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Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes.
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- PLoS Biology, 2021, v. 19, n. 7, p. 1, doi. 10.1371/journal.pbio.3001309
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- Article
SMBE Secretary's Report.
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- Molecular Biology & Evolution, 2024, v. 41, n. 6, p. 1, doi. 10.1093/molbev/msae104
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- Article
Maintenance in the Chicken Genome of the Retroviral-like cENS Gene Family Specifically Expressed in Early Embryos.
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- Journal of Molecular Evolution, 2007, v. 65, n. 3, p. 215, doi. 10.1007/s00239-007-9001-4
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- Article
Hypervariable and Highly Divergent Intron-Exon Organizations in the ChordateOikopleura dioica.
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- Journal of Molecular Evolution, 2004, v. 59, n. 4, p. 448, doi. 10.1007/s00239-004-2636-5
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- Article
Codon Usage by Transposable Elements and Their Host Genes in Five Species.
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- Journal of Molecular Evolution, 2002, v. 54, n. 5, p. 625, doi. 10.1007/s00239-001-0059-0
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- Article
Erratum to: The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality.
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- Genome Biology & Evolution, 2021, v. 13, n. 9, p. 1, doi. 10.1093/gbe/evab175
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- Article
The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality.
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- Genome Biology & Evolution, 2021, v. 13, n. 5, p. 1, doi. 10.1093/gbe/evab062
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- Article
Microsporidian Genomes Harbor a Diverse Array of Transposable Elements that Demonstrate an Ancestry of Horizontal Exchange with Metazoans.
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- Genome Biology & Evolution, 2014, v. 6, n. 9, p. 2289, doi. 10.1093/gbe/evu178
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- Article
Specific Activation of an I-Like Element in Drosophila Interspecific Hybrids.
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- Genome Biology & Evolution, 2014, v. 6, n. 7, p. 1806, doi. 10.1093/gbe/evu141
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- Article
A New Genome-Wide Method to Track Horizontally Transferred Sequences: Application to Drosophila.
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- Genome Biology & Evolution, 2014, v. 6, n. 2, p. 416, doi. 10.1093/gbe/evu026
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- Article
TETOOLS facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes.
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- Nucleic Acids Research, 2017, v. 45, n. 4, p. 1, doi. 10.1093/nar/gkw953
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- Article
Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila.
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- FASEB Journal, 2009, v. 23, n. 5, p. 1482, doi. 10.1096/fj.08-123513
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- Article
Evolutionary Origins of Genomic Repertoires in Bacteria.
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- PLoS Biology, 2005, v. 3, n. 5, p. 807, doi. 10.1371/journal.pbio.0030130
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- Article
Evolutionary Origins of Genomic Repertoires in Bacteria.
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- PLoS Biology, 2005, v. 3, n. 4, p. 1, doi. 10.1371/journal.pbio.0030130
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- Article
From Gene Trees to Organismal Phylogeny in Prokaryotes: The Case of the ϒ-Proteobacteria.
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- PLoS Biology, 2003, v. 1, n. 1, p. 101, doi. 10.1371/journal.pbio.0000019
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- Article
Recent Bioinformatic Progress to Identify Epigenetic Changes Associated to Transposable Elements.
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- Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.891194
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- Article
Simulation-based estimation of branching models for LTR retrotransposons.
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- Bioinformatics, 2017, v. 33, n. 3, p. 320, doi. 10.1093/bioinformatics/btw622
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- Article
Endogenous Retroviruses in Fish Genomes: From Relics of Past Infections to Evolutionary Innovations?
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01197
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- Article
Evolutionary history of LTR-retrotransposons among 20 Drosophila species.
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- Mobile DNA, 2017, v. 8, p. 1, doi. 10.1186/s13100-017-0090-3
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- Article
A call for benchmarking transposable element annotation methods.
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- Mobile DNA, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13100-015-0044-6
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- Article
"One code to find them all": a perl tool to conveniently parse RepeatMasker output files.
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- Mobile DNA, 2014, v. 5, n. 1, p. 1, doi. 10.1186/1759-8753-5-13
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- Article
An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice.
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- Genes, 2020, v. 11, n. 9, p. 1046, doi. 10.3390/genes11091046
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- Article
On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses.
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- Genes, 2019, v. 10, n. 4, p. 258, doi. 10.3390/genes10040258
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- Article
Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes?
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- Genes, 2019, v. 10, n. 3, p. 249, doi. 10.3390/genes10030249
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- Article
Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats.
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- Mobile DNA, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13100-024-00317-w
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- Article
The transposable element environment of human genes is associated with histone and expression changes in cancer.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2970-1
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- Article
Genes Devoid of Full-Length Transposable Element Insertions are Involved in Development and in the Regulation of Transcription in Human and Closely Related Species.
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- Journal of Molecular Evolution, 2010, v. 71, n. 3, p. 180, doi. 10.1007/s00239-010-9376-5
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- Article
Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian <i>Anncaliia algerae</i>.
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- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0100791
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- Article
Subcellular Localization of ENS-1/ERNI in Chick Embryonic Stem Cells.
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- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092039
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- Article
The Evolutionary History of Quorum-Sensing Systems in Bacteria.
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- Molecular Biology & Evolution, 2004, v. 21, n. 5, p. 903, doi. 10.1093/molbev/msh097
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- Article
The Relative Abundance of Dinucleotides in Transposable Elements in Five Species.
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- Molecular Biology & Evolution, 2002, v. 19, n. 6, p. 964, doi. 10.1093/oxfordjournals.molbev.a004154
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- Article
Codon Usage and the Origin of P Elements.
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- Molecular Biology & Evolution, 2000, v. 17, n. 3, p. 467, doi. 10.1093/oxfordjournals.molbev.a026326
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- Article
Population‐specific dynamics and selection patterns of transposable element insertions in European natural populations.
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- Molecular Ecology, 2019, v. 28, n. 6, p. 1506, doi. 10.1111/mec.14963
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- Article
UrQt: an efficient software for the Unsupervised Quality trimming of NGS data.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0546-8
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- Article
Recognizing the pseudogenes in bacterial genomes.
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- Nucleic Acids Research, 2005, v. 33, n. 10, p. 3125, doi. 10.1093/nar/gki631
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- Article
The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes.
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- PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0139075
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- Article
MicroAnnot: A Dedicated Workflow for Accurate Microsporidian Genome Annotation.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 2, p. 880, doi. 10.3390/ijms25020880
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- Article
Losing helena: The extinction of a drosophila line-like element.
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- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-149
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