETAL ASPECTS.
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- Mathematical Modelling of Natural Phenomena, 2020, v. 15, p. N.PAG, doi. 10.1051/mmnp/2020010
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- Article
A shear stress micromodel of urinary tract infection by the Escherichia coli producing Dr adhesin.
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- PLoS Pathogens, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.ppat.1008247
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- Article
SPATKIN: a simulator for rule-based modeling of biomolecular site dynamics on surfaces.
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- Bioinformatics, 2017, v. 33, n. 22, p. 3667, doi. 10.1093/bioinformatics/btx456
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- Article
Predictive power of non-identifiable models.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-37939-8
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- Article
Electrochemical Immunosensors Based on Screen-Printed Gold and Glassy Carbon Electrodes: Comparison of Performance for Respiratory Syncytial Virus Detection.
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- Biosensors (2079-6374), 2020, v. 10, n. 11, p. 175, doi. 10.3390/bios10110175
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Polarization of concave domains by traveling wave pinning.
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- PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0190372
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Antagonism between viral infection and innate immunity at the single-cell level.
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- PLoS Pathogens, 2023, v. 19, n. 9, p. 1, doi. 10.1371/journal.ppat.1011597
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- Article