Works by Lill, Jennie

Results: 44

Editorial: Revolutionizing immunological disease understanding through single cell multi-omics technologies.

Published in:

2025

By:

Zhu, Ying;
Anania, Veronica G.;
Lill, Jennie R.;
Modrusan, Zora

Publication type:

Editorial

IgSimulator: a versatile immunosequencing simulator.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3213, doi. 10.1093/bioinformatics/btv326

By:

Safonova, Yana;
Lapidus, Alla;
Lill, Jennie

Publication type:

Article

IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. i53, doi. 10.1093/bioinformatics/btv238

By:

Safonova, Yana;
Bonissone, Stefano;
Kurpilyansky, Eugene;
Starostina, Ekaterina;
Lapidus, Alla;
Stinson, Jeremy;
DePalatis, Laura;
Sandoval, Wendy;
Lill, Jennie;
Pevzner, Pavel A.

Publication type:

Article

Tumor suppressor BAP1 is essential for thymic development and proliferative responses of T lymphocytes.

Published in:

Science Immunology, 2018, v. 3, n. 22, p. 1, doi. 10.1126/sciimmunol.aal1953

By:

Arenzana, Teresita L.;
Lianoglou, Steve;
Seki, Akiko;
Eidenschenk, Celine;
Cheung, Tommy;
Seshasayee, Dhaya;
Hagenbeek, Thijs;
Sambandam, Arivazhagan;
Noubade, Rajkumar;
Peng, Ivan;
Lesch, Justin;
DeVoss, Jason;
Wu, Xiumin;
Lee, Wyne P.;
Caplazi, Patrick;
Webster, Joshua;
Liu, Jinfeng;
Pham, Victoria C.;
Arnott, David;
Lill, Jennie R.

Publication type:

Article

A Novel Peptide-Based SILAC Method to Identify the Posttranslational Modifications Provides Evidence for Unconventional Ubiquitination in the ER-Associated Degradation Pathway.

Published in:

International Journal of Proteomics, 2013, p. 1, doi. 10.1155/2013/857918

By:

Anania, Veronica G.;
Bustos, Daisy J.;
Lill, Jennie R.;
Kirkpatrick, Donald S.;
Coscoy, Laurent

Publication type:

Article

Targeted mass spectrometric strategy for global mapping of ubiquitination on proteins.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2007, v. 21, n. 20, p. 3357, doi. 10.1002/rcm.3227

By:

Mollah, Sahana;
Wertz, Ingrid E.;
Phung, Qui;
Arnott, David;
Dixit, Vishva M.;
Lill, Jennie R.

Publication type:

Article

Caspase-11 cleaves gasdermin D for non-canonical inflammasome signalling.

Published in:

Nature, 2015, v. 526, n. 7575, p. 666, doi. 10.1038/nature15541

By:

Kayagaki, Nobuhiko;
Stowe, Irma B.;
Lee, Bettina L.;
O'Rourke, Karen;
Anderson, Keith;
Warming, Søren;
Cuellar, Trinna;
Haley, Benjamin;
Roose-Girma, Merone;
Phung, Qui T.;
Liu, Peter S.;
Lill, Jennie R.;
Li, Hong;
Wu, Jiansheng;
Kummerfeld, Sarah;
Zhang, Juan;
Lee, Wyne P.;
Snipas, Scott J.;
Salvesen, Guy S.;
Morris, Lucy X.

Publication type:

Article

Antibody toolkit reveals N-terminally ubiquitinated substrates of UBE2W.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24669-6

By:

Davies, Christopher W.;
Vidal, Simon E.;
Phu, Lilian;
Sudhamsu, Jawahar;
Hinkle, Trent B.;
Chan Rosenberg, Scott;
Schumacher, Frances-Rose;
Zeng, Yi Jimmy;
Schwerdtfeger, Carsten;
Peterson, Andrew S.;
Lill, Jennie R.;
Rose, Christopher M.;
Shaw, Andrey S.;
Wertz, Ingrid E.;
Kirkpatrick, Donald S.;
Koerber, James T.

Publication type:

Article

Response to Comment on "SUMO deconjugation is required for arsenic-triggered ubiquitylation of PML".

Published in:

Science Signaling, 2016, v. 9, n. 440, p. 1, doi. 10.1126/scisignal.aad9777

By:

Fasci, Domenico;
Anania, Veronica;
Lill, Jennie;
Salvesen, Guy

Publication type:

Article

SUMO deconjugation is required for arsenic-triggered ubiquitylation of PML.

Published in:

Science Signaling, 2015, v. 8, n. 380, p. 1, doi. 10.1126/scisignal.aaa3929

By:

Salvesen, Guy S.;
Fasci, Domenico;
Anania, Veronica G.;
Lill, Jennie R.

Publication type:

Article

Transcription Factor ATF4 Induces NLRP1 Inflammasome Expression during Endoplasmic Reticulum Stress.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0130635

By:

D’Osualdo, Andrea;
Anania, Veronica G.;
Yu, Kebing;
Lill, Jennie R.;
Kaufman, Randal J.;
Matsuzawa, Shu-ichi;
Reed, John C.

Publication type:

Article

Evolutionary Divergence in the Catalytic Activity of the CAM-1, ROR1 and ROR2 Kinase Domains.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102695

By:

Bainbridge, Travis W.;
DeAlmeida, Venita I.;
Izrael-Tomasevic, Anita;
Chalouni, Cécile;
Pan, Borlan;
Goldsmith, Joshua;
Schoen, Alia P.;
Quiñones, Gabriel A.;
Kelly, Ryan;
Lill, Jennie R.;
Sandoval, Wendy;
Costa, Mike;
Polakis, Paul;
Arnott, David;
Rubinfeld, Bonnee;
Ernst, James A.

Publication type:

Article

Ubiquitin Ligase RNF146 Regulates Tankyrase and Axin to Promote Wnt Signaling.

Published in:

PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0022595

By:

Callow, Marinella G.;
Tran, Hoanh;
Phu, Lilian;
Lau, Ted;
Lee, James;
Sandoval, Wendy N.;
Liu, Peter S.;
Bheddah, Sheila;
Tao, Janet;
Lill, Jennie R.;
Hongo, Jo-Anne;
Davis, David;
Kirkpatrick, Donald S.;
Polakis, Paul;
Costa, Mike

Publication type:

Article

Phosphoproteomic Analysis Implicates the mTORC2-FoxO1 Axis in VEGF Signaling and Feedback Activation of Receptor Tyrosine Kinases.

Published in:

Science Signaling, 2013, v. 6, n. 271, p. 1, doi. 10.1126/scisignal.2003572

By:

Guanglei Zhuang;
Kebing Yu;
Zhaoshi Jiang;
Alicia Chung;
Jenny Yao;
Connie Ha;
Toy, Karen;
Soriano, Robert;
Haley, Benjamin;
Blackwood, Elizabeth;
Sampath, Deepak;
Bais, Carlos;
Lill, Jennie R.;
Ferrara, Napoleone

Publication type:

Article

Automated de novo protein sequencing of monoclonal antibodies.

Published in:

Nature Biotechnology, 2008, v. 26, n. 12, p. 1336, doi. 10.1038/nbt1208-1336

By:

Bandeira, Nuno;
Pham, Victoria;
Pevzner, Pavel;
Arnott, David;
Lill, Jennie R

Publication type:

Article

HSP105 Recruits Protein Phosphatase 2A To Dephosphorylate β-Catenin.

Published in:

Molecular & Cellular Biology, 2015, v. 35, n. 8, p. 1390, doi. 10.1128/MCB.01307-14

By:

Yu, Nancy;
Kakunda, Michael;
Pham, Victoria;
Lill, Jennie R.;
Du, Pan;
Wongchenko, Matthew;
Yibing Yan;
Firestein, Ron;
XiaoDong Huang

Publication type:

Article

The Double-Histone-Acetyltransferase Complex ATAC Is Essential for Mammalian Development.

Published in:

Molecular & Cellular Biology, 2009, v. 29, n. 5, p. 1176, doi. 10.1128/MCB.01599-08

By:

Guelman, Sebastián;
Kozuka, Kenji;
Yifan Mao;
Pham, Victoria;
Solloway, Mark J.;
Wang, John;
Jiansheng Wu;
Lill, Jennie R.;
Jiping Zha

Publication type:

Article

Advancing precision cancer immunotherapy drug development, administration, and response prediction with AI-enabled Raman spectroscopy.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2024.1520860

By:

Chadokiya, Jay;
Chang, Kai;
Sharma, Saurabh;
Hu, Jack;
Lill, Jennie R.;
Dionne, Jennifer;
Kirane, Amanda

Publication type:

Article

Proteomic tools for the characterization of cell death mechanisms in drug discovery.

Published in:

Proteomics - Clinical Applications, 2015, v. 9, n. 7/8, p. 671, doi. 10.1002/prca.201400151

By:

Anania, Veronica G.;
Lill, Jennie R.

Publication type:

Article

Resurrection of a clinical antibody: Template proteogenomic de novo proteomic sequencing and reverse engineering of an anti-lymphotoxin-α antibody.

Published in:

Proteomics - Clinical Applications, 2011, v. 5, n. 7/8, p. 473, doi. 10.1002/prca.201190049

By:

Castellana, Natalie E.;
McCutcheon, Krista;
Pham, Victoria C.;
Harden, Kristin;
Nguyen, Allen;
Young, Judy;
Adams, Camellia;
Schroeder, Kurt;
Arnott, David;
Bafna, Vineet;
Grogan, Jane L.;
Lill, Jennie R.

Publication type:

Article

Rapid on-membrane proteolytic cleavage for Edman sequencing and mass spectrometric identification of proteins.

Published in:

Electrophoresis, 2005, v. 26, n. 22, p. 4243, doi. 10.1002/elps.200500206

By:

Victoria C. Pham;
William J. Henzel;
Jennie R. Lill

Publication type:

Article

An Integrated Genomic, Proteomic, and Immunopeptidomic Approach to Discover Treatment-Induced Neoantigens.

Published in:

Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.662443

By:

Olsson, Niclas;
Heberling, Marlene L.;
Zhang, Lichao;
Jhunjhunwala, Suchit;
Phung, Qui T.;
Lin, Sarah;
Anania, Veronica G.;
Lill, Jennie R.;
Elias, Joshua E.

Publication type:

Article

Towards designing improved cancer immunotherapy targets with a peptide-MHC-I presentation model, HLApollo.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-54887-7

By:

Thrift, William John;
Lounsbury, Nicolas W.;
Broadwell, Quade;
Heidersbach, Amy;
Freund, Emily;
Abdolazimi, Yassan;
Phung, Qui T.;
Chen, Jieming;
Capietto, Aude-Hélène;
Tong, Ann-Jay;
Rose, Christopher M.;
Blanchette, Craig;
Lill, Jennie R.;
Haley, Benjamin;
Delamarre, Lélia;
Bourgon, Richard;
Liu, Kai;
Jhunjhunwala, Suchit

Publication type:

Article

Survey Outcome on Immunogenicity Risk Assessment Tools for Biotherapeutics: an Insight into Consensus on Methods, Application, and Utility in Drug Development.

Published in:

AAPS Journal, 2023, v. 25, n. 4, p. 1, doi. 10.1208/s12248-023-00820-7

By:

Gokemeijer, Jochem;
Wen, Yi;
Jawa, Vibha;
Mitra-Kaushik, Shibani;
Chung, Shan;
Goggins, Alan;
Kumar, Seema;
Lamberth, Kasper;
Liao, Karen;
Lill, Jennie;
Phung, Qui;
Walsh, Robin;
Roberts, Brian J.;
Swanson, Michael;
Singh, Inderpal;
Tourdot, Sophie;
Kroenke, Mark A.;
Rup, Bonita;
Goletz, Theresa J.;
Gupta, Swati

Publication type:

Article

Minimal Information About an Immuno‐Peptidomics Experiment (MIAIPE).

Published in:

Proteomics, 2018, v. 18, n. 12, p. 1, doi. 10.1002/pmic.201800110

By:

Lill, Jennie R.;
van Veelen, Peter A.;
Tenzer, Stefan;
Admon, Arie;
Caron, Etienne;
Elias, Joshua E.;
Heck, Albert J. R.;
Marcilla, Miguel;
Marino, Fabio;
Müller, Markus;
Peters, Bjoern;
Purcell, Anthony;
Sette, Alessandro;
Sturm, Theo;
Ternette, Nicola;
Vizcaíno, Juan Antonio;
Bassani‐Sternberg, Michal

Publication type:

Article

Building proteomic tool boxes to monitor MHC class I and class II peptides.

Published in:

Proteomics, 2017, v. 17, n. 1/2, p. n/a, doi. 10.1002/pmic.201600061

By:

Schumacher, Frances‐Rose;
Delamarre, Lélia;
Jhunjhunwala, Suchit;
Modrusan, Zora;
Phung, Qui T.;
Elias, Joshua E.;
Lill, Jennie R.

Publication type:

Article

Front Cover: Building proteomic tool boxes to monitor MHC class I and class II peptide.

Published in:

Proteomics, 2017, v. 17, n. 1/2, p. n/a, doi. 10.1002/pmic.201770010

By:

Schumacher, Frances‐Rose;
Delamarre, Lélia;
Jhunjhunwala, Suchit;
Modrusan, Zora;
Phung, Qui T.;
Elias, Joshua E.;
Lill, Jennie R.

Publication type:

Article

Resurrection of a clinical antibody: Template proteogenomic de novo proteomic sequencing and reverse engineering of an anti-lymphotoxin-α antibody.

Published in:

Proteomics, 2011, v. 11, n. 3, p. 395, doi. 10.1002/pmic.201000487

By:

Castellana, Natalie E.;
McCutcheon, Krista;
Pham, Victoria C.;
Harden, Kristin;
Nguyen, Allen;
Young, Judy;
Adams, Camellia;
Schroeder, Kurt;
Arnott, David;
Bafna, Vineet;
Grogan, Jane L.;
Lill, Jennie R.

Publication type:

Article

Interferon regulatory factor 4 mediates nonenzymatic IRE1 dependency in multiple myeloma cells.

Published in:

PLoS Biology, 2025, v. 23, n. 4, p. 1, doi. 10.1371/journal.pbio.3003096

By:

Oikonomidi, Ioanna;
Kameswaran, Vasumathi;
Pham, Victoria C.;
Zuazo-Gaztelu, Iratxe;
Gutgesell, Lauren M.;
Marsters, Scot;
Daniel, Bence;
Lill, Jennie R.;
Modrusan, Zora;
Ashkenazi, Avi

Publication type:

Article

Deubiquitinase USP9X stabilizes MCL1 and promotes tumour cell survival.

Published in:

Nature, 2010, v. 463, n. 7277, p. 103, doi. 10.1038/nature08646

By:

Schwickart, Martin;
XiaoDong Huang;
Lill, Jennie R.;
Jinfeng Liu;
Ferrando, Ronald;
French, Dorothy M.;
Maecker, Heather;
O'Rourke, Karen;
Bazan, Fernando;
Eastham-Anderson, Jeffrey;
Peng Yue;
Dornan, David;
Huang, David C. S.;
Dixit, Vishva M.

Publication type:

Article

The neutrophil protein CD177 is a novel PDPN receptor that regulates human cancer-associated fibroblast physiology.

Published in:

PLoS ONE, 2021, v. 16, n. 12, p. 1, doi. 10.1371/journal.pone.0260800

By:

Astarita, Jillian L.;
Keerthivasan, Shilpa;
Husain, Bushra;
Şenbabaoğlu, Yasin;
Verschueren, Erik;
Gierke, Sarah;
Pham, Victoria C.;
Peterson, Sean M.;
Chalouni, Cecile;
Pierce, Andrew A.;
Lill, Jennie R.;
Gonzalez, Lino C.;
Martinez-Martin, Nadia;
Turley, Shannon J.

Publication type:

Article

Microwave-assisted proteomics.

Published in:

Mass Spectrometry Reviews, 2007, v. 26, n. 5, p. 657, doi. 10.1002/mas.20140

By:

Lill, Jennie R.;
Ingle, Elizabeth S.;
Liu, Peter S.;
Pham, Victoria;
Sandoval, Wendy N.

Publication type:

Article

Proteomic tools for quantitation by mass spectrometry.

Published in:

Mass Spectrometry Reviews, 2003, v. 22, n. 3, p. 182, doi. 10.1002/mas.10048

By:

Lill, Jennie

Publication type:

Article

Deubiquitinase DUBA is a post-translational brake on interleukin-17 production in T cells.

Published in:

Nature, 2015, v. 518, n. 7539, p. 417, doi. 10.1038/nature13979

By:

Rutz, Sascha;
Kayagaki, Nobuhiko;
Phung, Qui T.;
Eidenschenk, Celine;
Noubade, Rajkumar;
Wang, Xiaoting;
Lesch, Justin;
Lu, Rongze;
Newton, Kim;
Huang, Oscar W.;
Cochran, Andrea G.;
Vasser, Mark;
Fauber, Benjamin P.;
DeVoss, Jason;
Webster, Joshua;
Diehl, Lauri;
Modrusan, Zora;
Kirkpatrick, Donald S.;
Lill, Jennie R.;
Ouyang, Wenjun

Publication type:

Article

Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing.

Published in:

Nature, 2014, v. 515, n. 7528, p. 572, doi. 10.1038/nature14001

By:

Yadav, Mahesh;
Jhunjhunwala, Suchit;
Phung, Qui T.;
Lupardus, Patrick;
Tanguay, Joshua;
Bumbaca, Stephanie;
Franci, Christian;
Cheung, Tommy K.;
Modrusan, Zora;
Mellman, Ira;
Lill, Jennie R.;
Delamarre, Lélia;
Fritsche, Jens;
Weinschenk, Toni

Publication type:

Article

Endosomes are specialized platforms for bacterial sensing and NOD2 signalling.

Published in:

Nature, 2014, v. 509, n. 7499, p. 240, doi. 10.1038/nature13133

By:

Nakamura, Norihiro;
Lill, Jennie R.;
Phung, Qui;
Jiang, Zhaoshi;
Bakalarski, Corey;
de Mazière, Ann;
Klumperman, Judith;
Schlatter, Megan;
Delamarre, Lélia;
Mellman, Ira

Publication type:

Article

Sensitivity to antitubulin chemotherapeutics is regulated by MCL1 and FBW7.

Published in:

2011

By:

Wertz, Ingrid E.;
Kusam, Saritha;
Lam, Cynthia;
Okamoto, Toru;
Sandoval, Wendy;
Anderson, Daniel J.;
Helgason, Elizabeth;
Ernst, James A.;
Eby, Mike;
Liu, Jinfeng;
Belmont, Lisa D.;
Kaminker, Joshua S.;
O'Rourke, Karen M.;
Pujara, Kanan;
Kohli, Pawan Bir;
Johnson, Adam R.;
Chiu, Mark L.;
Lill, Jennie R.;
Jackson, Peter K.;
Fairbrother, Wayne J.

Publication type:

Correction Notice

Sensitivity to antitubulin chemotherapeutics is regulated by MCL1 and FBW7.

Published in:

Nature, 2011, v. 471, n. 7336, p. 110, doi. 10.1038/nature09779

By:

Wertz, Ingrid E.;
Kusam, Saritha;
Lam, Cynthia;
Okamoto, Toru;
Sandoval, Wendy;
Anderson, Daniel J.;
Helgason, Elizabeth;
Ernst, James A.;
Eby, Mike;
Jinfeng Liu;
Belmont, Lisa D.;
Kaminker, Josh S.;
O'Rourke, Karen M.;
Pujara, Kanan;
Kohli, Pawan Bir;
Johnson, Adam R.;
Chiu, Mark L.;
Lill, Jennie R.;
Jackson, Peter K.;
Fairbrother, Wayne J.

Publication type:

Article

Neutrophil serine protease 4 is required for mast cell-dependent vascular leakage.

Published in:

Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-01407-0

By:

AhYoung, Andrew P.;
Eckard, Sterling C.;
Gogineni, Alvin;
Xi, Hongkang;
Lin, S. Jack;
Gerhardy, Stefan;
Cox, Christian;
Phung, Qui T.;
Hackney, Jason A.;
Katakam, Anand Kumar;
Reichelt, Mike;
Caplazi, Patrick;
Manzanillo, Paolo;
Zhang, Juan;
Roose-Girma, Merone;
Tam, Lucinda W.;
Newman, Robert J.;
Murthy, Aditya;
Weimer, Robby M.;
Lill, Jennie R.

Publication type:

Article

Editorial: Immunopeptidomic Approaches for the Identification of Tumor (neo)Antigens.

Published in:

Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.923776

By:

Lill, Jennie R.;
Bassani-Sternberg, Michal

Publication type:

Article

Comparative Analysis of Techniques to Purify Plasma Membrane Proteins.

Published in:

Journal of Biomolecular Techniques, 2010, v. 21, n. 3, p. 108

By:

Weekes, Michael P.;
Antrobus, Robin;
R. Lill, Jennie;
Duncan, Lidia M.;
Hör, Simon;
Lehner, Paul J.

Publication type:

Article

Rapid, semi-automated protein terminal characterization using ISDetect.

Published in:

Nature Biotechnology, 2016, v. 34, n. 8, p. 811, doi. 10.1038/nbt.3621

By:

Bakalarski, Corey E;
Gan, Yutian;
Wertz, Ingrid;
Lill, Jennie R;
Sandoval, Wendy

Publication type:

Article

Proteomics in the pharmaceutical and biotechnology industry: a look to the next decade.

Published in:

Expert Review of Proteomics, 2021, v. 18, n. 7, p. 503, doi. 10.1080/14789450.2021.1962300

By:

Lill, Jennie R.;
Mathews, William R.;
Rose, Christopher M.;
Schirle, Markus

Publication type:

Article

MAPPs for the identification of immunogenic hotspots of biotherapeutics; an overview of the technology and its application to the biopharmaceutical arena.

Published in:

Expert Review of Proteomics, 2018, v. 15, n. 9, p. 733, doi. 10.1080/14789450.2018.1521279

By:

Quarmby, Valerie;
Phung, Qui T;
Lill, Jennie R

Publication type:

Article