Works by Limbach, Patrick

Results: 65

Halogen-free fire retardant styrene–ethylene–butylene–styrene-based thermoplastic elastomers using synergistic aluminum diethylphosphinate–based combinations.

Published in:

Journal of Fire Sciences, 2015, v. 33, n. 2, p. 157, doi. 10.1177/0734904114565581

By:

Langfeld, Kirsten;
Wilke, Antje;
Sut, Aleksandra;
Greiser, Sebastian;
Ulmer, Bernhard;
Andrievici, Vlad;
Limbach, Patrick;
Bastian, Martin;
Schartel, Bernhard

Publication type:

Article

Ionizing radiation and chemical oxidant exposure impacts on Cryptococcus neoformans transfer RNAs.

Published in:

PLoS ONE, 2022, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0266239

By:

Kelley, Melissa;
Paulines, Mellie June;
Yoshida, George;
Myers, Ryan;
Jora, Manasses;
Levoy, Joel P.;
Addepalli, Balasubrahmanyam;
Benoit, Joshua B.;
Limbach, Patrick A.

Publication type:

Article

Removal of 3'-phosphate group by bacterial alkaline phosphatase improves oligonucleotide sequence coverage of RNase digestion products analyzed by collision-induced dissociation mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2011, v. 25, n. 23, p. 3609, doi. 10.1002/rcm.5266

By:

Krivos, Kady L.;
Addepalli, Balasubrahmanyam;
Limbach, Patrick A.

Publication type:

Article

Matrix-assisted laser desorption/ionization mass spectrometry screening for pseudouridine in mixtures of small RNAs by chemical derivatization, RNase digestion and signature products.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 23, p. 3727, doi. 10.1002/rcm.3789

By:

Durairaj, Anita;
Limbach, Patrick A.

Publication type:

Article

Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry.

Published in:

Proteomics, 2005, v. 5, n. 18, p. 4818, doi. 10.1002/pmic.200402111

By:

Moo-Jin Suh;
Daisy-Malloy Hamburg;
Steven T. Gregory;
Albert E. Dahlberg;
Patrick A. Limbach

Publication type:

Article

Chemical Amination/Imination of Carbonothiolated Nucleosides During RNA Hydrolysis.

Published in:

Angewandte Chemie, 2021, v. 133, n. 8, p. 4007, doi. 10.1002/ange.202010793

By:

Jora, Manasses;
Borland, Kayla;
Abernathy, Scott;
Zhao, Ruoxia;
Kelley, Melissa;
Kellner, Stefanie;
Addepalli, Balasubrahmanyam;
Limbach, Patrick A.

Publication type:

Article

Mapping m 6 A Sites on HIV-1 RNA Using Oligonucleotide LC-MS/MS.

Published in:

Methods & Protocols, 2024, v. 7, n. 1, p. 7, doi. 10.3390/mps7010007

By:

Baek, Alice;
Rayhan, Asif;
Lee, Ga-Eun;
Golconda, Sarah;
Yu, Hannah;
Kim, Shihyoung;
Limbach, Patrick A.;
Addepalli, Balasubrahmanyam;
Kim, Sanggu

Publication type:

Article

Characterizing Benzo[a]pyrene Adducts in Transfer RNAs Using Liquid Chromatography Coupled with Tandem Mass Spectrometry (LC-MS/MS).

Published in:

Biomedicines, 2023, v. 11, n. 12, p. 3270, doi. 10.3390/biomedicines11123270

By:

Herbert, Cassandra;
Ohrnberger, Corinna L.;
Quinlisk, Ella;
Addepalli, Balasubrahmanyam;
Limbach, Patrick A.

Publication type:

Article

Formation of m2G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7641, doi. 10.1093/nar/gkr475

By:

Menezes, Sheena;
Gaston, Kirk W.;
Krivos, Kady L.;
Apolinario, Ethel E.;
Reich, Norbert O.;
Sowers, Kevin R.;
Limbach, Patrick A.;
Perona, John J.

Publication type:

Article

Functional characterization of the YmcB and YqeV tRNA methylthiotransferases of Bacillus subtilis.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 18, p. 6195, doi. 10.1093/nar/gkq364

By:

Anton, Brian P.;
Russell, Susan P.;
Vertrees, Jason;
Kasif, Simon;
Raleigh, Elisabeth A.;
Limbach, Patrick A.;
Roberts, Richard J.

Publication type:

Article

Relative quantitation of transfer RNAs using liquid chromatography mass spectrometry and signature digestion products.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 16, p. e162, doi. 10.1093/nar/gkq578

By:

Castleberry, Colette M.;
Limbach, Patrick A.

Publication type:

Article

Pytheas: a software package for the automated analysis of RNA sequences and modifications via tandem mass spectrometry.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30057-5

By:

D'Ascenzo, Luigi;
Popova, Anna M.;
Abernathy, Scott;
Sheng, Kai;
Limbach, Patrick A.;
Williamson, James R.

Publication type:

Article

Retrograde nuclear transport from the cytoplasm is required for tRNATyr maturation in T. brucei.

Published in:

RNA Biology, 2018, v. 15, n. 4/5, p. 528, doi. 10.1080/15476286.2017.1377878

By:

Kessler, Alan C.;
Kulkarni, Sneha S.;
Paulines, Mellie J.;
Rubio, Mary Anne T.;
Limbach, Patrick A.;
Paris, Zdeněk;
Alfonzo, Juan D.

Publication type:

Article

The t6A modification acts as a positive determinant for the anticodon nuclease PrrC, and is distinctively nonessential in Streptococcus mutans.

Published in:

RNA Biology, 2018, v. 15, n. 4/5, p. 508, doi. 10.1080/15476286.2017.1353861

By:

Bacusmo, Jo Marie;
Orsini, Silvia S.;
Hu, Jennifer;
DeMott, Michael;
Thiaville, Patrick C.;
Elfarash, Ameer;
Paulines, Mellie June;
Rojas-Benítez, Diego;
Meineke, Birthe;
Deutsch, Chris;
Iwata-Reuyl, Dirk;
Limbach, Patrick A.;
Dedon, Peter C.;
Rice, Kelly C.;
Shuman, Stewart;
Crécy-Lagard, Valérie de

Publication type:

Article

RNA Cleavage Properties of Nucleobase-Specific RNase MC1 and Cusativin Are Determined by the Dinucleotide-Binding Interactions in the Enzyme-Active Site.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 13, p. 7021, doi. 10.3390/ijms23137021

By:

Thakur, Priti;
Atway, Jowad;
Limbach, Patrick A.;
Addepalli, Balasubrahmanyam

Publication type:

Article

Arabidopsis ATP-Dependent, DEAD-Box RNA Helicase Loses Activity upon IsoAsp Formation but Is Restored by PROTEIN ISOASPARTYL METHYLTRANSFERASE.

Published in:

Plant Cell, 2013, v. 25, n. 7, p. 2573, doi. 10.1105/tpc.113.113456

By:

Nayak, Nihar R.;
Putnam, Andrea A.;
Addepalli, Balasubrahmanyam;
Lowenson, Jonathan D.;
Chen, Tingsu;
Jankowsky, Eckhard;
Perry, Sharyn E.;
Dinkins, Randy D.;
Limbach, Patrick A.;
Clarke, Steven G.;
Downie, A. Bruce

Publication type:

Article

Chemical Amination/Imination of Carbonothiolated Nucleosides During RNA Hydrolysis.

Published in:

Angewandte Chemie International Edition, 2021, v. 60, n. 8, p. 3961, doi. 10.1002/anie.202010793

By:

Jora, Manasses;
Borland, Kayla;
Abernathy, Scott;
Zhao, Ruoxia;
Kelley, Melissa;
Kellner, Stefanie;
Addepalli, Balasubrahmanyam;
Limbach, Patrick A.

Publication type:

Article

Effect of sodium dodecyl sulfate micelles on peptide mass fingerprinting by matrix-assisted laser desorption/ionization mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2004, v. 18, n. 18, p. 2031, doi. 10.1002/rcm.1588

By:

Tummala, Rama;
Limbach, Patrick A.

Publication type:

Article

The use of nonpolar matrices for matrix-assisted laser desorption/ionization mass spectrometric analysis of high boiling crude oil fractions.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2003, v. 17, n. 24, p. 2839, doi. 10.1002/rcm.1275

By:

Chad Robins;
Patrick A. Limbach

Publication type:

Article

Screening combinatorial libraries for optimal enzyme substrates by mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2001, v. 15, n. 14, p. 1166, doi. 10.1002/rcm.360

By:

Wang, Peng;
Snavley, Donald F.;
Freitas, Michael A.;
Pei, Dehua;
Limbach, Patrick A.

Publication type:

Article

Analysis of single nucleotide polymorphisms by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2000, v. 14, n. 11, p. 950, doi. 10.1002/(SICI)1097-0231(20000615)14:11<950::AID-RCM971>3.0.CO;2-3

By:

Fei, Zhengdong;
Smith, Lloyd. M.;
Limbach, Patrick

Publication type:

Article

Polyamine co-matrices for matrix-assisted laser desorption/Ionization mass spectrometry of oligonucleotides.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 1999, v. 13, n. 20, p. 2014, doi. 10.1002/(SICI)1097-0231(19991030)13:20<2014::AID-RCM748>3.0.CO;2-C

By:

Vandell, Victor E.;
Limbach, Patrick A.

Publication type:

Article

The Use of a Co-matrix for Improved Analysis of Oligonucleotides by Matrix-assisted Laser Desorption/Ionization Time-of-flight Mass Spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 1997, v. 11, n. 6, p. 567, doi. 10.1002/(SICI)1097-0231(199704)11:6<567::AID-RCM917>3.0.CO;2-O

By:

Simmons, Tracey A.;
Limbach, Patrick A.

Publication type:

Article

Multiple endonucleases improve MALDI-MS signature digestion product detection of bacterial transfer RNAs.

Published in:

Analytical & Bioanalytical Chemistry, 2009, v. 394, n. 4, p. 1125, doi. 10.1007/s00216-008-2562-2

By:

Hossain, Mahmud;
Limbach, Patrick A.

Publication type:

Article

Covalent immobilization of proteases and nucleases to poly(methylmethacrylate).

Published in:

Analytical & Bioanalytical Chemistry, 2003, v. 376, n. 3, p. 349, doi. 10.1007/s00216-003-1923-0

By:

Dominick, Wendy D.;
Berhane, Beniam T.;
Mecomber, Justin S.;
Limbach, Patrick A.

Publication type:

Article

Tyrosine transfer RNA levels and modifications during blood‐feeding and vitellogenesis in the mosquito, Aedes aegypti.

Published in:

Insect Molecular Biology, 2025, v. 34, n. 1, p. 65, doi. 10.1111/imb.12950

By:

Kelley, Melissa;
Holmes, Christopher J.;
Herbert, Cassandra;
Rayhan, Asif;
Joves, Judd;
Uhran, Melissa;
Klaus, Lucas;
Frigard, Ronja;
Singh, Khwahish;
Limbach, Patrick A.;
Addepalli, Balasubrahmanyam;
Benoit, Joshua B.

Publication type:

Article

A disulfide linkage in a CCCH zinc finger motif of an Arabidopsis CPSF30 ortholog

Published in:

FEBS Letters, 2010, v. 584, n. 21, p. 4408, doi. 10.1016/j.febslet.2010.09.043

By:

Addepalli, Balasubrahmanyam;
Limbach, Patrick A.;
Hunt, Arthur G.

Publication type:

Article

Indirect mass spectrometric methods for characterizing and sequencing oligonucleotides.

Published in:

Mass Spectrometry Reviews, 1996, v. 15, n. 5, p. 297, doi. 10.1002/(SICI)1098-2787(1996)15:5<297::AID-MAS2>3.0.CO;2-D

By:

Limbach, Patrick A.

Publication type:

Article

Characterization of UVA-Induced Alterations to Transfer RNA Sequences.

Published in:

Biomolecules (2218-273X), 2020, v. 10, n. 11, p. 1527, doi. 10.3390/biom10111527

By:

Sun, Congliang;
Limbach, Patrick A.;
Addepalli, Balasubrahmanyam

Publication type:

Article

Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168.

Published in:

Biomolecules (2218-273X), 2020, v. 10, n. 7, p. 977, doi. 10.3390/biom10070977

By:

de Crécy-Lagard, Valérie;
Ross, Robert L.;
Jaroch, Marshall;
Marchand, Virginie;
Eisenhart, Christina;
Brégeon, Damien;
Motorin, Yuri;
Limbach, Patrick A.

Publication type:

Article

Mapping Post-Transcriptional Modifications onto Transfer Ribonucleic Acid Sequences by Liquid Chromatography Tandem Mass Spectrometry.

Published in:

Biomolecules (2218-273X), 2017, v. 7, n. 1, p. 21, doi. 10.3390/biom7010021

By:

Ross, Robert L.;
Xiaoyu Cao;
Limbach, Patrick A.

Publication type:

Article

Essentiality of threonylcarbamoyladenosine (t6A), a universal tRNA modification, in bacteria.

Published in:

Molecular Microbiology, 2015, v. 98, n. 6, p. 1199, doi. 10.1111/mmi.13209

By:

Thiaville, Patrick C.;
El Yacoubi, Basma;
Köhrer, Caroline;
Thiaville, Jennifer J.;
Deutsch, Chris;
Iwata‐Reuyl, Dirk;
Bacusmo, Jo Marie;
Armengaud, Jean;
Bessho, Yoshitaka;
Wetzel, Collin;
Cao, Xiaoyu;
Limbach, Patrick A.;
RajBhandary, Uttam L.;
Crécy‐Lagard, Valérie

Publication type:

Article

Systematic identification of tRNAome and its dynamics in L actococcus lactis.

Published in:

Molecular Microbiology, 2014, v. 93, n. 5, p. 944, doi. 10.1111/mmi.12710

By:

Puri, Pranav;
Wetzel, Collin;
Saffert, Paul;
Gaston, Kirk W.;
Russell, Susan P.;
Cordero Varela, Juan A.;
Vlies, Pieter;
Zhang, Gong;
Limbach, Patrick A.;
Ignatova, Zoya;
Poolman, Bert

Publication type:

Article

Using spectral matching to interpret LC‐MS/MS data during RNA modification mapping.

Published in:

Journal of Mass Spectrometry, 2019, v. 54, n. 11, p. 906, doi. 10.1002/jms.4456

By:

Paulines, Mellie June;
Wetzel, Collin;
Limbach, Patrick A.

Publication type:

Article

Induction based fluidics (IBF) for droplet-based mass spectrometric analysis of oligonucleotides.

Published in:

Journal of Mass Spectrometry, 2015, v. 50, n. 10, p. 1175, doi. 10.1002/jms.3636

By:

Ross, Robert L.;
Sauter, Andrew D.;
Limbach, Patrick A.

Publication type:

Article

Identification of RNA sequence isomer by isotope labeling and LC-MS/MS.

Published in:

Journal of Mass Spectrometry, 2014, v. 49, n. 11, p. 1191, doi. 10.1002/jms.3449

By:

Li, Siwei;
Limbach, Patrick A.

Publication type:

Article

Minimizing 18O/16O back-exchange in the relative quantification of ribonucleic acids.

Published in:

Journal of Mass Spectrometry, 2009, v. 44, n. 8, p. 1195, doi. 10.1002/jms.1596

By:

Castleberry, Colette M.;
Lilleness, Kathleen;
Baldauff, Rachel;
Limbach, Patrick A.

Publication type:

Article

Application of fractional mass for the identification of peptide-oligonucleotide cross-links by mass spectrometry.

Published in:

Journal of Mass Spectrometry, 2008, v. 43, n. 8, p. 1081, doi. 10.1002/jms.1391

By:

Pourshahian, Soheil;
Limbach, Patrick A.

Publication type:

Article

Stable isotope labeling for matrix-assisted laser desorption/ionization mass spectrometry and post-source decay analysis of ribonucleic acids.

Published in:

Journal of Mass Spectrometry, 2003, v. 38, n. 8, p. 872, doi. 10.1002/jms.504

By:

Berhane, Beniam T.;
Limbach, Patrick A.

Publication type:

Article

Mass spectrometry of RNA: linking the genome to the proteome.

Published in:

Briefings in Functional Genomics & Proteomics, 2006, v. 5, n. 1, p. 87, doi. 10.1093/bfgp/ell012

By:

Zhaojing Meng;
Limbach, Patrick A.

Publication type:

Article

Limited proteolysis analysis of the ribosome is affected by subunit association.

Published in:

Biopolymers, 2009, v. 91, n. 6, p. 410, doi. 10.1002/bip.21161

By:

Hamburg, Daisy-Malloy;
Suh, Moo-Jin;
Limbach, Patrick A.;
Fabris, Dan

Publication type:

Article

Structural basis for aminoacylation of cellular modified tRNALys3 by human lysyl-tRNA synthetase.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf114

By:

Devarkar, Swapnil C;
Budding, Christina R;
Pathirage, Chathuri;
Kavoor, Arundhati;
Herbert, Cassandra;
Limbach, Patrick A;
Musier-Forsyth, Karin;
Xiong, Yong

Publication type:

Article

Dynamic 23S rRNA modification ho5C2501 benefits Escherichia coli under oxidative stress.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 473, doi. 10.1093/nar/gkab1224

By:

Fasnacht, Michel;
Gallo, Stefano;
Sharma, Puneet;
Himmelstoß, Maximilian;
Limbach, Patrick A;
Willi, Jessica;
Polacek, Norbert

Publication type:

Article

Dynamic queuosine changes in tRNA couple nutrient levels to codon choice in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 22, p. 12986, doi. 10.1093/nar/gkab1204

By:

Dixit, Sameer;
Kessler, Alan C;
Henderson, Jeremy;
Pan, Xiaobei;
Zhao, Ruoxia;
D'Almeida, Gabriel Silveira;
Kulkarni, Sneha;
Rubio, Mary Anne T;
Hegedűsová, Eva;
Ross, Robert L;
Limbach, Patrick A;
Green, Brian D;
Paris, Zdeněk;
Alfonzo, Juan D

Publication type:

Article

Preferential import of queuosine-modified tRNAs into Trypanosoma brucei mitochondrion is critical for organellar protein synthesis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 14, p. 8247, doi. 10.1093/nar/gkab567

By:

Kulkarni, Sneha;
Rubio, Mary Anne T;
Hegedűsová, Eva;
Ross, Robert L;
Limbach, Patrick A;
Alfonzo, Juan D;
Paris, Zdeněk

Publication type:

Article

Evolutionary insights into Trm112-methyltransferase holoenzymes involved in translation between archaea and eukaryotes.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 16, p. 8483, doi. 10.1093/nar/gky638

By:

van Tran, Nhan;
Muller, Leslie;
Ross, Robert L;
Lestini, Roxane;
Létoquart, Juliette;
Ulryck, Nathalie;
Limbach, Patrick A;
de Crécy-Lagard, Valérie;
Cianférani, Sarah;
Graille, Marc

Publication type:

Article

A metastable rRNA junction essential for bacterial 30S biogenesis.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 10, p. 5182, doi. 10.1093/nar/gky120

By:

Sharma, Indra Mani;
Rappé, Mollie C;
Addepalli, Balasubrahmanyam;
Grabow, Wade W;
Zhuang, Zhuoyun;
Abeysirigunawardena, Sanjaya C;
Limbach, Patrick A;
Jaeger, Luc;
Woodson, Sarah A

Publication type:

Article

Selective terminal methylation of a tRNA wobble base.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 7, p. 1, doi. 10.1093/nar/gky013

By:

Masuda, Isao;
Takase, Ryuichi;
Matsubara, Ryuma;
Paulines, Mellie June;
Gamper, Howard;
Limbach, Patrick A;
Hou, Ya-Ming

Publication type:

Article

MODOMICS: a database of RNA modification pathways. 2017 update.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D303, doi. 10.1093/nar/gkx1030

By:

Boccaletto, Pietro;
Machnicka, Magdalena A;
Purta, Elzbieta;
Piątkowski, Paweł;
Bagiński, Błażej;
Wirecki, Tomasz K;
de Crécy-Lagard, Valérie;
Ross, Robert;
Limbach, Patrick A;
Kotter, Annika

Publication type:

Article

RoboOligo: software for mass spectrometry data to support manual and de novo sequencing of post-transcriptionally modified ribonucleic acids.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 1, doi. 10.1093/nar/gkv145

By:

Sample, Paul J.;
Gaston, Kirk W.;
Alfonzo, Juan D.;
Limbach, Patrick A.

Publication type:

Article