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Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-02039-y
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- Publication type:
- Article
Exploring hepatic hormone actions using a compilation of gene expression profiles.
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- BMC Physiology, 2005, v. 5, p. 8, doi. 10.1186/1472-6793-5-8
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- Publication type:
- Article
HBS1L-MYB intergenic variants modulate fetal hemoglobin via long-range MYB enhancers.
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- Journal of Clinical Investigation, 2014, v. 124, n. 4, p. 1699, doi. 10.1172/JCI71520
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- Article
Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation. differentiation.
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- PLoS Biology, 2019, v. 17, n. 4, p. 1, doi. 10.1371/journal.pbio.2006506
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- Publication type:
- Article
Regulatory divergence of the duplicated chromosomal loci sox11a/b by subpartitioning and sequence evolution of enhancers in zebrafish.
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- Molecular Genetics & Genomics, 2010, v. 283, n. 2, p. 171, doi. 10.1007/s00438-009-0503-1
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- Publication type:
- Article
Conserved non-coding elements: developmental gene regulation meets genome organization.
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- Nucleic Acids Research, 2017, v. 45, n. 22, p. 12611, doi. 10.1093/nar/gkx1074
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- Publication type:
- Article
Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs.
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- Nucleic Acids Research, 2016, v. 44, n. 7, p. 3070, doi. 10.1093/nar/gkv1354
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- Publication type:
- Article
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles.
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- Nucleic Acids Research, 2016, v. 44, n. 1, p. D110, doi. 10.1093/nar/gkv1176
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- Publication type:
- Article
CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses.
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- Nucleic Acids Research, 2015, v. 43, n. 8, p. e51, doi. 10.1093/nar/gkv054
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- Publication type:
- Article
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D142, doi. 10.1093/nar/gkt997
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- Publication type:
- Article
Chromatin and epigenetic features of long-range gene regulation.
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- Nucleic Acids Research, 2013, v. 41, n. 15, p. 7185, doi. 10.1093/nar/gkt499
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- Publication type:
- Article
r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data.
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- Nucleic Acids Research, 2013, v. 41, n. 13, p. e132, doi. 10.1093/nar/gkt373
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- Publication type:
- Article
OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. D845, doi. 10.1093/nar/gks1159
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- Publication type:
- Article
Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons.
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- Nucleic Acids Research, 2010, v. 38, n. 4, p. 1071, doi. 10.1093/nar/gkp1124
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- Publication type:
- Article
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.
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- Nucleic Acids Research, 2010, v. 38, p. D105, doi. 10.1093/nar/gkp950
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- Publication type:
- Article
CpG-depleted promoters harbor tissue-specific transcription factor binding signals—implications for motif overrepresentation analyses.
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- Nucleic Acids Research, 2009, v. 37, n. 19, p. 6305, doi. 10.1093/nar/gkp682
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- Publication type:
- Article
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.
- Published in:
- Nucleic Acids Research, 2008, v. 36, p. D102
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- Publication type:
- Article
RNAdb 2.0—an expanded database of mammalian non-coding RNAs.
- Published in:
- Nucleic Acids Research, 2007, v. 35, p. d178, doi. 10.1093/nar/gkl926
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- Publication type:
- Article
Neuronal genes deregulated in Cornelia de Lange Syndrome respond to removal and re-expression of cohesin.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23141-9
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- Publication type:
- Article
Neuronal genes deregulated in Cornelia de Lange Syndrome respond to removal and re-expression of cohesin.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23141-9
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- Publication type:
- Article
Core promoters across the genome.
- Published in:
- Nature Biotechnology, 2017, v. 35, n. 2, p. 123, doi. 10.1038/nbt.3788
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- Article
Dissecting genomic regulatory elements in vivo.
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- Nature Biotechnology, 2012, v. 30, n. 6, p. 504, doi. 10.1038/nbt.2266
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- Publication type:
- Article
Integrator is recruited to promoter‐proximally paused RNA Pol II to generate Caenorhabditis elegans piRNA precursors.
- Published in:
- EMBO Journal, 2021, v. 40, n. 5, p. 1, doi. 10.15252/embj.2020105564
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- Publication type:
- Article
Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes.
- Published in:
- Nature Genetics, 2011, v. 43, n. 6, p. 607, doi. 10.1038/ng.825
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- Article
Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution.
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- 2007
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- Publication type:
- Correction Notice
Genome-wide analysis of mammalian promoter architecture and evolution.
- Published in:
- Nature Genetics, 2006, v. 38, n. 6, p. 626, doi. 10.1038/ng1789
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- Publication type:
- Article
A deep learning method for replicate-based analysis of chromosome conformation contacts using Siamese neural networks.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40547-9
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- Publication type:
- Article
Computational Characterization of Modes of Transcriptional Regulation of Nuclear Receptor Genes.
- Published in:
- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088880
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- Publication type:
- Article
Dissecting the Transcriptional Regulatory Properties of Human Chromosome 16 Highly Conserved Non-Coding Regions.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024824
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- Publication type:
- Article
Gene Characterization Index: Assessing the Depth of Gene Annotation.
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- PLoS ONE, 2008, v. 3, n. 1, p. 1, doi. 10.1371/journal.pone.0001440
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- Publication type:
- Article
------Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods.
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- PLoS Genetics, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pgen.1008864
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- Article
Integrated analysis of yeast regulatory sequences for biologically linked clusters of genes.
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- Functional & Integrative Genomics, 2003, v. 3, n. 3, p. 125, doi. 10.1007/s10142-003-0086-6
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- Article
Metazoan promoters: emerging characteristics and insights into transcriptional regulation.
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- Nature Reviews Genetics, 2012, v. 13, n. 4, p. 233, doi. 10.1038/nrg3163
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- Publication type:
- Article
Mammalian RNA polymerase II core promoters: insights from genome-wide studies.
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- 2007
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- Publication type:
- journal article
Copy number variants in patients with intellectual disability affect the regulation of ARX transcription factor gene.
- Published in:
- Human Genetics, 2015, v. 134, n. 11/12, p. 1163, doi. 10.1007/s00439-015-1594-x
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- Publication type:
- Article
Variants of CYP46A1 may interact with age and APOE to influence CSF Aβ42 levels in Alzheimer’s disease.
- Published in:
- Human Genetics, 2004, v. 114, n. 6, p. 581, doi. 10.1007/s00439-004-1107-9
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- Publication type:
- Article
Transcriptional memory of cells of origin overrides β-catenin requirement of MLL cancer stem cells.
- Published in:
- EMBO Journal, 2017, v. 36, n. 21, p. 3139, doi. 10.15252/embj.201797994
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- Publication type:
- Article
Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development.
- Published in:
- EMBO Journal, 2012, v. 31, n. 4, p. 986, doi. 10.1038/emboj.2011.450
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- Publication type:
- Article
Identification of functional SNPs in the 5-prime flanking sequences of human genes.
- Published in:
- BMC Genomics, 2005, v. 6, p. 18, doi. 10.1186/1471-2164-6-18
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- Publication type:
- Article
Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes.
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- BMC Genomics, 2004, v. 5, p. 99, doi. 10.1186/1471-2164-5-99
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- Publication type:
- Article
Translog, a web browser for studying the expression divergence of homologous genes.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S1-S59
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- Publication type:
- Article
Trans-Splicing and Operons in Metazoans: Translational Control in Maternally Regulated Development and Recovery from Growth Arrest.
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- Molecular Biology & Evolution, 2015, v. 32, n. 3, p. 585, doi. 10.1093/molbev/msu336
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- Publication type:
- Article
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d95, doi. 10.1093/nar/gkj115
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- Publication type:
- Article
RNAdb—a comprehensive mammalian noncoding RNA database.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d125
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- Publication type:
- Article
ConSite: web-based prediction of regulatory elements using cross-species comparison.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w249, doi. 10.1093/nar/gkh372
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- Publication type:
- Article
JASPAR: an open‐access database for eukaryotic transcription factor binding profiles.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d91
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- Publication type:
- Article
tRNA recognition and evolution of determinants in seryl‐tRNA synthesis.
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- Nucleic Acids Research, 1999, v. 27, n. 3, p. 721, doi. 10.1093/nar/27.3.721
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- Publication type:
- Article
The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner.
- Published in:
- Epigenetics & Chromatin, 2012, v. 5, n. 1, p. 8, doi. 10.1186/1756-8935-5-8
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- Publication type:
- Article
Liver kinase B1 (LKB1) regulates the epigenetic landscape of mouse pancreatic beta cells.
- Published in:
- FASEB Journal, 2024, v. 38, n. 16, p. 1, doi. 10.1096/fj.202401078R
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- Publication type:
- Article
In Silico Detection of Sequence Variations Modifying Transcriptional Regulation.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 1, p. e5, doi. 10.1371/journal.pcbi.0040005
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- Publication type:
- Article