Works matching AU Lena, Pietro Di

Results: 24

methyLImp2: faster missing value estimation for DNA methylation data.

Published in:

Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae001

By:

Plaksienko, Anna;
Lena, Pietro Di;
Nardini, Christine;
Angelini, Claudia

Publication type:

Article

Fold recognition by scoring protein maps using the congruence coefficient.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 506, doi. 10.1093/bioinformatics/btaa833

By:

Lena, Pietro Di;
Baldi, Pierre

Publication type:

Article

Modified Methylation Following Electrostimulation in a Standardized Setting—Complementing a Transcriptomic Analysis.

Published in:

Cells (2073-4409), 2025, v. 14, n. 11, p. 838, doi. 10.3390/cells14110838

By:

Pietro, Biagio Di;
Villata, Simona;
Plaksienko, Anna;
Guarnieri, Tiziana;
Monego, Simeone Dal;
Degasperi, Margherita;
Lena, Pietro Di;
Licastro, Danilo;
Angelini, Claudia;
Frascella, Francesca;
Napione, Lucia;
Nardini, Christine

Publication type:

Article

Evaluation of pre-processing on the meta-analysis of DNA methylation data from the Illumina HumanMethylation450 BeadChip platform.

Published in:

PLoS ONE, 2020, v. 15, n. 3, p. 1, doi. 10.1371/journal.pone.0229763

By:

Sala, Claudia;
Di Lena, Pietro;
Fernandes Durso, Danielle;
Prodi, Andrea;
Castellani, Gastone;
Nardini, Christine

Publication type:

Article

Editorial: Computational methods for analysis of DNA methylation data, volume II.

Published in:

Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2024.1415791

By:

Di Lena, Pietro;
Nardini, Christine;
Pellegrini, Matteo

Publication type:

Article

Where are we in the implementation of tissue-specific epigenetic clocks?

Published in:

Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2024.1306244

By:

Sala, Claudia;
Di Lena, Pietro;
Fernandes Durso, Danielle;
Faria do Valle, Italo;
Bacalini, Maria Giulia;
Dall’Olio, Daniele;
Franceschi, Claudio;
Castellani, Gastone;
Garagnani, Paolo;
Nardini, Christine

Publication type:

Article

Evaluation of different computational methods for DNA methylation-based biological age.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac274

By:

Lena, Pietro Di;
Sala, Claudia;
Nardini, Christine

Publication type:

Article

Missing value estimation methods for DNA methylation data.

Published in:

Bioinformatics, 2019, v. 35, n. 19, p. 3786, doi. 10.1093/bioinformatics/btz134

By:

Lena, Pietro Di;
Sala, Claudia;
Prodi, Andrea;
Nardini, Christine

Publication type:

Article

NET-GE: a web-server for NETwork-based human gene enrichment.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3489, doi. 10.1093/bioinformatics/btw508

By:

Bovo, Samuele;
Di Lena, Pietro;
Martelli, Pier Luigi;
Fariselli, Piero;
Casadio, Rita

Publication type:

Article

Mechanotransduction map: simulation model, molecular pathway, gene set.

Published in:

Bioinformatics, 2015, v. 31, n. 7, p. 1053, doi. 10.1093/bioinformatics/btu776

By:

Dent, Jennifer E.;
Devescovi, Valentina;
Han Li;
Di Lena, Pietro;
Youtao Lu;
Yuanhua Liu;
Nardini, Christine

Publication type:

Article

Deep architectures for protein contact map prediction.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2449, doi. 10.1093/bioinformatics/bts475

By:

Di Lena, Pietro;
Nagata, Ken;
Baldi, Pierre

Publication type:

Article

Fast overlapping of protein contact maps by alignment of eigenvectors.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2250, doi. 10.1093/bioinformatics/btq402

By:

Di Lena, Pietro;
Fariselli, Piero;
Margara, Luciano;
Vassura, Marco;
Casadio, Rita

Publication type:

Article

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps.

Published in:

Bioinformatics, 2008, v. 24, n. 10, p. 1313, doi. 10.1093/bioinformatics/btn115

By:

Marco Vassura;
Luciano Margara;
Pietro Di Lena;
Filippo Medri;
Piero Fariselli;
Rita Casadio

Publication type:

Article

Blurring contact maps of thousands of proteins: what we can learn by reconstructing 3D structure.

Published in:

BioData Mining, 2011, v. 4, n. 1, p. 1, doi. 10.1186/1756-0381-4-1

By:

Vassura, Marco;
Di Lena, Pietro;
Margara, Luciano;
Mirto, Maria;
Aloisio, Giovanni;
Fariselli, Piero;
Casadio, Rita

Publication type:

Article

NET-GE: a novel NETwork-based Gene Enrichment for detecting biological processes associated to Mendelian diseases.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S8-S6

By:

Di Lena, Pietro;
Martelli, Pier Luigi;
Fariselli, Piero;
Casadio, Rita

Publication type:

Article

GOTA: GO term annotation of biomedical literature.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0777-8

By:

Di Lena, Pietro;
Domeniconi, Giacomo;
Margara, Luciano;
Moro, Gianluca

Publication type:

Article

MIMO: an efficient tool for molecular interaction maps overlap.

Published in:

BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-159

By:

Lena, Pietro Di;
Gang Wu;
Martelli, Pier Luigi;
Casadio, Rita;
Nardini, Christine

Publication type:

Article

Estimage: a webserver hub for the computation of methylation age.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W199, doi. 10.1093/nar/gkab426

By:

Di Lena, Pietro;
Sala, Claudia;
Nardini, Christine

Publication type:

Article

Genome-Wide Identification of Bcl11b Gene Targets Reveals Role in Brain-Derived Neurotrophic Factor Signaling.

Published in:

PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0023691

By:

Tang, Bin;
Di Lena, Pietro;
Schaffer, Lana;
Head, Steven R.;
Baldi, Pierre;
Thomas, Elizabeth A.

Publication type:

Article

On combining Big Data and machine learning to support eco-driving behaviours.

Published in:

Journal of Big Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40537-019-0226-z

By:

Delnevo, Giovanni;
Di Lena, Pietro;
Mirri, Silvia;
Prandi, Catia;
Salomoni, Paola

Publication type:

Article

Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.

Published in:

Human Mutation, 2017, v. 38, n. 9, p. 1182, doi. 10.1002/humu.23280

By:

Daneshjou, Roxana;
Wang, Yanran;
Bromberg, Yana;
Bovo, Samuele;
Martelli, Pier L;
Babbi, Giulia;
Lena, Pietro Di;
Casadio, Rita;
Edwards, Matthew;
Gifford, David;
Jones, David T;
Sundaram, Laksshman;
Bhat, Rajendra Rana;
Li, Xiaolin;
Pal, Lipika R.;
Kundu, Kunal;
Yin, Yizhou;
Moult, John;
Jiang, Yuxiang;
Pejaver, Vikas

Publication type:

Article

On Computing the Topological Entropy of One-sided Cellular Automata.

Published in:

Journal of Cellular Automata, 2007, v. 2, n. 2, p. 121

By:

Di Lena, Pietro

Publication type:

Article

Row Subshifts and Topological Entropy of Cellular Automata.

Published in:

Journal of Cellular Automata, 2007, v. 2, n. 2, p. 131

By:

Di Lena, Pietro;
Margara, Luciano

Publication type:

Article

Methylation data imputation performances under different representations and missingness patterns.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03592-5

By:

Lena, Pietro Di;
Sala, Claudia;
Prodi, Andrea;
Nardini, Christine

Publication type:

Article