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scCAD: Cluster decomposition-based anomaly detection for rare cell identification in single-cell expression data.
- Published in:
- Nature Communications, 2024, p. 1, doi. 10.1038/s41467-024-51891-9
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- Publication type:
- Article
Gaussian variant of Freivalds' algorithm for efficient and reliable matrix product verification.
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- Monte Carlo Methods & Applications, 2020, v. 26, n. 4, p. 273, doi. 10.1515/mcma-2020-2076
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- Article
Improving predicted protein loop structure ranking using a Pareto-optimality consensus method.
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- BMC Structural Biology, 2010, v. 10, p. 22, doi. 10.1186/1472-6807-10-22
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- Article
Teaching Information Security with Workflow Technology -- A Case Study Approach.
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- Journal of Information Systems Education, 2014, v. 25, n. 3, p. 201
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- Publication type:
- Article
Template-based C8-SCORPION: a protein 8-state secondary structure prediction method using structural information and context-based features.
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- BMC Bioinformatics, 2014, v. 15, n. Suppl 8, p. 1, doi. 10.1186/1471-2105-15-S8-S3
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- Publication type:
- Article
Dinosolve: a protein disulfide bonding prediction server using context-based features to enhance prediction accuracy.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-14-S13-S9
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- Publication type:
- Article
DeepFunc: A Deep Learning Framework for Accurate Prediction of Protein Functions from Protein Sequences and Interactions.
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- Proteomics, 2019, v. 19, n. 12, p. N.PAG, doi. 10.1002/pmic.201900019
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- Article
FLEXc: protein flexibility prediction using context-based statistics, predicted structural features, and sequence information.
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- 2016
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- Publication type:
- Abstract
TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning.
- Published in:
- Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae154
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- Publication type:
- Article
CRMSS: predicting circRNA-RBP binding sites based on multi-scale characterizing sequence and structure features.
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- Briefings in Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1093/bib/bbac530
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- Article
novel graph attention model for predicting frequencies of drug–side effects from multi-view data.
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- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab239
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- Article
DeepDTAF: a deep learning method to predict protein–ligand binding affinity.
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- Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab072
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- Article
Parallel computing for genome sequence processing.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab070
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- Publication type:
- Article
Computational drug repositioning based on multi-similarities bilinear matrix factorization.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa267
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- Article
Biomedical data and computational models for drug repositioning: a comprehensive review.
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- Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1604, doi. 10.1093/bib/bbz176
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- Article
Identifying new cancer genes based on the integration of annotated gene sets via hypergraph neural networks.
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- Bioinformatics, 2024, v. 40, p. i511, doi. 10.1093/bioinformatics/btae257
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- Article
MSDRP: a deep learning model based on multisource data for predicting drug response.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad514
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- Publication type:
- Article
CellBRF: a feature selection method for single-cell clustering using cell balance and random forest.
- Published in:
- Bioinformatics, 2023, v. 39, p. i368, doi. 10.1093/bioinformatics/btad216
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- Publication type:
- Article
DFHiC: a dilated full convolution model to enhance the resolution of Hi-C data.
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- Bioinformatics, 2023, v. 39, n. 5, p. 1, doi. 10.1093/bioinformatics/btad211
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- Publication type:
- Article
IIFDTI: predicting drug–target interactions through interactive and independent features based on attention mechanism.
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- Bioinformatics, 2022, v. 38, n. 17, p. 4153, doi. 10.1093/bioinformatics/btac485
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- Publication type:
- Article
BACPI: a bi-directional attention neural network for compound–protein interaction and binding affinity prediction.
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- Bioinformatics, 2022, v. 38, n. 7, p. 1995, doi. 10.1093/bioinformatics/btac035
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- Publication type:
- Article
A convolutional neural network and graph convolutional network-based method for predicting the classification of anatomical therapeutic chemicals.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2841, doi. 10.1093/bioinformatics/btab204
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- Article
CLPred: a sequence-based protein crystallization predictor using BLSTM neural network.
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- Bioinformatics, 2020, v. 36, p. i709, doi. 10.1093/bioinformatics/btaa791
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- Publication type:
- Article
Protein–protein interaction site prediction through combining local and global features with deep neural networks.
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- Bioinformatics, 2020, v. 36, n. 4, p. 1114, doi. 10.1093/bioinformatics/btz699
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- Publication type:
- Article
Drug repositioning based on bounded nuclear norm regularization.
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- Bioinformatics, 2019, v. 35, n. 14, p. i455, doi. 10.1093/bioinformatics/btz331
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- Publication type:
- Article
Prediction of lncRNA–disease associations based on inductive matrix completion.
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- Bioinformatics, 2018, v. 34, n. 19, p. 3357, doi. 10.1093/bioinformatics/bty327
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- Publication type:
- Article
Computational drug repositioning using low-rank matrix approximation and randomized algorithms.
- Published in:
- Bioinformatics, 2018, v. 34, n. 11, p. 1904, doi. 10.1093/bioinformatics/bty013
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- Publication type:
- Article
Network Connectivity, Centrality and Fragmentation in the Greek-Key Protein Topology.
- Published in:
- Protein Journal, 2019, v. 38, n. 5, p. 497, doi. 10.1007/s10930-019-09850-7
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- Article
An adaptive and trustworthy software testing framework on the grid.
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- Journal of Supercomputing, 2008, v. 46, n. 2, p. 124, doi. 10.1007/s11227-007-0160-2
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- Publication type:
- Article
Trustworthy remote compiling services for grid-based scientific applications.
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- Journal of Supercomputing, 2007, v. 41, n. 2, p. 119, doi. 10.1007/s11227-006-0029-9
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- Publication type:
- Article
High-dimensional MRI data analysis using a large-scale manifold learning approach.
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- Machine Vision & Applications, 2013, v. 24, n. 5, p. 995, doi. 10.1007/s00138-013-0499-8
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- Publication type:
- Article
Nonequilibrium, multiple-timescale simulations of ligand-receptor interactions in structured protein systems.
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- Proteins, 2003, v. 52, n. 3, p. 339, doi. 10.1002/prot.10411
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- Article
RCD+: Fast loop modeling server.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W395, doi. 10.1093/nar/gkw395
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- Publication type:
- Article
HiTE: a fast and accurate dynamic boundary adjustment approach for full-length transposable element detection and annotation.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49912-8
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- Publication type:
- Article
Grid-based Quasi-Monte Carlo Applications.
- Published in:
- Monte Carlo Methods & Applications, 2005, v. 11, n. 1, p. 39, doi. 10.1515/1569396054027265
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- Publication type:
- Article
Overlap matrix completion for predicting drug-associated indications.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 12, p. N.PAG, doi. 10.1371/journal.pcbi.1007541
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- Article
DeepFrag-k: a fragment-based deep learning approach for protein fold recognition.
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- BMC Bioinformatics, 2020, v. 21, p. N.PAG, doi. 10.1186/s12859-020-3504-z
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- Article
DeepEP: a deep learning framework for identifying essential proteins.
- Published in:
- BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-3076-y
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- Publication type:
- Article
DEMCMC-GPU: An Efficient Multi-Objective Optimization Method with GPU Acceleration on the Fermi Architecture.
- Published in:
- New Generation Computing, 2011, v. 29, n. 2, p. 163, doi. 10.1007/s00354-010-0103-y
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- Publication type:
- Article
Identifying the serious clinical outcomes of adverse reactions to drugs by a multi-task deep learning framework.
- Published in:
- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05243-w
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- Publication type:
- Article