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Disorder Prediction Methods, Their Applicability to Different Protein Targets and Their Usefulness for Guiding Experimental Studies.
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- International Journal of Molecular Sciences, 2015, v. 16, n. 8, p. 19040, doi. 10.3390/ijms160819040
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- Article
Dominant β-catenin mutations cause intellectual disability with recognizable syndromic features.
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- Journal of Clinical Investigation, 2014, v. 124, n. 4, p. 1468, doi. 10.1172/JCI70372
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- Article
MAP4K4 expression in cardiomyocytes: multiple isoforms, multiple phosphorylations and interactions with striatins.
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- Biochemical Journal, 2021, v. 478, n. 11, p. 2121, doi. 10.1042/BCJ20210003
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- Article
SOcK, MiSTs, MASK and STicKs: the GCKIII (germinal centre kinase III) kinases and their heterologous protein-protein interactions.
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- Biochemical Journal, 2013, v. 454, n. 1, p. 13, doi. 10.1042/BJ20130219
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- Article
ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W416, doi. 10.1093/nar/gkx332
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- Article
ReFOLD: a server for the refinement of 3D protein models guided by accurate quality estimates.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W422, doi. 10.1093/nar/gkx249
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- Article
IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W169, doi. 10.1093/nar/gkv236
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- Article
The FunFOLD2 server for the prediction of protein-ligand interactions.
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- Nucleic Acids Research, 2013, v. 41, p. W303, doi. 10.1093/nar/gkt498
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- Article
The ModFOLD4 server for the quality assessment of 3D protein models.
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- Nucleic Acids Research, 2013, v. 41, p. W368, doi. 10.1093/nar/gkt294
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- Article
The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W171, doi. 10.1093/nar/gkr184
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- Article
Benchmarking of AlphaFold2 accuracy self-estimates as indicators of empirical model quality and ranking: a comparison with independent model quality assessment programmes.
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- Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae491
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- Article
Genetic diversity at the Dhn3 locus in Turkish Hordeum spontaneum populations with comparative structural analyses.
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- Scientific Reports, 2016, p. 20966, doi. 10.1038/srep20966
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- Article
In silico identification and three-dimensional modelling of the missense mutation in ADAMTS2 in a sheep flock with dermatosparaxis.
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- Veterinary Dermatology, 2015, v. 26, n. 1, p. 49, doi. 10.1111/vde.12178
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- Article
FunFOLDQA: A Quality Assessment Tool for Protein-Ligand Binding Site Residue Predictions.
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- PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0038219
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- Article
Automated tertiary structure prediction with accurate local model quality assessment using the intfold-ts method.
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- Proteins, 2011, v. 79, p. 137, doi. 10.1002/prot.23120
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- Article
Prediction of global and local model quality in CASP8 using the ModFOLD server.
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- Proteins, 2009, v. 77, n. S9, p. 185, doi. 10.1002/prot.22491
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- Article
Benchmarking secondary structure prediction for fold recognition.
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- Proteins, 2003, v. 52, n. 2, p. 166, doi. 10.1002/prot.10408
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- Article
Assembling novel protein folds from super-secondary structural fragments.
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- Proteins, 2003, v. 53, n. S6, p. 480, doi. 10.1002/prot.10542
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- Article
Targeting novel folds for structural genomics.
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- Proteins, 2002, v. 48, n. 1, p. 44, doi. 10.1002/prot.10129
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- Article
FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins.
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- 2011
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- Product Review
Benchmarking consensus model quality assessment for protein fold recognition.
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- BMC Bioinformatics, 2007, v. 8, p. 345, doi. 10.1186/1471-2105-8-345
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- Article
Are the integrin binding motifs within SARS CoV-2 spike protein and MHC class II alleles playing the key role in COVID-19?
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- Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1177691
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- Article
Protein structure prediction servers at University College London.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w36, doi. 10.1093/nar/gki410
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- Article
The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d196
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- Article
The DISOPRED server for the prediction of protein disorder.
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- Bioinformatics, 2004, v. 20, n. 13, p. 2138, doi. 10.1093/bioinformatics/bth195
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- Article
The Genomic Threading Database.
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- Bioinformatics, 2004, v. 20, n. 1, p. 131, doi. 10.1093/bioinformatics/btg387
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- Article
What are the baselines for protein fold recognition?
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- Bioinformatics, 2001, v. 17, n. 1, p. 63, doi. 10.1093/bioinformatics/17.1.63
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- Article
The PSIPRED protein structure prediction server.
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- Bioinformatics, 2000, v. 16, n. 4, p. 404, doi. 10.1093/bioinformatics/16.4.404
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- Article
Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers.
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- Nucleic Acids Research, 2023, v. 51, n. W1, p. W274, doi. 10.1093/nar/gkad297
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- Article
ModFOLD8: accurate global and local quality estimates for 3D protein models.
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- Nucleic Acids Research, 2021, v. 49, n. W1, p. W425, doi. 10.1093/nar/gkab321
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- Article
IntFOLD: an integrated web resource for high performance protein structure and function prediction.
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- Nucleic Acids Research, 2019, v. 47, n. W1, p. W408, doi. 10.1093/nar/gkz322
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- Article
Improvement of protein tertiary and quaternary structure predictions using the ReFOLD refinement method and the AlphaFold2 recycling process.
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- Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad078
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- Article
QSOX2 Deficiency-induced short stature, gastrointestinal dysmotility and immune dysfunction.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52587-w
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- Article
Characterisation of HvVIP1 and expression profile analysis of stress response regulators in barley under Agrobacterium and Fusarium infections.
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- PLoS ONE, 2019, v. 14, n. 6, p. 1, doi. 10.1371/journal.pone.0218120
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- Article
Rapid protein domain assignment from amino acid sequence using predicted secondary structure.
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- Protein Science: A Publication of the Protein Society, 2002, v. 11, n. 12, p. 2814, doi. 10.1110/ps.0209902
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- Article
Estimation of model accuracy in CASP15 using the ModFOLDdock server.
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- Proteins, 2023, v. 91, n. 12, p. 1871, doi. 10.1002/prot.26532
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- Article
Estimation of model accuracy in CASP13.
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- Proteins, 2019, v. 87, n. 12, p. 1361, doi. 10.1002/prot.25767
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- Article
Methods for estimation of model accuracy in CASP12.
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- Proteins, 2018, v. 86, n. 1, p. 361, doi. 10.1002/prot.25395
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- Article
Accurate template‐based modeling in CASP12 using the IntFOLD4‐TS, ModFOLD6, and ReFOLD methods.
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- Proteins, 2018, v. 86, n. 1, p. 335, doi. 10.1002/prot.25360
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- Article
Structure and evolution of barley powdery mildew effector candidates.
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- BMC Genomics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2164-13-694
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- Article
Improvement of 3D protein models using multiple templates guided by single-template model quality assessment.
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- Bioinformatics, 2012, v. 28, n. 14, p. 1851, doi. 10.1093/bioinformatics/bts292
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- Article
The binding site distance test score: a robust method for the assessment of predicted protein binding sites.
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- Bioinformatics, 2010, v. 26, n. 22, p. 2920, doi. 10.1093/bioinformatics/btq543
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- Article
Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments.
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- Bioinformatics, 2010, v. 26, n. 2, p. 182, doi. 10.1093/bioinformatics/btp629
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- Article
PINOT: an intuitive resource for integrating protein-protein interactions.
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- Cell Communication & Signaling, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12964-020-00554-5
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- Article