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Occult polyclonality of preclinical pancreatic cancer models drives in vitro evolution.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31376-3
By:
- Monberg, Maria E.;
- Geiger, Heather;
- Lee, Jaewon J.;
- Sharma, Roshan;
- Semaan, Alexander;
- Bernard, Vincent;
- Wong, Justin;
- Wang, Fang;
- Liang, Shaoheng;
- Swartzlander, Daniel B.;
- Stephens, Bret M.;
- Katz, Matthew H. G.;
- Chen, Ken;
- Robine, Nicolas;
- Guerrero, Paola A.;
- Maitra, Anirban
Publication type:
Article
Bi-order multimodal integration of single-cell data.
Published in:
Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02679-x
By:
- Dou, Jinzhuang;
- Liang, Shaoheng;
- Mohanty, Vakul;
- Miao, Qi;
- Huang, Yuefan;
- Liang, Qingnan;
- Cheng, Xuesen;
- Kim, Sangbae;
- Choi, Jongsu;
- Li, Yumei;
- Li, Li;
- Daher, May;
- Basar, Rafet;
- Rezvani, Katayoun;
- Chen, Rui;
- Chen, Ken
Publication type:
Article
MEDALT: single-cell copy number lineage tracing enabling gene discovery.
Published in:
Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02291-5
By:
- Wang, Fang;
- Wang, Qihan;
- Mohanty, Vakul;
- Liang, Shaoheng;
- Dou, Jinzhuang;
- Han, Jincheng;
- Minussi, Darlan Conterno;
- Gao, Ruli;
- Ding, Li;
- Navin, Nicholas;
- Chen, Ken
Publication type:
Article
Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-12917-9
By:
- Liang, Qingnan;
- Dharmat, Rachayata;
- Owen, Leah;
- Shakoor, Akbar;
- Li, Yumei;
- Kim, Sangbae;
- Vitale, Albert;
- Kim, Ivana;
- Morgan, Denise;
- Liang, Shaoheng;
- Wu, Nathaniel;
- Chen, Ken;
- DeAngelis, Margaret M.;
- Chen, Rui
Publication type:
Article
Decoupling Lineage-Associated Genes in Acute Myeloid Leukemia Reveals Inflammatory and Metabolic Signatures Associated With Outcomes.
Published in:
Frontiers in Oncology, 2021, v. 11, p. 1, doi. 10.3389/fonc.2021.705627
By:
- Abbas, Hussein A.;
- Mohanty, Vakul;
- Wang, Ruiping;
- Huang, Yuefan;
- Liang, Shaoheng;
- Wang, Feng;
- Zhang, Jianhua;
- Qiu, Yihua;
- Hu, Chenyue W.;
- Qutub, Amina A.;
- Dail, Monique;
- Bolen, Christopher R.;
- Daver, Naval;
- Konopleva, Marina;
- Futreal, Andrew;
- Chen, Ken;
- Wang, Linghua;
- Kornblau, Steven M.
Publication type:
Article
Single-cell CRISPR immune screens reveal immunological roles of tumor intrinsic factors.
Published in:
NAR Cancer, 2022, v. 4, n. 4, p. 1, doi. 10.1093/narcan/zcac038
By:
- Jiakai Hou;
- Shaoheng Liang;
- Chunyu Xu;
- Yanjun Wei;
- Yunfei Wang;
- Yukun Tan;
- Sahni, Nidhi;
- McGrail, Daniel J.;
- Bernatchez, Chantale;
- Davies, Michael;
- Yumei Li;
- Rui Chen;
- Yi, S. Stephen;
- Yiwen Chen;
- Cassian Yee;
- Ken Chen;
- Weiyi Peng
Publication type:
Article
Extended live-cell barcoding approach for multiplexed mass cytometry.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91816-w
By:
- Muftuoglu, Muharrem;
- Li, Li;
- Liang, Shaoheng;
- Mak, Duncan;
- Lin, Angelique J.;
- Fang, Junxiang;
- Burks, Jared K.;
- Chen, Ken;
- Andreeff, Michael
Publication type:
Article
Label-aware distance mitigates temporal and spatial variability for clustering and visualization of single-cell gene expression data.
Published in:
Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-05988-y
By:
- Liang, Shaoheng;
- Dou, Jinzhuang;
- Iqbal, Ramiz;
- Chen, Ken
Publication type:
Article
Single-cell chromatin accessibility profiling of acute myeloid leukemia reveals heterogeneous lineage composition upon therapy-resistance.
Published in:
Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05120-6
By:
- Fan, Huihui;
- Wang, Feng;
- Zeng, Andy;
- Murison, Alex;
- Tomczak, Katarzyna;
- Hao, Dapeng;
- Jelloul, Fatima Zahra;
- Wang, Bofei;
- Barrodia, Praveen;
- Liang, Shaoheng;
- Chen, Ken;
- Wang, Linghua;
- Zhao, Zhongming;
- Rai, Kunal;
- Jain, Abhinav K.;
- Dick, John;
- Daver, Naval;
- Futreal, Andy;
- Abbas, Hussein A.
Publication type:
Article
SCMarker: Ab initio marker selection for single cell transcriptome profiling.
Published in:
PLoS Computational Biology, 2019, v. 15, n. 10, p. 1, doi. 10.1371/journal.pcbi.1007445
By:
- Wang, Fang;
- Liang, Shaoheng;
- Kumar, Tapsi;
- Navin, Nicholas;
- Chen, Ken
Publication type:
Article
Latent periodic process inference from single-cell RNA-seq data.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15295-9
By:
- Liang, Shaoheng;
- Wang, Fang;
- Han, Jincheng;
- Chen, Ken
Publication type:
Article
Sensei: how many samples to tell a change in cell type abundance?
Published in:
BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-021-04526-5
By:
- Liang, Shaoheng;
- Willis, Jason;
- Dou, Jinzhuang;
- Mohanty, Vakul;
- Huang, Yuefan;
- Vilar, Eduardo;
- Chen, Ken
Publication type:
Article

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