Works by Limbach, Patrick
Results: 64
Chemical Amination/Imination of Carbonothiolated Nucleosides During RNA Hydrolysis.
- Published in:
- Angewandte Chemie, 2021, v. 133, n. 8, p. 4007, doi. 10.1002/ange.202010793
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- Article
Characterization of UVA-Induced Alterations to Transfer RNA Sequences.
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- Biomolecules (2218-273X), 2020, v. 10, n. 11, p. 1527, doi. 10.3390/biom10111527
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- Article
Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168.
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- Biomolecules (2218-273X), 2020, v. 10, n. 7, p. 977, doi. 10.3390/biom10070977
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- Article
Mapping Post-Transcriptional Modifications onto Transfer Ribonucleic Acid Sequences by Liquid Chromatography Tandem Mass Spectrometry.
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- Biomolecules (2218-273X), 2017, v. 7, n. 1, p. 21, doi. 10.3390/biom7010021
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- Article
Going global: the new era of mapping modifications in RNA.
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- Wiley Interdisciplinary Reviews: RNA, 2017, v. 8, n. 1, p. n/a, doi. 10.1002/wrna.1367
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- Article
Removal of 3'-phosphate group by bacterial alkaline phosphatase improves oligonucleotide sequence coverage of RNase digestion products analyzed by collision-induced dissociation mass spectrometry.
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- Rapid Communications in Mass Spectrometry: RCM, 2011, v. 25, n. 23, p. 3609, doi. 10.1002/rcm.5266
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- Article
Matrix-assisted laser desorption/ionization mass spectrometry screening for pseudouridine in mixtures of small RNAs by chemical derivatization, RNase digestion and signature products.
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- Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 23, p. 3727, doi. 10.1002/rcm.3789
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- Article
Characterizing Benzo[a]pyrene Adducts in Transfer RNAs Using Liquid Chromatography Coupled with Tandem Mass Spectrometry (LC-MS/MS).
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- Biomedicines, 2023, v. 11, n. 12, p. 3270, doi. 10.3390/biomedicines11123270
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- Article
Induction based fluidics (IBF) for droplet-based mass spectrometric analysis of oligonucleotides.
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- Journal of Mass Spectrometry, 2015, v. 50, n. 10, p. 1175, doi. 10.1002/jms.3636
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- Article
Identification of RNA sequence isomer by isotope labeling and LC-MS/MS.
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- Journal of Mass Spectrometry, 2014, v. 49, n. 11, p. 1191, doi. 10.1002/jms.3449
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- Article
Minimizing <sup>18</sup>O/<sup>16</sup>O back-exchange in the relative quantification of ribonucleic acids.
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- Journal of Mass Spectrometry, 2009, v. 44, n. 8, p. 1195, doi. 10.1002/jms.1596
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- Article
Application of fractional mass for the identification of peptide-oligonucleotide cross-links by mass spectrometry.
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- Journal of Mass Spectrometry, 2008, v. 43, n. 8, p. 1081, doi. 10.1002/jms.1391
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- Article
Stable isotope labeling for matrix-assisted laser desorption/ionization mass spectrometry and post-source decay analysis of ribonucleic acids.
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- Journal of Mass Spectrometry, 2003, v. 38, n. 8, p. 872, doi. 10.1002/jms.504
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- Article
Effect of sodium dodecyl sulfate micelles on peptide mass fingerprinting by matrix-assisted laser desorption/ionization mass spectrometry.
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- Rapid Communications in Mass Spectrometry: RCM, 2004, v. 18, n. 18, p. 2031, doi. 10.1002/rcm.1588
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- Article
The use of nonpolar matrices for matrix-assisted laser desorption/ionization mass spectrometric analysis of high boiling crude oil fractions.
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- Rapid Communications in Mass Spectrometry: RCM, 2003, v. 17, n. 24, p. 2839, doi. 10.1002/rcm.1275
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- Article
Screening combinatorial libraries for optimal enzyme substrates by mass spectrometry.
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- Rapid Communications in Mass Spectrometry: RCM, 2001, v. 15, n. 14, p. 1166, doi. 10.1002/rcm.360
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- Article
Analysis of single nucleotide polymorphisms by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.
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- Rapid Communications in Mass Spectrometry: RCM, 2000, v. 14, n. 11, p. 950, doi. 10.1002/(SICI)1097-0231(20000615)14:11<950::AID-RCM971>3.0.CO;2-3
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- Article
Polyamine co-matrices for matrix-assisted laser desorption/Ionization mass spectrometry of oligonucleotides.
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- Rapid Communications in Mass Spectrometry: RCM, 1999, v. 13, n. 20, p. 2014, doi. 10.1002/(SICI)1097-0231(19991030)13:20<2014::AID-RCM748>3.0.CO;2-C
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- Article
The Use of a Co-matrix for Improved Analysis of Oligonucleotides by Matrix-assisted Laser Desorption/Ionization Time-of-flight Mass Spectrometry.
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- Rapid Communications in Mass Spectrometry: RCM, 1997, v. 11, n. 6, p. 567, doi. 10.1002/(SICI)1097-0231(199704)11:6<567::AID-RCM917>3.0.CO;2-O
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- Article
Parallel separations using capillary electrophoresis on a multilane microchip with multiplexed laser-induced fluorescence detection.
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- Electrophoresis, 2010, v. 31, n. 16, p. 2796, doi. 10.1002/elps.201000030
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- Article
Comparing polyelectrolyte multilayer-coated PMMA microfluidic devices and glass microchips for electrophoretic separations.
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- Electrophoresis, 2009, v. 30, n. 24, p. 4245, doi. 10.1002/elps.200900403
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- Article
Pytheas: a software package for the automated analysis of RNA sequences and modifications via tandem mass spectrometry.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30057-5
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- Article
The absence of A-to-I editing in the anticodon of plant cytoplasmic tRNA<sup>Arg</sup><sub>ACG</sub> demands a relaxation of the wobble decoding rules.
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- RNA Biology, 2012, v. 9, n. 10, p. 1239, doi. 10.4161/rna.21839
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- Article
Instrumental analysis of RNA modifications.
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- 2021
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- Literature Review
Protein-aptamer binding studies using microchip affinity capillary electrophoresis.
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- Electrophoresis, 2008, v. 29, n. 7, p. 1415, doi. 10.1002/elps.200700777
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- Article
Study of injection bias in a simple hydrodynamic injection in microchip CE.
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- Electrophoresis, 2007, v. 28, n. 10, p. 1564, doi. 10.1002/elps.200600616
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- Article
Frontal analysis in microchip CE: A simple and accurate method for determination of protein-DNA dissociation constant.
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- Electrophoresis, 2007, v. 28, n. 5, p. 837, doi. 10.1002/elps.200600398
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- Article
Halogen-free fire retardant styrene–ethylene–butylene–styrene-based thermoplastic elastomers using synergistic aluminum diethylphosphinate–based combinations.
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- Journal of Fire Sciences, 2015, v. 33, n. 2, p. 157, doi. 10.1177/0734904114565581
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- Article
Identification of the enzymes responsible for m<sup>2,2</sup>G and acp<sup>3</sup>U formation on cytosolic tRNA from insects and plants.
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- PLoS ONE, 2020, v. 15, n. 11, p. 1, doi. 10.1371/journal.pone.0242737
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- Article
Chemical Amination/Imination of Carbonothiolated Nucleosides During RNA Hydrolysis.
- Published in:
- Angewandte Chemie International Edition, 2021, v. 60, n. 8, p. 3961, doi. 10.1002/anie.202010793
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- Article
A disulfide linkage in a CCCH zinc finger motif of an Arabidopsis CPSF30 ortholog
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- FEBS Letters, 2010, v. 584, n. 21, p. 4408, doi. 10.1016/j.febslet.2010.09.043
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- Article
Mapping m 6 A Sites on HIV-1 RNA Using Oligonucleotide LC-MS/MS.
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- Methods & Protocols, 2024, v. 7, n. 1, p. 7, doi. 10.3390/mps7010007
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- Article
Arabidopsis ATP-Dependent, DEAD-Box RNA Helicase Loses Activity upon IsoAsp Formation but Is Restored by PROTEIN ISOASPARTYL METHYLTRANSFERASE.
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- Plant Cell, 2013, v. 25, n. 7, p. 2573, doi. 10.1105/tpc.113.113456
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- Article
Retrograde nuclear transport from the cytoplasm is required for tRNA<sup>Tyr</sup> maturation in T. brucei.
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- RNA Biology, 2018, v. 15, n. 4/5, p. 528, doi. 10.1080/15476286.2017.1377878
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- Article
The t<sup>6</sup>A modification acts as a positive determinant for the anticodon nuclease PrrC, and is distinctively nonessential in Streptococcus mutans.
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- RNA Biology, 2018, v. 15, n. 4/5, p. 508, doi. 10.1080/15476286.2017.1353861
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- Article
The identification and characterization of non-coding and coding RNAs and their modified nucleosides by mass spectrometry.
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- RNA Biology, 2014, v. 11, n. 12, p. 1568, doi. 10.4161/15476286.2014.992280
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- Article
Using spectral matching to interpret LC‐MS/MS data during RNA modification mapping.
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- Journal of Mass Spectrometry, 2019, v. 54, n. 11, p. 906, doi. 10.1002/jms.4456
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- Article
RNA Cleavage Properties of Nucleobase-Specific RNase MC1 and Cusativin Are Determined by the Dinucleotide-Binding Interactions in the Enzyme-Active Site.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 13, p. 7021, doi. 10.3390/ijms23137021
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- Article
Covalent immobilization of proteases and nucleases to poly(methylmethacrylate).
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- Analytical & Bioanalytical Chemistry, 2003, v. 376, n. 3, p. 349, doi. 10.1007/s00216-003-1923-0
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- Article
Indirect mass spectrometric methods for characterizing and sequencing oligonucleotides.
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- Mass Spectrometry Reviews, 1996, v. 15, n. 5, p. 297, doi. 10.1002/(SICI)1098-2787(1996)15:5<297::AID-MAS2>3.0.CO;2-D
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- Article
Essentiality of threonylcarbamoyladenosine (t<sup>6</sup>A), a universal tRNA modification, in bacteria.
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- Molecular Microbiology, 2015, v. 98, n. 6, p. 1199, doi. 10.1111/mmi.13209
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- Article
Systematic identification of tRNAome and its dynamics in L actococcus lactis.
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- Molecular Microbiology, 2014, v. 93, n. 5, p. 944, doi. 10.1111/mmi.12710
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- Article
Novel ribonuclease activity of cusativin from Cucumis sativus for mapping nucleoside modifications in RNA.
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- Analytical & Bioanalytical Chemistry, 2017, v. 409, n. 24, p. 5645, doi. 10.1007/s00216-017-0500-x
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- Article
Using immobilized enzymes to reduce RNase contamination in RNase mapping of transfer RNAs by mass spectrometry.
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- Analytical & Bioanalytical Chemistry, 2012, v. 402, n. 9, p. 2701, doi. 10.1007/s00216-012-5741-0
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- Article
Multiple endonucleases improve MALDI-MS signature digestion product detection of bacterial transfer RNAs.
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- Analytical & Bioanalytical Chemistry, 2009, v. 394, n. 4, p. 1125, doi. 10.1007/s00216-008-2562-2
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- Article
Dynamic 23S rRNA modification ho5C2501 benefits Escherichia coli under oxidative stress.
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- Nucleic Acids Research, 2022, v. 50, n. 1, p. 473, doi. 10.1093/nar/gkab1224
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- Article
Dynamic queuosine changes in tRNA couple nutrient levels to codon choice in Trypanosoma brucei.
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- Nucleic Acids Research, 2021, v. 49, n. 22, p. 12986, doi. 10.1093/nar/gkab1204
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- Article
Ionizing radiation and chemical oxidant exposure impacts on Cryptococcus neoformans transfer RNAs.
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- PLoS ONE, 2022, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0266239
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- Article
Mass spectrometry of RNA: linking the genome to the proteome.
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- Briefings in Functional Genomics & Proteomics, 2006, v. 5, n. 1, p. 87, doi. 10.1093/bfgp/ell012
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- Article
Preferential import of queuosine-modified tRNAs into Trypanosoma brucei mitochondrion is critical for organellar protein synthesis.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. 14, p. 8247, doi. 10.1093/nar/gkab567
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- Article