Works by Linial, Michal

Results: 119

Temporal Shifts in MicroRNAs Signify the Inflammatory State of Primary Murine Microglial Cells.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 12, p. 5677, doi. 10.3390/ijms26125677

By:

Zohar, Keren;
Lezmi, Elyad;
Reichert, Fanny;
Eliyahu, Tsiona;
Rotshenker, Shlomo;
Weinstock, Marta;
Linial, Michal

Publication type:

Article

Mass Informatics: From Mass Spectrometry Peaks to Biological Pathways.

Published in:

Israel Journal of Chemistry, 2013, v. 53, n. 3/4, p. 157, doi. 10.1002/ijch.201200076

By:

Askenazi, Manor;
Linial, Michal

Publication type:

Article

The SARS-CoV-2 Exerts a Distinctive Strategy for Interacting with the ACE2 Human Receptor.

Published in:

Viruses (1999-4915), 2020, v. 12, n. 5, p. 497, doi. 10.3390/v12050497

By:

Brielle, Esther S.;
Schneidman-Duhovny, Dina;
Linial, Michal

Publication type:

Article

Giant Viruses—Big Surprises.

Published in:

Viruses (1999-4915), 2019, v. 11, n. 5, p. 404, doi. 10.3390/v11050404

By:

Brandes, Nadav;
Linial, Michal

Publication type:

Article

PWAS: proteome-wide association study—linking genes and phenotypes by functional variation in proteins.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02089-x

By:

Brandes, Nadav;
Linial, Nathan;
Linial, Michal

Publication type:

Article

PWAS: proteome-wide association study—linking genes and phenotypes by functional variation in proteins.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02089-x

By:

Brandes, Nadav;
Linial, Nathan;
Linial, Michal

Publication type:

Article

Cellular processes underlying maturation of P19 neurons: Changes in protein folding regimen and cytoskeleton organization.

Published in:

Proteomics, 2007, v. 7, n. 6, p. 910, doi. 10.1002/pmic.200600547

By:

Inberg, Alex;
Bogoch, Yoel;
Bledi, Yaniv;
Linial, Michal

Publication type:

Article

Characteristics of myeloproliferative neoplasms in patients exposed to ionizing radiation following the Chernobyl nuclear accident.

Published in:

American Journal of Hematology, 2019, v. 94, n. 1, p. 62, doi. 10.1002/ajh.25307

By:

Poluben, Larysa;
Puligandla, Maneka;
Neuberg, Donna;
Bryke, Christine R.;
Hsu, Yahsuan;
Shumeiko, Oleksandr;
Yuan, Xin;
Voznesensky, Olga;
Pihan, German;
Adam, Miriam;
Fraenkel, Ernest;
Rasnic, Roni;
Linial, Michal;
Klymenko, Sergiy;
Balk, Steven P.;
Fraenkel, Paula G.

Publication type:

Article

ProteinBERT: a universal deep-learning model of protein sequence and function.

Published in:

Bioinformatics, 2022, v. 38, n. 8, p. 2102, doi. 10.1093/bioinformatics/btac020

By:

Brandes, Nadav;
Ofer, Dan;
Peleg, Yam;
Rappoport, Nadav;
Linial, Michal

Publication type:

Article

Oxidative Stress and Its Modulation by Ladostigil Alter the Expression of Abundant Long Non-Coding RNAs in SH-SY5Y Cells.

Published in:

Non-Coding RNA, 2022, v. 8, n. 6, p. 72, doi. 10.3390/ncrna8060072

By:

Zohar, Keren;
Giladi, Eliran;
Eliyahu, Tsiona;
Linial, Michal

Publication type:

Article

Ladostigil Attenuates Induced Oxidative Stress in Human Neuroblast-like SH-SY5Y Cells.

Published in:

Biomedicines, 2021, v. 9, n. 9, p. 1251, doi. 10.3390/biomedicines9091251

By:

Zohar, Keren;
Lezmi, Elyad;
Eliyahu, Tsiona;
Linial, Michal

Publication type:

Article

Toward a combinatorial nature of microRNA regulation in human cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 19, p. 9404, doi. 10.1093/nar/gks759

By:

Balaga, Ohad;
Friedman, Yitzhak;
Linial, Michal

Publication type:

Article

ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree.

Published in:

Nucleic Acids Research, 2012, p. D313, doi. 10.1093/nar/gkr1027

By:

Rappoport, Nadav;
Karsenty, Solange;
Stern, Amos;
Linial, Nathan;
Linial, Michal

Publication type:

Article

ARISTO: ontological classification of small molecules by electron ionization-mass spectrometry.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W505, doi. 10.1093/nar/gkr403

By:

Askenazi, Manor;
Linial, Michal

Publication type:

Article

PANDORA: analysis of protein and peptide sets through the hierarchical integration of annotations.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W84, doi. 10.1093/nar/gkq320

By:

Rappoport, Nadav;
Fromer, Menachem;
Schweiger, Regev;
Linial, Michal

Publication type:

Article

ClanTox: a classifier of short animal toxins.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W363, doi. 10.1093/nar/gkp299

By:

Naamati, Guy;
Askenazi, Manor;
Linial, Michal

Publication type:

Article

EVEREST: a collection of evolutionary conserved protein domains.

Published in:

Nucleic Acids Research, 2007, v. 35, p. d241, doi. 10.1093/nar/gkl850

By:

Portugaly, Elon;
Linial, Nathan;
Linial, Michal

Publication type:

Article

ProTarget: automatic prediction of protein structure novelty.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w81, doi. 10.1093/nar/gki389

By:

Sasson, Ori;
Linial, Michal

Publication type:

Article

ProTeus: identifying signatures in protein termini.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w277, doi. 10.1093/nar/gki371

By:

Bahir, Iris;
Linial, Michal

Publication type:

Article

ProtoNet 4.0: A hierarchical classification of one million protein sequences.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d216

By:

Kaplan, Noam;
Sasson, Ori;
Inbar, Uri;
Friedlich, Moriah;
Fromer, Menachem;
Fleischer, Hillel;
Portugaly, Elon;
Linial, Nathan;
Linial, Michal

Publication type:

Article

PANDORA: keyword‐based analysis of protein sets by integration of annotation sources.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 19, p. 5617, doi. 10.1093/nar/gkg769

By:

Kaplan, Noam;
Vaaknin, Avishay;
Linial, Michal

Publication type:

Article

ProtoNet: hierarchical classification of the protein space.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 1, p. 348, doi. 10.1093/nar/gkg096

By:

Sasson, Ori;
Vaaknin, Avishay;
Fleischer, Hillel;
Portugaly, Elon;
Bilu, Yonatan;
Linial, Nathan;
Linial, Michal

Publication type:

Article

Functional grouping based on signatures in protein termini.

Published in:

Proteins, 2006, v. 63, n. 4, p. 996, doi. 10.1002/prot.20903

By:

Bahir, Iris;
Linial, Michal

Publication type:

Article

A robust method to detect structural and functional remote homologues.

Published in:

Proteins, 2004, v. 57, n. 3, p. 531, doi. 10.1002/prot.20235

By:

Shachar, Ori;
Linial, Michal

Publication type:

Article

ProtoMap: Automatic classification of protein sequences, a hierarchy of protein families, and local maps of the protein space.

Published in:

Proteins, 1999, v. 37, n. 3, p. 360, doi. 10.1002/(SICI)1097-0134(19991115)37:3<360::AID-PROT5>3.0.CO;2-Z

By:

Yona, Golan;
Linial, Nathan;
Linial, Michal

Publication type:

Article

Human genes escaping X-inactivation revealed by single cell expression data.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-5507-6

By:

Katsir, Kerem Wainer;
Linial, Michal

Publication type:

Article

Prenatal stress diminishes gender differences in behavior and in expression of hippocampal synaptic genes and proteins in rats.

Published in:

Hippocampus, 2011, v. 21, n. 10, p. 1114, doi. 10.1002/hipo.20825

By:

Biala, Ya'arit Nachum;
Bogoch, Yoel;
Bejar, Corina;
Linial, Michal;
Weinstock, Marta

Publication type:

Article

Unsupervised feature selection under perturbations: meeting the challenges of biological data.

Published in:

Bioinformatics, 2007, v. 23, n. 24, p. 3343, doi. 10.1093/bioinformatics/btm528

By:

Roy Varshavsky;
Assaf Gottlieb;
David Horn;
Michal Linial

Publication type:

Article

Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains.

Published in:

Bioinformatics, 2005, v. 21, p. i378, doi. 10.1093/bioinformatics/bti1035

By:

Sadka, Tali;
Linial, Michal

Publication type:

Article

Predicting fold novelty based on ProtoNet hierarchical classification.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1020, doi. 10.1093/bioinformatics/bti135

By:

Ilona Kifer;
Ori Sasson;
Michal Linial

Publication type:

Article

Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i378, doi. 10.1093/bioinformatics/bti1035

By:

Tali Sadka;
Michal Linial

Publication type:

Article

The metric space of proteins--comparative study of clustering algorithms.

Published in:

Bioinformatics, 2002, v. 18, p. S14, doi. 10.1093/bioinformatics/18.suppl_1.S14

By:

Sasson, Ori;
Linial, Nathan;
Linial, Michal

Publication type:

Article

Selecting targets for structural determination by navigating in a graph of protein families.

Published in:

Bioinformatics, 2002, v. 18, n. 7, p. 899, doi. 10.1093/bioinformatics/18.7.899

By:

Portugaly, Elon;
Kifer, Ilona;
Linial, Michal

Publication type:

Article

The Rise and Fall of a Local SARS-CoV-2 Variant with the Spike Protein Mutation L452R.

Published in:

Vaccines, 2021, v. 9, n. 8, p. 937, doi. 10.3390/vaccines9080937

By:

Mor, Orna;
Mandelboim, Michal;
Fleishon, Shay;
Bucris, Efrat;
Bar-Ilan, Dana;
Linial, Michal;
Nemet, Ital;
Kliker, Limor;
Lustig, Yaniv;
Mendelson, Ella S.;
Zuckerman, Neta S.

Publication type:

Article

A Unique SARS-CoV-2 Spike Protein P681H Variant Detected in Israel.

Published in:

Vaccines, 2021, v. 9, n. 6, p. 616, doi. 10.3390/vaccines9060616

By:

Zuckerman, Neta S.;
Fleishon, Shay;
Bucris, Efrat;
Bar-Ilan, Dana;
Linial, Michal;
Bar-Or, Itay;
Indenbaum, Victoria;
Weil, Merav;
Lustig, Yaniv;
Mendelson, Ella;
Mandelboim, Michal;
Mor, Orna;
Zuckerman, Neta

Publication type:

Article

Bladder Cancer Immunotherapy by BCG Is Associated with a Significantly Reduced Risk of Alzheimer's Disease and Parkinson's Disease.

Published in:

Vaccines, 2021, v. 9, n. 5, p. 491, doi. 10.3390/vaccines9050491

By:

Klinger, Danielle;
Hill, Brian L.;
Barda, Noam;
Halperin, Eran;
Gofrit, Ofer N.;
Greenblatt, Charles L.;
Rappoport, Nadav;
Linial, Michal;
Bercovier, Hervé;
La Torre, Giuseppe

Publication type:

Article

Significantly Improved COVID-19 Outcomes in Countries with Higher BCG Vaccination Coverage: A Multivariable Analysis.

Published in:

Vaccines, 2020, v. 8, n. 3, p. 378, doi. 10.3390/vaccines8030378

By:

Klinger, Danielle;
Blass, Ido;
Rappoport, Nadav;
Linial, Michal

Publication type:

Article

Revisiting the Risk Factors for Endometriosis: A Machine Learning Approach.

Published in:

Journal of Personalized Medicine, 2022, v. 12, n. 7, p. 1114, doi. 10.3390/jpm12071114

By:

Blass, Ido;
Sahar, Tali;
Shraibman, Adi;
Ofer, Dan;
Rappoport, Nadav;
Linial, Michal

Publication type:

Article

Body Mass Index and Birth Weight Improve Polygenic Risk Score for Type 2 Diabetes.

Published in:

Journal of Personalized Medicine, 2021, v. 11, n. 6, p. 582, doi. 10.3390/jpm11060582

By:

Moldovan, Avigail;
Waldman, Yedael Y.;
Brandes, Nadav;
Linial, Michal

Publication type:

Article

Knockdown of DJ-1 Resulted in a Coordinated Activation of the Innate Immune Antiviral Response in HEK293 Cell Line.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 14, p. 7550, doi. 10.3390/ijms25147550

By:

Zohar, Keren;
Linial, Michal

Publication type:

Article

Coordinated Transcriptional Waves Define the Inflammatory Response of Primary Microglial Culture.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 13, p. 10928, doi. 10.3390/ijms241310928

By:

Zohar, Keren;
Lezmi, Elyad;
Reichert, Fanny;
Eliyahu, Tsiona;
Rotshenker, Shlomo;
Weinstock, Marta;
Linial, Michal

Publication type:

Article

Challenging Cellular Homeostasis: Spatial and Temporal Regulation of miRNAs.

Published in:

2022

By:

van Wijk, Naomi;
Zohar, Keren;
Linial, Michal

Publication type:

Literature Review

Spliceosome-Associated microRNAs Signify Breast Cancer Cells and Portray Potential Novel Nuclear Targets.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 21, p. 8132, doi. 10.3390/ijms21218132

By:

Mahlab-Aviv, Shelly;
Zohar, Keren;
Cohen, Yael;
Peretz, Ayelet R.;
Eliyahu, Tsiona;
Linial, Michal;
Sperling, Ruth

Publication type:

Article

The complete peptide dictionary - A meta-proteomics resource.

Published in:

Proteomics, 2010, v. 10, n. 23, p. 4306, doi. 10.1002/pmic.201000270

By:

Askenazi, Manor;
Marto, Jarrod A.;
Linial, Michal

Publication type:

Article

Discovering predisposing genes for hereditary breast cancer using deep learning.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 4, p. 1, doi. 10.1093/bib/bbae346

By:

Passi, Gal;
Lieberman, Sari;
Zahdeh, Fouad;
Murik, Omer;
Renbaum, Paul;
Beeri, Rachel;
Linial, Michal;
May, Dalit;
Levy-Lahad, Ephrat;
Schneidman-Duhovny, Dina

Publication type:

Article

De novo STXBP1 mutation in a child with developmental delay and spasticity reveals a major structural alteration in the interface with syntaxin 1A.

Published in:

American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 2020, v. 183, n. 7, p. 412, doi. 10.1002/ajmg.b.32816

By:

Banne, Ehud;
Falik‐Zaccai, Tzipora;
Brielle, Esther;
Kalfon, Limor;
Ladany, Hagay;
Klinger, Danielle;
Schneidman‐Duhovny, Dina;
Linial, Michal

Publication type:

Article

α-Latrotoxin is a Potent Inducer of Neurotransmitter Release in Torpedo Electric Organ-Functional and Morphological Characterization.

Published in:

European Journal of Neuroscience, 1995, v. 7, n. 4, p. 742, doi. 10.1111/j.1460-9568.1995.tb00678.x

By:

Linial, Michal;
Llouz, Nili;
Feinstein, Naomi

Publication type:

Article

Functional annotation prediction: All for one and one for all.

Published in:

Protein Science: A Publication of the Protein Society, 2006, v. 15, n. 6, p. 1557, doi. 10.1110/ps.062185706

By:

Sasson, Ori;
Kaplan, Noam;
Linial, Michal

Publication type:

Article

Substantial batch effects in TCGA exome sequences undermine pan-cancer analysis of germline variants.

Published in:

2019

By:

Rasnic, Roni;
Brandes, Nadav;
Zuk, Or;
Linial, Michal

Publication type:

journal article

Sharing of antigenic epitopes between synaptophysin and granulophysin.

Published in:

Journal of Cellular Biochemistry, 1992, v. 49, n. 1, p. 59, doi. 10.1002/jcb.240490111

By:

Shalev, Abraham;
Gerrard, Jon M.;
Robertson, Catherine;
Greenberg, Arnold H.;
Linial, Michal

Publication type:

Article