Works by Liao, James

Results: 171

Isobutanol production as an alternative metabolic sink to rescue the growth deficiency of the glycogen mutant of Synechococcus elongatus PCC 7942.

Published in:

Photosynthesis Research, 2014, v. 120, n. 3, p. 301, doi. 10.1007/s11120-014-9987-6

By:

Li, Xiaoqian;
Shen, Claire;
Liao, James

Publication type:

Article

Deep learning-assisted colonoscopy images for prediction of mismatch repair deficiency in colorectal cancer.

Published in:

Surgical Endoscopy & Other Interventional Techniques, 2025, v. 39, n. 2, p. 859, doi. 10.1007/s00464-024-11426-1

By:

Cai, Yue;
Chen, Xijie;
Chen, Junguo;
Liao, James;
Han, Ming;
Lin, Dezheng;
Hong, Xiaoling;
Hu, Huabin;
Hu, Jiancong

Publication type:

Article

Metabolomics-Driven Identification of the Rate-Limiting Steps in 1-Propanol Production.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.871624

By:

Ohtake, Toshiyuki;
Kawase, Naoki;
Pontrelli, Sammy;
Nitta, Katsuaki;
Laviña, Walter A.;
Shen, Claire R.;
Putri, Sastia P.;
Liao, James C.;
Fukusaki, Eiichiro

Publication type:

Article

Co-expression pattern from DNA microarray experiments as a tool for operon prediction.

Published in:

Nucleic Acids Research, 2002, v. 30, n. 13, p. 2886, doi. 10.1093/nar/gkf388

By:

Sabatti, Chiara;
Rohlin, Lars;
Oh, Min-Kyu;
Liao, James C.

Publication type:

Article

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects.

Published in:

Nucleic Acids Research, 2001, v. 29, n. 12, p. 2549, doi. 10.1093/nar/29.12.2549

By:

Tseng, George C.;
Oh, Min-Kyu;
Rohlin, Lars;
Liao, James C.;
Wong, Wing Hung

Publication type:

Article

Obesity Increases Vascular Senescence and Susceptibility to Ischemic Injury Through Chronic Activation of Akt and mTOR.

Published in:

Science Signaling, 2009, v. 2, n. 62, p. 1, doi. 10.1126/scisignal.2000143

By:

Chao-Yung Wang;
Hyung-Hwan Kim;
Yukio Hiroi;
Naoki Sawada;
Salomone, Salvatore;
Benjamin, Laura E.;
Walsh, Kenneth;
Moskowitz, Michael A.;
Liao, James K.

Publication type:

Article

Rac1 Is a Critical Mediator of Endothelium-Derived Neurotrophic Activity.

Published in:

Science Signaling, 2009, v. 2, n. 61, p. 1, doi. 10.1126/scisignal.2000162

By:

Naoki Sawada;
Hyung-Hwan Kim;
Moskowitz, Michael A.;
Liao, James K.

Publication type:

Article

Identification of ROCK1 as an Upstream Activator of the JIP-3 to JNK Signaling Axis in Response to UVB Damage.

Published in:

Science Signaling, 2008, v. 1, n. 47, p. 1, doi. 10.1126/scisignal.1161938

By:

Ongusaha, Pat P.;
Qi, Hank H.;
Raj, Lakshmi;
Kim, Young-Bum;
Aaronson, Stuart A.;
Davis, Roger J.;
Yang Shi;
Liao, James K.;
Lee, Sam W.

Publication type:

Article

Iterative cycle of widely targeted metabolic profiling for the improvement of 1-butanol titer and productivity in <italic>Synechococcus elongatus</italic>.

Published in:

Biotechnology for Biofuels, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13068-018-1187-8

By:

Fathima, Artnice Mega;
Chuang, Derrick;
Laviña, Walter Alvarez;
Liao, James;
Putri, Sastia Prama;
Fukusaki, Eiichiro

Publication type:

Article

Metabolic ensemble modeling for strain engineers.

Published in:

Biotechnology Journal, 2012, v. 7, n. 3, p. 343, doi. 10.1002/biot.201100186

By:

Tan, Yikun;
Liao, James C.

Publication type:

Article

Bioengineering of microorganisms for C3 to C5 alcohols production.

Published in:

Biotechnology Journal, 2010, v. 5, n. 12, p. 1297, doi. 10.1002/biot.201000276

By:

Mainguet, Samuel E.;
Liao, James C.

Publication type:

Article

Mitohormesis: another pleiotropic effect of statins?

Published in:

European Heart Journal, 2012, v. 33, n. 11, p. 1299, doi. 10.1093/eurheartj/ehr287

By:

Liao, James K.

Publication type:

Article

Engineering a cyanobacterium as the catalyst for the photosynthetic conversion of CO² to 1,2-propanediol.

Published in:

Microbial Cell Factories, 2013, v. 12, n. 1, p. 1, doi. 10.1186/1475-2859-12-4

By:

Li, Han;
Liao, James C.

Publication type:

Article

Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli.

Published in:

Molecular Systems Biology, 2010, v. 6, n. 1, p. 449, doi. 10.1038/msb.2010.98

By:

Atsumi, Shota;
Wu, Tung‐Yun;
Machado, Iara M P;
Huang, Wei‐Chih;
Chen, Pao‐Yang;
Pellegrini, Matteo;
Liao, James C

Publication type:

Article

An integrated network approach identifies the isobutanol response network of Escherichia coli.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 277, doi. 10.1038/msb.2009.34

By:

Brynildsen, Mark P;
Liao, James C

Publication type:

Article

Single-cell zeroth-order protein degradation enhances the robustness of synthetic oscillator.

Published in:

Molecular Systems Biology, 2007, v. 3, n. 1, p. 130, doi. 10.1038/msb4100172

By:

Wong, Wilson W;
Tsai, Tony Y;
Liao, James C

Publication type:

Article

A numerical study of fish adaption behaviors in complex environments with a deep reinforcement learning and immersed boundary–lattice Boltzmann method.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-81124-8

By:

Zhu, Yi;
Tian, Fang-Bao;
Young, John;
Liao, James C.;
Lai, Joseph C. S.

Publication type:

Article

Oxidized Low-Density Lipoprotein Inhibits Nitric Oxide-Mediated Coronary Arteriolar Dilation by Up-regulating Endothelial Arginase I.

Published in:

Microcirculation, 2011, v. 18, n. 1, p. 36, doi. 10.1111/j.1549-8719.2010.00066.x

By:

WANG, WEI;
HEIN, TRAVIS W.;
ZHANG, CUIHUA;
ZAWIEJA, DAVID C.;
LIAO, JAMES C.;
KUO, LIH

Publication type:

Article

A modified serine cycle in Escherichia coli coverts methanol and CO2 to two-carbon compounds.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06496-4

By:

Yu, Hong;
Liao, James C.

Publication type:

Article

Augmenting the Calvin–Benson–Bassham cycle by a synthetic malyl-CoA-glycerate carbon fixation pathway.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-04417-z

By:

Hong Yu;
Xiaoqian Li;
Fabienne Duchoud;
Chuang, Derrick S.;
Liao, James C.

Publication type:

Article

Endothelial oestrogen–myocardial cyclic guanosine monophosphate axis critically determines angiogenesis and cardiac performance during pressure overload.

Published in:

Cardiovascular Research, 2024, v. 120, n. 15, p. 1884, doi. 10.1093/cvr/cvae202

By:

Fukuma, Nobuaki;
Tokiwa, Hiroyuki;
Numata, Genri;
Ueda, Kazutaka;
Liu, Pang-Yen;
Tajima, Miyu;
Otsu, Yu;
Kariya, Taro;
Hiroi, Yukio;
Liao, James K;
Komuro, Issei;
Takimoto, Eiki

Publication type:

Article

Emerging views of statin pleiotropy and cholesterol lowering.

Published in:

Cardiovascular Research, 2022, v. 118, n. 2, p. 413, doi. 10.1093/cvr/cvab032

By:

Yu, Dongbo;
Liao, James K

Publication type:

Article

Fingolimod provides long-term protection in rodent models of cerebral ischemia.

Published in:

Annals of Neurology, 2011, v. 69, n. 1, p. 119, doi. 10.1002/ana.22186

By:

Ying Wei;
Yemisci, Muge;
Hyung-HwanKim;
Lai Ming Yung;
Hwa Kyoung Shin;
Seo-Kyoung Hwang;
Shuzhen Guo;
Tao Qin;
Alsharif, Nafiseh;
Brinkmann, Volker;
Liao, James K.;
Lo, Eng H.;
Waeber, Christian

Publication type:

Article

RhoA/ROCK signaling is essential for multiple aspects of VEGF-mediated angiogenesis.

Published in:

FASEB Journal, 2010, v. 24, n. 9, p. 3186, doi. 10.1096/fj.09-145102

By:

Bryan, Brad A.;
Dennstedt, Emily;
Mitchell, Dianne C.;
Walshe, Tony E.;
Noma, Kensuke;
Loureiro, Robyn;
Saint-Geniez, Magali;
Campaigniac, Jean-Paul;
Liao, James K.;
D'Amore, Patricia A.

Publication type:

Article

Deficiency of ROCK1 in bone marrow-derived cells protects against atherosclerosis in LDLR-/- mice.

Published in:

FASEB Journal, 2008, v. 22, n. 10, p. 3561, doi. 10.1096/fj.08-108829

By:

Hong-Wei Wang;
Ping-Yen Liu;
Oyama, Naotsugu;
Rikitake, Yoshiyuki;
Kitamoto, Shiro;
Gitlin, Jonathan;
Liao, James K.;
Boisvert, William A.

Publication type:

Article

Dynamic regulation of endothelial NOS mediated by competitive interaction with α-actinin-4 and calmodulin.

Published in:

FASEB Journal, 2008, v. 22, n. 5, p. 1450, doi. 10.1096/fj.07-9309com

By:

Yukio Hiroi;
Zhongmin Guo;
Yuxin Li;
Beggs, Alan H.;
Liao, James K.

Publication type:

Article

Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000311

By:

Chun Ye;
Galbraith, Simon J.;
Liao, James C.;
Eskin, Eleazar

Publication type:

Article

Incorporating qualitative knowledge in enzyme kinetic models using fuzzy logic.

Published in:

Biotechnology & Bioengineering, 1999, v. 62, n. 6, p. 722, doi. 10.1002/(SICI)1097-0290(19990320)62:6<722::AID-BIT11>3.0.CO;2-U

By:

Lee, Bogju;
Yen, John;
Yang, Linyu;
Liao, James C.

Publication type:

Article

Engineered isoprenoid pathway enhances astaxanthin production in Escherichia coli.

Published in:

Biotechnology & Bioengineering, 1999, v. 62, n. 2, p. 235, doi. 10.1002/(SICI)1097-0290(19990120)62:2<235::AID-BIT14>3.0.CO;2-U

By:

Wang, Chia-Wei;
Oh, Min-Kyu;
Liao, James C.

Publication type:

Article

Metabolic engineering and control analysis for production of aromatics: Role of transaldolase.

Published in:

Biotechnology & Bioengineering, 1997, v. 53, n. 2, p. 132, doi. 10.1002/(SICI)1097-0290(19970120)53:2<132::AID-BIT2>3.0.CO;2-P

By:

Lu, Jia-ling;
Liao, James C.

Publication type:

Article

Pathway analysis, engineering, and physiological considerations for redirecting central metabolism.

Published in:

Biotechnology & Bioengineering, 1996, v. 52, n. 1, p. 129, doi. 10.1002/(SICI)1097-0290(19961005)52:1<129::AID-BIT13>3.0.CO;2-J

By:

Liao, James C.;
Hou, Shao-Yi;
Chao, Yun-Peng

Publication type:

Article

Pathway engineering for production of aromatics in Escherichia coli: Confirmation of stoichiometric analysis by independent modulation of AroG, TktA, and Pps activities.

Published in:

Biotechnology & Bioengineering, 1995, v. 46, n. 4, p. 361, doi. 10.1002/bit.260460409

By:

Patnaik, Ranjan;
Spitzer, Richard G.;
Liao, James C.

Publication type:

Article

Experimental determination of flux control distribution in biochemical systems: In vitro model to analyze transient metabolite concentrations.

Published in:

Biotechnology & Bioengineering, 1993, v. 41, n. 11, p. 1121, doi. 10.1002/bit.260411116

By:

Delgado, Javier;
Meruane, Jorge;
Liao, James C.

Publication type:

Article

Kinetic characterization of baculovirus-induced cell death in insect cell cultures.

Published in:

Biotechnology & Bioengineering, 1993, v. 41, n. 1, p. 104, doi. 10.1002/bit.260410114

By:

Wu, Suh-Chin;
Dale, Bruce E.;
Liao, James C.

Publication type:

Article

Fermentation data analysis and state estimation in the presence of incomplete mass balance.

Published in:

Biotechnology & Bioengineering, 1989, v. 33, n. 5, p. 613, doi. 10.1002/bit.260330515

By:

Liao, James C.

Publication type:

Article

Characteristic reaction paths of biochemical reaction systems with time scale separation.

Published in:

Biotechnology & Bioengineering, 1988, v. 31, n. 8, p. 847, doi. 10.1002/bit.260310813

By:

Liao, James C.;
Lightfoot, Edwin N.

Publication type:

Article

Lumping analysis of biochemical reaction systems with time scale separation.

Published in:

Biotechnology & Bioengineering, 1988, v. 31, n. 8, p. 869, doi. 10.1002/bit.260310815

By:

Liao, James C.;
Lightfoot, Edwin N.

Publication type:

Article

Characterization and evolution of an activator-independent methanol dehydrogenase from Cupriavidus necator N-1.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 11, p. 4969, doi. 10.1007/s00253-016-7320-3

By:

Wu, Tung-Yun;
Chen, Chang-Ting;
Liu, Jessica;
Bogorad, Igor;
Damoiseaux, Robert;
Liao, James

Publication type:

Article

Synthetic non-oxidative glycolysis enables complete carbon conservation.

Published in:

Nature, 2013, v. 502, n. 7473, p. 693, doi. 10.1038/nature12575

By:

Bogorad, Igor W.;
Lin, Tzu-Shyang;
Liao, James C.

Publication type:

Article

ARNT-dependent HIF-2α signaling protects cardiac microvascular barrier integrity and heart function post-myocardial infarction.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-07753-1

By:

Ullah, Karim;
Ai, Lizhuo;
Li, Yan;
Liu, Lifeng;
Zhang, Qin;
Pan, Kaichao;
Humayun, Zainab;
Piao, Lin;
Sitikov, Albert;
Zhao, Qiong;
Su, Qiaozhu;
Sharp, Willard;
Fang, Yun;
Wu, David;
Liao, James K.;
Wu, Rongxue

Publication type:

Article

Evolutionary engineering of methylotrophic E. coli enables fast growth on methanol.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-53206-4

By:

Nieh, Liang-Yu;
Chen, Frederic Y.-H.;
Jung, Hsin-Wei;
Su, Kuan-Yu;
Tsuei, Chao-Yin;
Lin, Chun-Ting;
Lee, Yue-Qi;
Liao, James C.

Publication type:

Article

ROCK as a therapeutic target for ischemic stroke.

Published in:

Expert Review of Neurotherapeutics, 2017, v. 17, n. 12, p. 1167, doi. 10.1080/14737175.2017.1395700

By:

Sladojevic, Nikola;
Yu, Brian;
Liao, James K.

Publication type:

Article

Potential serum biomarkers in the pathophysiological processes of stroke.

Published in:

Expert Review of Neurotherapeutics, 2014, v. 14, n. 2, p. 173, doi. 10.1586/14737175.2014.875471

By:

Miao, Yanying;
Liao, James K

Publication type:

Article

Protective effects of statins involving both eNOS and tPA in focal cerebral ischemia.

Published in:

Journal of Cerebral Blood Flow & Metabolism, 2005, v. 25, n. 6, p. 722, doi. 10.1038/sj.jcbfm.9600070

By:

Asahi, Minoru;
Zhihong Huang;
Thomas, Sunu;
Yoshimura, Shin-ichi;
Sumii, Toshihisa;
Mori, Tatsuro;
Jianhua Qiu;
Amin-Hanjani, Sepideh;
Huang, Paul L.;
Liao, James K.;
Lo, Eng H.;
Moskowitz, Michael A.

Publication type:

Article

Nontranscriptional actions of the glucocorticoid receptor.

Published in:

Journal of Molecular Medicine, 2003, v. 81, n. 3, p. 168, doi. 10.1007/s00109-003-0418-y

By:

Limbourg, Florian P.;
Liao, James K.

Publication type:

Article

Understanding the molecular mechanisms of statin pleiotropic effects.

Published in:

Archives of Toxicology, 2023, v. 97, n. 6, p. 1529, doi. 10.1007/s00204-023-03492-6

By:

German, Charles A.;
Liao, James K.

Publication type:

Article

Philosophy of Outliers: Reintegrating Rare Events Into Biological Science.

Published in:

Integrative & Comparative Biology, 2021, v. 61, n. 6, p. 2191, doi. 10.1093/icb/icab166

By:

Cook, Chelsea N;
Freeman, Angela R;
Liao, James C;
Mangiamele, Lisa A

Publication type:

Article

Body Caudal Undulation Measured by Soft Sensors and Emulated by Soft Artificial Muscles.

Published in:

Integrative & Comparative Biology, 2021, v. 61, n. 5, p. 1955, doi. 10.1093/icb/icab182

By:

Schwab, Fabian;
Lunsford, Elias T;
Hong, Taehwa;
Wiesemüller, Fabian;
Kovac, Mirko;
Park, Yong-Lae;
Akanyeti, Otar;
Liao, James C;
Jusufi, Ardian

Publication type:

Article

Behavior, Electrophysiology, and Robotics Experiments to Study Lateral Line Sensing in Fishes.

Published in:

Integrative & Comparative Biology, 2018, v. 58, n. 5, p. 874, doi. 10.1093/icb/icy066

By:

Haehnel-Taguchi, Melanie;
Akanyeti, Otar;
Liao, James C

Publication type:

Article

Optimization-driven identification of genetic perturbations accelerates the convergence of model parameters in ensemble modeling of metabolic networks.

Published in:

Biotechnology Journal, 2013, v. 8, n. 9, p. 1090, doi. 10.1002/biot.201200270

By:

Zomorrodi, Ali R.;
Lafontaine Rivera, Jimmy G.;
Liao, James C.;
Maranas, Costas D.

Publication type:

Article