Works matching AU Lewis, James D.

Results: 196

Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA.

Published in:

Bioinformatics, 2015, v. 31, n. 15, p. 2461, doi. 10.1093/bioinformatics/btv183

By:

Kelly, Brendan J.;
Gross, Robert;
Bittinger, Kyle;
Sherrill-Mix, Scott;
Lewis, James D.;
Collman, Ronald G.;
Bushman, Frederic D.;
Hongzhe Li

Publication type:

Article

Functional imaging of the interaction between gut microbiota and the human host: A proof-of-concept clinical study evaluating novel use for 18F-FDG PET-CT.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0192747

By:

Boursi, Ben;
Werner, Thomas J.;
Gholami, Saeid;
Houshmand, Sina;
Mamtani, Ronac;
Lewis, James D.;
Wu, Gary D.;
Alavi, Abass;
Yang, Yu-Xiao

Publication type:

Article

Generalized Poincaré Classes and Cubic Equivalences.

Published in:

Mathematische Nachrichten, 1996, v. 178, n. 1, p. 249, doi. 10.1002/mana.19961780112

By:

Lewis, James D.

Publication type:

Article

Cylinder Homomorphisms and Chow Groups.

Published in:

Mathematische Nachrichten, 1993, v. 160, n. 1, p. 205, doi. 10.1002/mana.3211600109

By:

Lewis, James D.

Publication type:

Article

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis.

Published in:

Nature Medicine, 2013, v. 19, n. 5, p. 576, doi. 10.1038/nm.3145

By:

Koeth, Robert A;
Wang, Zeneng;
Levison, Bruce S;
Buffa, Jennifer A;
Org, Elin;
Sheehy, Brendan T;
Britt, Earl B;
Fu, Xiaoming;
Wu, Yuping;
Li, Lin;
Smith, Jonathan D;
DiDonato, Joseph A;
Chen, Jun;
Li, Hongzhe;
Wu, Gary D;
Lewis, James D;
Warrier, Manya;
Brown, J Mark;
Krauss, Ronald M;
Tang, W H Wilson

Publication type:

Article

Association of Anti–Tumor Necrosis Factor Therapy With Mortality Among Veterans With Inflammatory Bowel Disease.

Published in:

JAMA Network Open, 2021, v. 4, n. 3, p. e210313, doi. 10.1001/jamanetworkopen.2021.0313

By:

Cohen-Mekelburg, Shirley;
Wallace, Beth I.;
Van, Tony;
Wiitala, Wyndy L.;
Govani, Shail M.;
Burns, Jennifer;
Lipson, Rachel;
Yun, Huifeng;
Hou, Jason;
Lewis, James D.;
Dominitz, Jason A.;
Waljee, Akbar K.

Publication type:

Article

Association Between Statin Use at the Time of Intra-abdominal Surgery and Postoperative Adhesion-Related Complications and Small-Bowel Obstruction.

Published in:

JAMA Network Open, 2021, v. 4, n. 2, p. e2036315, doi. 10.1001/jamanetworkopen.2020.36315

By:

Scott, Frank I.;
Vajravelu, Ravy K.;
Mamtani, Ronac;
Bianchina, Nicholas;
Mahmoud, Najjia;
Hou, Jason K.;
Wu, Qufei;
Wang, Xingmei;
Haynes, Kevin;
Lewis, James D.

Publication type:

Article

The Clinical Course of Bowel Urgency Severity Among Patients with Inflammatory Bowel Disease—A Real-World Study.

Published in:

Drugs - Real World Outcomes, 2024, v. 11, n. 3, p. 403, doi. 10.1007/s40801-024-00434-1

By:

Lewis, James D.;
Gibble, Theresa Hunter;
Shan, Mingyang;
Zhou, Xian;
Naegeli, April N.;
Dawwas, Ghadeer K.

Publication type:

Article

Association Between Breast Cancer Recurrence and Immunosuppression in Rheumatoid Arthritis and Inflammatory Bowel Disease: A Cohort Study.

Published in:

Arthritis & Rheumatology, 2016, v. 68, n. 10, p. 2403, doi. 10.1002/art.39738

By:

Mamtani, Ronac;
Clark, Amy S.;
Scott, Frank I.;
Brensinger, Colleen M.;
Boursi, Ben;
Chen, Lang;
Xie, Fenglong;
Yun, Huifeng;
Osterman, Mark T.;
Curtis, Jeffrey R.;
Lewis, James D.

Publication type:

Article

Comparative Risk of Hospitalized Infection Associated With Biologic Agents in Rheumatoid Arthritis Patients Enrolled in Medicare.

Published in:

Arthritis & Rheumatology, 2016, v. 68, n. 1, p. 56, doi. 10.1002/art.39399

By:

Yun, Huifeng;
Xie, Fenglong;
Delzell, Elizabeth;
Levitan, Emily B.;
Chen, Lang;
Lewis, James D.;
Saag, Kenneth G.;
Beukelman, Timothy;
Winthrop, Kevin L.;
Baddley, John W.;
Curtis, Jeffrey R.

Publication type:

Article

Risk of Acute Liver Injury With Antiretroviral Therapy by Viral Hepatitis Status.

Published in:

Open Forum Infectious Diseases, 2017, v. 4, n. 2, p. 1, doi. 10.1093/ofid/ofx012

By:

Gowda, Charitha;
Newcomb, Craig W.;
Qing Liu;
Carbonari, Dena M.;
Lewis, James D.;
Forde, Kimberly A.;
Goldberg, David S.;
Reddy, K. Rajender;
Roy, Jason A.;
Marks, Amy R.;
Schneider, Jennifer L.;
Kostman, Jay R.;
Tate, Janet P.;
Lim, Joseph K.;
Justice, Amy C.;
Goetz, Matthew Bidwell;
Corley, Douglas A.;
Lo Re III, Vincent

Publication type:

Article

Risk of Acute Liver Injury With Antiretroviral Therapy by Viral Hepatitis Status.

Published in:

Open Forum Infectious Diseases, 2017, v. 4, n. 1, p. 1, doi. 10.1093/ofid/ofx012

By:

Gowda, Charitha;
Newcomb, Craig W.;
Qing Liu;
Carbonari, Dena M.;
Lewis, James D.;
Forde, Kimberly A.;
Goldberg, David S.;
Reddy, K. Rajender;
Roy, Jason A.;
Marks, Amy R.;
Schneider, Jennifer L.;
Kostman, Jay R.;
Tate, Janet P.;
Lim, Joseph K.;
Justice, Amy C.;
Goetz, Matthew Bidwell;
Corley, Douglas A.;
Lo Re III, Vincent

Publication type:

Article

Obesity Is Associated With Worsened Outcomes in Patients With Ulcerative Colitis on Advanced Therapies: A Propensity Matched Cohort Study From the U.S.

Published in:

Alimentary Pharmacology & Therapeutics, 2025, v. 61, n. 7, p. 1197, doi. 10.1111/apt.18513

By:

Desai, Aakash;
Sehgal, Priya;
Khataniar, Himsikhar;
Lewis, James D.;
Farraye, Francis A.;
Lichtenstein, Gary R.;
Kochhar, Gursimran S.

Publication type:

Article

Variation in the Fitness Effects of Mutations with Population Density and Size in <i>Escherichia coli</i>.

Published in:

PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0105369

By:

Cao, Huansheng;
Butler, Kevin;
Hossain, Mithi;
Lewis, James D.

Publication type:

Article

Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071806

By:

Dollive, Serena;
Chen, Ying-Yu;
Grunberg, Stephanie;
Bittinger, Kyle;
Hoffmann, Christian;
Vandivier, Lee;
Cuff, Christopher;
Lewis, James D.;
Wu, Gary D.;
Bushman, Frederic D.

Publication type:

Article

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066019

By:

Hoffmann, Christian;
Dollive, Serena;
Grunberg, Stephanie;
Chen, Jun;
Li, Hongzhe;
Wu, Gary D.;
Lewis, James D.;
Bushman, Frederic D.

Publication type:

Article

Conservation of Gene Cassettes among Diverse Viruses of the Human Gut.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042342

By:

Minot, Samuel;
Wu, Gary D.;
Lewis, James D.;
Bushman, Frederic D.;
Rodriguez-Valera, Francisco

Publication type:

Article

Interventions for malnutrition in hospitalized adults: A systematic review and meta-analysis.

Published in:

2022

By:

Uhl, Stacey;
Siddique, Shazia M.;
Bloschichak, Aaron;
McKeever, William;
D'Anci, Kristen;
Leas, Brian;
Mull, Nikhil K.;
Compher, Charlene;
Lewis, James D.;
Wu, Gary D.;
Tsou, Amy Y.

Publication type:

journal article

Primary care physicians' decisions to perform flexible sigmoidoscopy.

Published in:

1999

By:

Lewis, James D.;
Asch, David A.;
Ginsberg, Gregory G.;
Hoops, Timothy C.;
Kochman, Michael L.;
Bilker, Warren B.;
Strom, Brian L.;
Lewis, J D;
Asch, D A;
Ginsberg, G G;
Hoops, T C;
Kochman, M L;
Bilker, W B;
Strom, B L

Publication type:

journal article

Sampling and pyrosequencing methods for characterizing bacterial communities in the human guy using 16S sequence tags.

Published in:

BMC Microbiology, 2010, v. 10, p. 206, doi. 10.1186/1471-2180-10-206

By:

Wu, Gary D.;
Lewis, James D.;
Hoffmann, Christian;
Ying-Yu Chen;
Knight, Rob;
Bittinger, Kyle;
Hwang, Jennifer;
Jun Chen;
Berkowsky, Ronald;
Nessel, Lisa;
Hongzhe Li;
Bushman, Frederic D.

Publication type:

Article

Disentangling the Association between Statins, Cholesterol, and Colorectal Cancer: A Nested Case-Control Study.

Published in:

2016

By:

Mamtani, Ronac;
Lewis, James D.;
Scott, Frank I.;
Ahmad, Tariq;
Goldberg, David S.;
Datta, Jashodeep;
Yang, Yu-Xiao;
Boursi, Ben

Publication type:

journal article

Age at flowering differentially affects vegetative and reproductive responses of a determinate annual plant to elevated carbon dioxide.

Published in:

Oecologia, 2003, v. 135, n. 2, p. 194, doi. 10.1007/s00442-003-1186-7

By:

Lewis, James D.;
Xianzhong Wang;
Griffin, Kevin L.;
Tissue, David T.

Publication type:

Article

The Hodge conjecture for a certain class of singular varieties.

Published in:

Mathematische Zeitschrift, 1997, v. 224, n. 1, p. 25, doi. 10.1007/PL00004283

By:

Lewis, James D.

Publication type:

Article

Association between longer therapy with thiazolidinediones and risk of bladder cancer: a cohort study.

Published in:

2012

By:

Mamtani R;
Haynes K;
Bilker WB;
Vaughn DJ;
Strom BL;
Glanz K;
Lewis JD;
Mamtani, Ronac;
Haynes, Kevin;
Bilker, Warren B;
Vaughn, David J;
Strom, Brian L;
Glanz, Karen;
Lewis, James D

Publication type:

journal article

Association Between Longer Therapy With Thiazolidinediones and Risk of Bladder Cancer: A Cohort Study.

Published in:

JNCI: Journal of the National Cancer Institute, 2012, v. 104, n. 18, p. 1411, doi. 10.1093/jnci/djs328

By:

Mamtani, Ronac;
Haynes, Kevin;
Bilker, Warren B.;
Vaughn, David J.;
Strom, Brian L.;
Glanz, Karen;
Lewis, James D.

Publication type:

Article

Age-related decline of stand biomass accumulation is primarily due to mortality and not to reduction in NPP associated with individual tree physiology, tree growth or stand structure in a Quercus-dominated forest.

Published in:

Journal of Ecology, 2012, v. 100, n. 2, p. 428, doi. 10.1111/j.1365-2745.2011.01933.x

By:

Xu, Cheng-Yuan;
Turnbull, Matthew H.;
Tissue, David T.;
Lewis, James D.;
Carson, Rob;
Schuster, William S. F.;
Whitehead, David;
Walcroft, Adrian S.;
Li, Jinbao;
Griffin, Kevin L.

Publication type:

Article

Medication class enrichment analysis: a novel algorithm to analyze multiple pharmacologic exposures simultaneously using electronic health record data.

Published in:

2018

By:

Vajravelu, Ravy K.;
Scott, Frank I.;
Mamtani, Ronac;
Hongzhe Li;
Moore, Jason H.;
Lewis, James D.;
Li, Hongzhe

Publication type:

journal article

Impact of eastern dwarf mistletoe (Arceuthobium pusillum) on host white spruce (Picea glauca) development, growth and performance across multiple scales.

Published in:

Physiologia Plantarum, 2013, v. 147, n. 4, p. 502, doi. 10.1111/j.1399-3054.2012.01681.x

By:

Logan, Barry A.;
Reblin, Jaret S.;
Zonana, David M.;
Dunlavey, Ryan F.;
Hricko, Carolyn R.;
Hall, Adam W.;
Schmiege, Stephanie C.;
Butschek, Ross A.;
Duran, Kristy L.;
Emery, R. J. Neil;
Kurepin, Leonid V.;
Lewis, James D.;
Pharis, Richard P.;
Phillips, Nathan G.;
Tissue, David T.

Publication type:

Article

Diet standardization reduces intra-individual microbiome variation.

Published in:

Gut Microbes, 2022, v. 14, n. 1, p. 1, doi. 10.1080/19490976.2022.2149047

By:

Delaroque, Clara;
Wu, Gary D.;
Compher, Charlene;
Josephine Ni;
Albenberg, Lindsey;
Qing Liu;
Yuan Tian;
Patterson, Andrew D.;
Lewis, James D.;
Gewirtz, Andrew T.;
Chassaing, Benoit

Publication type:

Article

Pioglitazone Use and Risk of Bladder Cancer--Reply.

Published in:

2015

By:

Ferrara, Assiamira;
Lewis, James D.;
Habel, Laurel A.

Publication type:

Letter

Pioglitazone Use and Risk of Bladder Cancer and Other Common Cancers in Persons With Diabetes.

Published in:

JAMA: Journal of the American Medical Association, 2015, v. 314, n. 3, p. 265, doi. 10.1001/jama.2015.7996

By:

Lewis, James D.;
Habel, Laurel A.;
Quesenberry, Charles P.;
Strom, Brian L.;
Peng, Tiffany;
Hedderson, Monique M.;
Ehrlich, Samantha F.;
Mamtani, Ronac;
Bilker, Warren;
Vaughn, David J.;
Nessel, Lisa;
Van Den Eeden, Stephen K.;
Ferrara, Assiamira

Publication type:

Article

Association Between the Initiation of Anti-Tumor Necrosis Factor Therapy and the Risk of Herpes Zoster.

Published in:

JAMA: Journal of the American Medical Association, 2013, v. 309, n. 9, p. 887, doi. 10.1001/jama.2013.1099

By:

Winthrop, Kevin L.;
Baddley, John W.;
Chen, Lang;
Liu, Liyan;
Grijalva, Carlos G.;
Delzell, Elizabeth;
Beukelman, Timothy;
Patkar, Nivedita M.;
Xie, Fenglong;
Saag, Kenneth G.;
Herrinton, Lisa J.;
Solomon, Daniel H.;
Lewis, James D.;
Curtis, Jeffrey R.

Publication type:

Article

Association Between Vaccination for Herpes Zoster and Risk of Herpes Zoster Infection Among Older Patients With Selected Immune-Mediated Diseases.

Published in:

JAMA: Journal of the American Medical Association, 2012, v. 308, n. 1, p. 43, doi. 10.1001/jama.2012.7304

By:

Zhang, Jie;
Xie, Fenglong;
Delzell, Elizabeth;
Chen, Lang;
Winthrop, Kevin L.;
Lewis, James D.;
Saag, Kenneth G.;
Baddley, John W.;
Curtis, Jeffrey R.

Publication type:

Article

Initiation of Tumor Necrosis Factor-a Antagonists and the Risk of Hospitalization for Infection in Patients With Autoimmune Diseases.

Published in:

JAMA: Journal of the American Medical Association, 2011, v. 306, n. 21, p. 2331, doi. 10.1001/jama.2011.1692

By:

Grijalva, Carlos G.;
Lang Chen;
Delzell, Elizabeth;
Baddley, John W.;
Beukelman, Timothy;
Winthrop, Kevin L.;
Griffin, Marie R.;
Herrinton, Lisa J.;
Liyan Liu;
Ouellet-Hellstrom, Rita;
Patkar, Nivedita M.;
Solomon, Daniel H.;
Lewis, James D.;
Fenglong Xie;
Saas, Kenneth G.;
Curtis, Jeffrey R.

Publication type:

Article

Role of Endoscopic Ultrasound and Magnetic Resonance Imaging in the Preoperative Staging of Pancreatic Adenocarcinoma.

Published in:

American Journal of Gastroenterology (Springer Nature), 2000, v. 95, n. 8, p. 1926, doi. 10.1111/j.1572-0241.2000.02245.x

By:

Ahmad, Nuzhat A.;
Lewis, James D.;
Siegelman, Evan S.;
Rosato, Ernest F.;
Ginsberg, Gregory G.;
Kochman, Michael L.

Publication type:

Article

HODGKIN'S DISEASE DIAGNOSED BY ENDOSCOPIC ULTRASOUND-GUIDED FINE NEEDLE ASPIRATION OF A PERIDUODENAL LYMPH NODE.

Published in:

1998

By:

Lewis, James D.;
Faigel, Douglas O.;
Dowdy, Yvonne;
Sack, Martha J.;
Salhany, Kevin E.;
Haynes, Brenda;
Fox, Kevin R.;
Ginsberg, Gregory G.

Publication type:

Case Study

Validation of new medication use algorithms as proxies for worsening disease activity in patients with juvenile idiopathic arthritis.

Published in:

Pharmacoepidemiology & Drug Safety, 2024, v. 33, n. 5, p. 1, doi. 10.1002/pds.5803

By:

Saito, Kyoko;
Gabbeta, Avinash;
Mulvihill, Evan;
Al‐Jaberi, Lina;
Beukelman, Timothy;
Lewis, James D.;
Rose, Carlos D.;
Strom, Brian L.;
Horton, Daniel B.

Publication type:

Article

Validating a novel algorithm to identify patients with autoimmune hepatitis in an administrative database.

Published in:

Pharmacoepidemiology & Drug Safety, 2021, v. 30, n. 9, p. 1168, doi. 10.1002/pds.5291

By:

Bittermann, Therese;
Mahmud, Nadim;
Lewis, James D.;
Levy, Cynthia;
Goldberg, David S.

Publication type:

Article

On hypersurfaces admitting a covering by rational curves.

Published in:

Communications in Algebra, 1985, v. 13, n. 9, p. 1917, doi. 10.1080/00927878508823259

By:

Lewis, James D.

Publication type:

Article

Photosynthetic responses of two eucalypts to industrial-age changes in atmospheric [CO<sub>2</sub>] and temperature.

Published in:

Plant, Cell & Environment, 2010, v. 33, n. 10, p. 1671, doi. 10.1111/j.1365-3040.2010.02172.x

By:

GHANNOUM, OULA;
PHILLIPS, NATHAN G.;
SEARS, MARIE A.;
LOGAN, BARRY A.;
LEWIS, JAMES D.;
CONROY, JANN P.;
TISSUE, DAVID T.

Publication type:

Article

Apixaban Versus Rivaroxaban in Patients With Atrial Fibrillation and Valvular Heart Disease : A Population-Based Study.

Published in:

2022

By:

Dawwas, Ghadeer K.;
Cuker, Adam;
Barnes, Geoffrey D.;
Lewis, James D.;
Hennessy, Sean

Publication type:

journal article

Risk for Recurrent Venous Thromboembolism and Bleeding With Apixaban Compared With Rivaroxaban: An Analysis of Real-World Data.

Published in:

2022

By:

Dawwas, Ghadeer K.;
Leonard, Charles E.;
Lewis, James D.;
Cuker, Adam

Publication type:

journal article

Effectiveness and Safety of Direct Oral Anticoagulants Versus Warfarin in Patients With Valvular Atrial Fibrillation.

Published in:

2021

By:

Dawwas, Ghadeer K.;
Barnes, Geoffrey D.;
Cuker, Adam;
Lewis, James D.

Publication type:

Letter

Effectiveness and Safety of Direct Oral Anticoagulants Versus Warfarin in Patients With Valvular Atrial Fibrillation : A Population-Based Cohort Study.

Published in:

2021

By:

Dawwas, Ghadeer K.;
Dietrich, Eric;
Cuker, Adam;
Barnes, Geoffrey D.;
Leonard, Charles E.;
Lewis, James D.

Publication type:

journal article

Increasing Incidence of Multiply Recurrent Clostridium difficile Infection.

Published in:

2018

By:

Ma, Gene K.;
Lewis, James D.

Publication type:

Letter

Increasing Incidence of Multiply Recurrent Clostridium difficile Infection in the United States: A Cohort Study.

Published in:

2017

By:

Ma, Gene K.;
Brensinger, Colleen M.;
Qufei Wu;
Lewis, James D.;
Wu, Qufei

Publication type:

journal article

Pushforwards of Chow groups of smooth ample divisors, with an emphasis on Jacobian varieties.

Published in:

Mathematische Nachrichten, 2022, v. 295, n. 12, p. 2301, doi. 10.1002/mana.202000125

By:

Banerjee, Kalyan;
Iyer, Jaya N. N.;
Lewis, James D.

Publication type:

Article

Influence of Corticosteroid Use on Short- and Long-Term Outcomes of Biologic Therapy for Inflammatory Bowel Diseases.

Published in:

Digestive Diseases & Sciences, 2022, v. 67, n. 11, p. 5168, doi. 10.1007/s10620-021-07361-z

By:

Sieber, Alexis;
Aberra, Faten N.;
Bonhomme, Brittaney;
McKeever, Liam;
Lewis, James D.

Publication type:

Article

Hospital Performance for Gastrointestinal Bleeding Mortality, Length of Stay, and Complication Rates in the USA.

Published in:

2022

By:

Siddique, Shazia Mehmood;
Mehta, Shivan J.;
Parsikia, Afshin;
Neuman, Mark D.;
Lewis, James D.

Publication type:

journal article

Endoscopy Is Not Associated with Infectious Adverse Events After Hematopoietic Cell Transplantation: A Retrospective Cohort Study.

Published in:

Digestive Diseases & Sciences, 2022, v. 67, n. 6, p. 2310, doi. 10.1007/s10620-021-07062-7

By:

Segura, Abraham;
Dalal, Rahul S.;
Golla, Meghana;
Gerson, James N.;
Mahmud, Nadim;
Lewis, James D.;
Vajravelu, Ravy K.

Publication type:

Article