Works by Lespinet, Olivier

Results: 23

Characterisation of two snail genes in the gastropod mollusc Patella vulgata. Implications for understanding the ancestral function of the snail-related genes in Bilateria.

Published in:

Development Genes & Evolution, 2002, v. 212, n. 4, p. 186, doi. 10.1007/s00427-002-0228-1

By:

Lespinet, Olivier;
Nederbragt, Alexander J.;
Cassan, Michel;
Dictus, Wim J.;
van Loon, André E.;
Adoutte, André

Publication type:

Article

Genome-Wide Comparative Analysis of pogo-Like Transposable Elements in Different Fusarium Species.

Published in:

Journal of Molecular Evolution, 2011, v. 73, n. 3/4, p. 230, doi. 10.1007/s00239-011-9472-1

By:

Dufresne, Marie;
Lespinet, Olivier;
Daboussi, Marie-Josée;
Hua-Van, Aurélie

Publication type:

Article

Genome-Wide Analysis of the Fusarium oxysporum mimp Family of MITEs and Mobilization of Both Native and De Novo Created mimps.

Published in:

Journal of Molecular Evolution, 2008, v. 67, n. 6, p. 631, doi. 10.1007/s00239-008-9164-7

By:

Bergemann, Mara;
Lespinet, Olivier;
M'Barek, Sarrah Ben;
Daboussi, Marie-Josée;
Dufresne, Marie

Publication type:

Article

Genome quality control: RIP (repeat-induced point mutation) comes to Podospora.

Published in:

Molecular Microbiology, 2001, v. 40, n. 3, p. 586, doi. 10.1046/j.1365-2958.2001.02367.x

By:

Graïa, Fatima;
Lespinet, Olivier;
Rimbault, Blandine;
Dequard-Chablat, Michelle;
Coppin, Evelyne;
Picard, Marguerite

Publication type:

Article

Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25462-1

By:

Lioy, Virginia S.;
Lorenzi, Jean-Noël;
Najah, Soumaya;
Poinsignon, Thibault;
Leh, Hervé;
Saulnier, Corinne;
Aigle, Bertrand;
Lautru, Sylvie;
Thibessard, Annabelle;
Lespinet, Olivier;
Leblond, Pierre;
Jaszczyszyn, Yan;
Gorrichon, Kevin;
Varoquaux, Nelle;
Junier, Ivan;
Boccard, Frédéric;
Pernodet, Jean-Luc;
Bury-Moné, Stéphanie

Publication type:

Article

A general framework for optimization of probes forgene expression microarray and its application tothe fungus Podospora anserina.

Published in:

BMC Research Notes, 2010, v. 3, p. 171, doi. 10.1186/1756-0500-3-171

By:

Bidard, Frédérique;
Imbeaud, Sandrine;
Reymond, Nancie;
Lespinet, Olivier;
Silar, Philippe;
Clavé, Corinne;
Delacroix, Hervé;
Berteaux-Lecellier, Véronique;
Debuchy, Robert

Publication type:

Article

On the predictibility of A-minor motifs from their local contexts.

Published in:

RNA Biology, 2022, v. 19, n. 1, p. 1208, doi. 10.1080/15476286.2022.2144611

By:

Gianfrotta, Coline;
Reinharz, Vladimir;
Lespinet, Olivier;
Barth, Dominique;
Denise, Alain

Publication type:

Article

Comparative Genomics among Closely Related Streptomyces Strains Revealed Specialized Metabolite Biosynthetic Gene Cluster Diversity.

Published in:

Antibiotics (2079-6382), 2018, v. 7, n. 4, p. 86, doi. 10.3390/antibiotics7040086

By:

Vicente, Cláudia M.;
Thibessard, Annabelle;
Lorenzi, Jean-Noël;
Benhadj, Mabrouka;
Hôtel, Laurence;
Gacemi-Kirane, Djamila;
Lespinet, Olivier;
Leblond, Pierre;
Aigle, Bertrand

Publication type:

Article

CusProSe: a customizable protein annotation software with an application to the prediction of fungal secondary metabolism genes.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-27813-y

By:

Oliveira, Leonor;
Chevrollier, Nicolas;
Dallery, Jean-Felix;
O'Connell, Richard J.;
Lebrun, Marc-Henri;
Viaud, Muriel;
Lespinet, Olivier

Publication type:

Article

Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data.

Published in:

BMC Evolutionary Biology, 2007, v. 7, p. 237, doi. 10.1186/1471-2148-7-237

By:

Lemoine, Frédéric;
Lespinet, Olivier;
Labedan, Bernard

Publication type:

Article

A Phylogenetic Framework to Simulate Synthetic Interspecies RNA-Seq Data.

Published in:

Molecular Biology & Evolution, 2023, v. 40, n. 1, p. 1, doi. 10.1093/molbev/msac269

By:

Bastide, Paul;
Soneson, Charlotte;
Stern, David B;
Lespinet, Olivier;
Gallopin, Mélina

Publication type:

Article

A meta-approach for improving the prediction and the functional annotation of ortholog groups.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S6-S16

By:

Pereira, Cécile;
Denise, Alain;
Lespinet, Olivier

Publication type:

Article

Comparative genomics of emerging pathogens in the Candida glabrata clade.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-623

By:

Gabaldón, Toni;
Martin, Tiphaine;
Marcet-Houben, Marina;
Durrens, Pascal;
Bolotin-Fukuhara, Monique;
Lespinet, Olivier;
Arnaise, Sylvie;
Boisnard, Stéphanie;
Aguileta, Gabriela;
Atanasova, Ralitsa;
Bouchier, Christiane;
Couloux, Arnaud;
Creno, Sophie;
Cruz, Jose Almeida;
Devillers, Hugo;
Enache-Angoulvant, Adela;
Guitard, Juliette;
Jaouen, Laure;
Ma, Laurence;
Marck, Christian

Publication type:

Article

Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi.

Published in:

Nature Communications, 2016, v. 7, n. 9, p. 13072, doi. 10.1038/ncomms13072

By:

Hacquard, Stéphane;
Kracher, Barbara;
Hiruma, Kei;
Münch, Philipp C.;
Garrido-Oter, Ruben;
Thon, Michael R.;
Weimann, Aaron;
Damm, Ulrike;
Dallery, Jean-Félix;
Hainaut, Matthieu;
Henrissat, Bernard;
Lespinet, Olivier;
Sacristán, Soledad;
van Themaat, Emiel Ver Loren;
Kemen, Eric;
McHardy, Alice C.;
Schulze-Lefert, Paul;
O'Connell, Richard J.

Publication type:

Article

Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi.

Published in:

Nature Communications, 2016, v. 7, n. 5, p. 11362, doi. 10.1038/ncomms11362

By:

Hacquard, Stéphane;
Kracher, Barbara;
Hiruma, Kei;
Münch, Philipp C.;
Garrido-Oter, Ruben;
Thon, Michael R.;
Weimann, Aaron;
Damm, Ulrike;
Dallery, Jean-Félix;
Hainaut, Matthieu;
Henrissat, Bernard;
Lespinet, Olivier;
Sacristán, Soledad;
Ver Loren van Themaat, Emiel;
Kemen, Eric;
McHardy, Alice C.;
Schulze-Lefert, Paul;
O'Connell, Richard J.

Publication type:

Article

ORENZA: a web resource for studying ORphan ENZyme activities.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 436, doi. 10.1186/1471-2105-7-436

By:

Lespinet, Olivier;
Labedan, Bernard

Publication type:

Article

SYNTERUPTOR: mining genomic islands for non-classical specialized metabolite gene clusters.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae069

By:

Haas, Drago;
Barba, Matthieu;
Vicente, Cláudia M.;
Nezbedová, Šarká;
Garénaux, Amélie;
Bury-Moné, Stéphanie;
Lorenzi, Jean-Noël;
Hôtel, Laurence;
Laureti, Luisa;
Thibessard, Annabelle;
Le Goff, Géraldine;
Ouazzani, Jamal;
Leblond, Pierre;
Aigle, Bertrand;
Pernodet, Jean-Luc;
Lespinet, Olivier;
Lautru, Sylvie

Publication type:

Article

Evolution of Genes Involved in Gamete Interaction: Evidence for Positive Selection, Duplications and Losses in Vertebrates.

Published in:

PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0044548

By:

Meslin, Camille;
Mugnier, Sylvie;
Callebaut, Isabelle;
Laurin, Michel;
Pascal, Géraldine;
Poupon, Anne;
Goudet, Ghylène;
Monget, Philippe;
Lespinet, Olivier

Publication type:

Article

Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4083-x

By:

Dallery, Jean-Félix;
Lapalu, Nicolas;
Zampounis, Antonios;
Pigné, Sandrine;
Luyten, Isabelle;
Amselem, Joëlle;
Wittenberg, Alexander H. J.;
Shiguo Zhou;
de Queiroz, Marisa V.;
Robin, Guillaume P.;
Auger, Annie;
Hainaut, Matthieu;
Henrissat, Bernard;
Ki-Tae Kim;
Yong-Hwan Lee;
Lespinet, Olivier;
Schwartz, David C.;
Thon, Michael R.;
O'Connell, Richard J.

Publication type:

Article

A lophotrochozoan twist gene is expressed in the ectomesoderm of the gastropod mollusk Patella vulgata.

Published in:

Evolution & Development, 2002, v. 4, n. 5, p. 334, doi. 10.1046/j.1525-142X.2002.02020.x

By:

Nederbragt, Alexander J.;
Lespinet, Olivier;
van Wageningen, Sake;
van Loon, André E.;
Adoutte, André;
Dictus, Wim J. A. G.

Publication type:

Article

The ribosome profiling landscape of yeast reveals a high diversity in pervasive translation.

Published in:

Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03403-7

By:

Papadopoulos, Chris;
Arbes, Hugo;
Cornu, David;
Chevrollier, Nicolas;
Blanchet, Sandra;
Roginski, Paul;
Rabier, Camille;
Atia, Safiya;
Lespinet, Olivier;
Namy, Olivier;
Lopes, Anne

Publication type:

Article

Profiling the orphan enzymes.

Published in:

Biology Direct, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1745-6150-9-10

By:

Sorokina, Maria;
Stam, Mark;
Médigue, Claudine;
Lespinet, Olivier;
Vallenet, David

Publication type:

Article

FUNGIpath: a tool to assess fungal metabolic pathways predicted by orthology.

Published in:

BMC Genomics, 2010, v. 11, p. 1, doi. 10.1186/1471-2164-11-81

By:

Grossetête, Sandrine;
Labedan, Bernard;
Lespinet, Olivier

Publication type:

Article