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Delayed and Attenuated Antibody Responses to Coronavirus Disease 2019 Vaccination With Poor Cross-Variant Neutralization in Solid-Organ Transplant Recipients—A Prospective Longitudinal Study.
Published in:
Open Forum Infectious Diseases, 2023, v. 10, n. 8, p. 1, doi. 10.1093/ofid/ofad369
By:
- Liew, May Y;
- Mathews, Josh I;
- Li, Amy;
- Singh, Rohan;
- Jaramillo, Salvador A;
- Weiss, Zoe F;
- Bowman, Kathryn;
- Ankomah, Pierre O;
- Ghantous, Fadi;
- Lewis, Gregory D;
- Neuringer, Isabel;
- Bitar, Natasha;
- Lipiner, Taryn;
- Dighe, Anand S;
- Kotton, Camille N;
- Seaman, Michael S;
- Lemieux, Jacob E;
- Goldberg, Marcia B
Publication type:
Article
Babesia microti Variant With Multiple Resistance Mutations Detected in an Immunocompromised Patient Receiving Atovaquone Prophylaxis.
Published in:
Open Forum Infectious Diseases, 2023, v. 10, n. 3, p. 1, doi. 10.1093/ofid/ofad097
By:
- Holbrook, Nolan R;
- Klontz, Erik H;
- Adams, Gordon C;
- Schnittman, Samuel R;
- Issa, Nicolas C;
- Bond, Sheila A;
- Branda, John A;
- Lemieux, Jacob E
Publication type:
Article
Detection of the Omicron Variant Virus With the Abbott BinaxNow SARS-CoV-2 Rapid Antigen Assay.
Published in:
Open Forum Infectious Diseases, 2022, v. 9, n. 3, p. 1, doi. 10.1093/ofid/ofac022
By:
- Regan, James;
- Flynn, James P;
- Choudhary, Manish C;
- Uddin, Rockib;
- Lemieux, Jacob;
- Boucau, Julie;
- Bhattacharyya, Roby P;
- Barczak, Amy K;
- Li, Jonathan Z;
- Siedner, Mark J
Publication type:
Article
Powassan Virus Neuropathology and Genomic Diversity in Patients With Fatal Encephalitis.
Published in:
Open Forum Infectious Diseases, 2020, v. 7, n. 10, p. 1, doi. 10.1093/ofid/ofaa392
By:
- Normandin, Erica;
- Solomon, Isaac H;
- Zamirpour, Siavash;
- Lemieux, Jacob;
- Freije, Catherine A;
- Mukerji, Shibani S;
- Tomkins-Tinch, Christopher;
- Park, Daniel;
- Sabeti, Pardis C;
- Piantadosi, Anne
Publication type:
Article
CCR2 modulates inflammatory and metabolic effects of high-fat feeding.
Published in:
2006
By:
- Weisberg, Stuart P.;
- Hunter, Deborah;
- Huber, Reid;
- Lemieux, Jacob;
- Slaymaker, Sarah;
- Vaddi, Kris;
- Charo, Israel;
- Leibel, Rudolph L.;
- Ferrante, Jr., Anthony W.;
- Ferrante, Anthony W Jr
Publication type:
journal article
Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant.
Published in:
2021
By:
- Wang, Xue;
- Yurkovetskiy, Leonid;
- Shen, Kuang;
- Luban, Jeremy;
- Natalya, Dudkina;
- Pascal, Kristen;
- Tomkins-Tinch, Christopher;
- Nyalile, Thomas;
- Wang, Yetao;
- Baum, Alina;
- Diehl, William;
- Dauphin, Ann;
- Carbone, Claudia;
- Egri, Shawn;
- Veinotte, Kristen;
- Schaffner, Stephen;
- Lemieux, Jacob;
- Munro, James;
- Rafique, Ashique;
- Barve, Abhi
Publication type:
Abstract
Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant.
Published in:
2021
By:
- Wang, Xue;
- Yurkovetskiy, Leonid;
- Shen, Kuang;
- Luban, Jeremy;
- Natalya, Dudkina;
- Pascal, Kristen;
- Tomkins-Tinch, Christopher;
- Nyalile, Thomas;
- Wang, Yetao;
- Baum, Alina;
- Diehl, William;
- Dauphin, Ann;
- Carbone, Claudia;
- Egri, Shawn;
- Veinotte, Kristen;
- Schaffner, Stephen;
- Lemieux, Jacob;
- Munro, James;
- Rafique, Ashique;
- Barve, Abhi
Publication type:
Abstract
Microfluidic Assays for Probing Neutrophil-Borrelia Interactions in Blood During Lyme Disease.
Published in:
Cells Tissues Organs, 2022, v. 211, n. 3, p. 313, doi. 10.1159/000513118
By:
- Muldur, Sinan;
- Ellett, Felix;
- Marand, Anika L.;
- Marvil, Charles;
- Branda, John A.;
- LeMieux, Jacob E.;
- Raff, Adam B.;
- Strle, Klemen;
- Irimia, Daniel
Publication type:
Article
New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.
Published in:
Molecular Microbiology, 2010, v. 76, n. 1, p. 12, doi. 10.1111/j.1365-2958.2009.07026.x
By:
- Otto, Thomas D.;
- Wilinski, Daniel;
- Assefa, Sammy;
- Keane, Thomas M.;
- Sarry, Louis R.;
- Böhme, Ulrike;
- Lemieux, Jacob;
- Barrell, Bart;
- Pain, Arnab;
- Berriman, Matthew;
- Newbold, Chris;
- Llinás, Manuel
Publication type:
Article
Genome Wide Adaptations of Plasmodium falciparum in Response to Lumefantrine Selective Drug Pressure.
Published in:
PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0031623
By:
- Mwai, Leah;
- Diriye, Abdi;
- Masseno, Victor;
- Muriithi, Steven;
- Feltwell, Theresa;
- Musyoki, Jennifer;
- Lemieux, Jacob;
- Feller, Avi;
- Mair, Gunnar R.;
- Marsh, Kevin;
- Newbold, Chris;
- Nzila, Alexis;
- Carret, Céline K.
Publication type:
Article
Genome-wide profiling of chromosome interactions in Plasmodium falciparum characterizes nuclear architecture and reconfigurations associated with antigenic variation.
Published in:
Molecular Microbiology, 2013, v. 90, n. 3, p. 519, doi. 10.1111/mmi.12381
By:
- Lemieux, Jacob E.;
- Kyes, Sue A.;
- Otto, Thomas D.;
- Feller, Avi I.;
- Eastman, Richard T.;
- Pinches, Robert A.;
- Berriman, Matthew;
- Su, Xin‐zhuan;
- Newbold, Chris I.
Publication type:
Article
SARS-CoV-2 Virologic Rebound With Nirmatrelvir–Ritonavir Therapy: An Observational Study.
Published in:
Annals of Internal Medicine, 2023, v. 176, n. 12, p. 1577, doi. 10.7326/M23-1756
By:
- Edelstein, Gregory E.;
- Boucau, Julie;
- Uddin, Rockib;
- Marino, Caitlin;
- Liew, May Y.;
- Barry, Mamadou;
- Choudhary, Manish C.;
- Gilbert, Rebecca F.;
- Reynolds, Zahra;
- Li, Yijia;
- Tien, Dessie;
- Sagar, Shruti;
- Vyas, Tammy D.;
- Kawano, Yumeko;
- Sparks, Jeffrey A.;
- Hammond, Sarah P.;
- Wallace, Zachary;
- Vyas, Jatin M.;
- Barczak, Amy K.;
- Lemieux, Jacob E.
Publication type:
Article
Implementation of a SARS-CoV-2 Genotyping Panel for Prompt Omicron Variant Identification: A Pragmatic Tool for Clinical Laboratories.
Published in:
Annals of Internal Medicine, 2022, v. 175, n. 6, p. 906, doi. 10.7326/M22-0023
By:
- Nussbaum, Eliezer Zachary;
- Thiriveedhi, Vamsi;
- Uddin, Rockib;
- Cho, Ha Eun;
- Carroll, Seamus;
- Rosenberg, Eric S.;
- Lemieux, Jacob E.;
- Turbett, Sarah E.
Publication type:
Article
SARS-CoV-2 Reinfection in a Liver Transplant Recipient.
Published in:
2021
By:
- Tomkins-Tinch, Christopher H.;
- Daly, Jennifer S.;
- Gladden-Young, Adrianne;
- Theodoropoulos, Nicole M.;
- Madaio, Michael P.;
- Yu, Neng;
- Vanguri, Vijay K.;
- Siddle, Katherine J.;
- Adams, Gordon;
- Krasilnikova, Lydia A.;
- Movahedi, Babak;
- Bozorgzadeh, Adel;
- Simin, Karl;
- Lemieux, Jacob E.;
- Luban, Jeremy;
- Park, Daniel J.;
- MacInnis, Bronwyn L.;
- Sabeti, Pardis C.;
- Levitz, Stuart M.
Publication type:
Letter
Development of a SNP barcode to genotype Babesia microti infections.
Published in:
PLoS Neglected Tropical Diseases, 2019, v. 13, n. 3, p. 1, doi. 10.1371/journal.pntd.0007194
By:
- Baniecki, Mary Lynn;
- Moon, Jade;
- Sani, Kian;
- Lemieux, Jacob E.;
- Schaffner, Stephen F.;
- Sabeti, Pardis C.
Publication type:
Article
Coronavirus Disease 2019 (COVID-19) Diagnostic Clinical Decision Support: A Pre-Post Implementation Study of CORAL (COvid Risk cALculator).
Published in:
Clinical Infectious Diseases, 2021, v. 73, n. 12, p. 2248, doi. 10.1093/cid/ciab111
By:
- Dugdale, Caitlin M;
- Rubins, David M;
- Lee, Hang;
- McCluskey, Suzanne M;
- Ryan, Edward T;
- Kotton, Camille N;
- Hurtado, Rocio M;
- Ciaranello, Andrea L;
- Barshak, Miriam B;
- McEvoy, Dustin S;
- Nelson, Sandra B;
- Basgoz, Nesli;
- Lazarus, Jacob E;
- Ivers, Louise C;
- Reedy, Jennifer L;
- Hysell, Kristen M;
- Lemieux, Jacob E;
- Heller, Howard M;
- Dutta, Sayon;
- Albin, John S
Publication type:
Article
Detection of Borrelia burgdorferi Cell-free DNA in Human Plasma Samples for Improved Diagnosis of Early Lyme Borreliosis.
Published in:
Clinical Infectious Diseases, 2021, v. 73, n. 7, p. e2355, doi. 10.1093/cid/ciaa858
By:
- Branda, John A;
- Lemieux, Jacob E;
- Blair, Lily;
- Ahmed, Asim A;
- Hong, David K;
- Bercovici, Sivan;
- Blauwkamp, Timothy A;
- Hollemon, Desiree;
- Ho, Carine;
- Strle, Klemen;
- Damle, Nitin S;
- Lepore, Timothy J;
- Pollock, Nira R
Publication type:
Article
Rapid Detection of Powassan Virus in a Patient With Encephalitis by Metagenomic Sequencing.
Published in:
Clinical Infectious Diseases, 2018, v. 66, n. 5, p. 789, doi. 10.1093/cid/cix792
By:
- Piantadosi, Anne;
- Kanjilal, Sanjat;
- Ganesh, Vijay;
- Khanna, Arjun;
- Hyle, Emily P;
- Rosand, Jonathan;
- Bold, Tyler;
- Metsky, Hayden C;
- Lemieux, Jacob;
- Leone, Michael J
Publication type:
Article
Characterization of Virologic Rebound Following Nirmatrelvir-Ritonavir Treatment for Coronavirus Disease 2019 (COVID-19).
Published in:
Clinical Infectious Diseases, 2023, v. 76, n. 3, p. e526, doi. 10.1093/cid/ciac512
By:
- Boucau, Julie;
- Uddin, Rockib;
- Marino, Caitlin;
- Regan, James;
- Flynn, James P;
- Choudhary, Manish C;
- Chen, Geoffrey;
- Stuckwisch, Ashley M;
- Mathews, Josh;
- Liew, May Y;
- Singh, Arshdeep;
- Reynolds, Zahra;
- Iyer, Surabhi L;
- Chamberlin, Grace C;
- Vyas, Tammy D;
- Vyas, Jatin M;
- Turbett, Sarah E;
- Li, Jonathan Z;
- Lemieux, Jacob E;
- Barczak, Amy K
Publication type:
Article
Analysis of the Borreliaceae Pangenome Reveals a Distinct Genomic Architecture Conserved Across Phylogenetic Scales.
Published in:
Journal of Infectious Diseases, 2024, v. 230, p. S51, doi. 10.1093/infdis/jiae256
By:
- Lemieux, Jacob E
Publication type:
Article
Consulting the Oracle of SARS-CoV-2 Infection.
Published in:
2022
By:
- Lemieux, Jacob E;
- Luban, Jeremy
Publication type:
Editorial
Uncovering Ways That Emerging Severe Acute Respiratory Syndrome Coronavirus 2 Lineages May Increase Transmissibility.
Published in:
2021
By:
- Lemieux, Jacob E;
- Li, Jonathan Z
Publication type:
Editorial
Inferring selection effects in SARS-CoV-2 with Bayesian Viral Allele Selection.
Published in:
PLoS Genetics, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pgen.1010540
By:
- Jankowiak, Martin;
- Obermeyer, Fritz H.;
- Lemieux, Jacob E.
Publication type:
Article
Reduced Adiposity in ob/ob Mice following Total Body Irradiation and Bone Marrow Transplantation.
Published in:
Obesity (19307381), 2007, v. 15, n. 6, p. 1419, doi. 10.1038/oby.2007.170
By:
- Ablamunits, Vitaly;
- Weisberg, Stuart P.;
- Lemieux, Jacob E.;
- Combs, Terry P.;
- Klebanov, Simon
Publication type:
Article
Whole genome sequencing of human Borrelia burgdorferi isolates reveals linked blocks of accessory genome elements located on plasmids and associated with human dissemination.
Published in:
PLoS Pathogens, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.ppat.1011243
By:
- Lemieux, Jacob E.;
- Huang, Weihua;
- Hill, Nathan;
- Cerar, Tjasa;
- Freimark, Lisa;
- Hernandez, Sergio;
- Luban, Matteo;
- Maraspin, Vera;
- Bogovič, Petra;
- Ogrinc, Katarina;
- Ruzič-Sabljič, Eva;
- Lapierre, Pascal;
- Lasek-Nesselquist, Erica;
- Singh, Navjot;
- Iyer, Radha;
- Liveris, Dionysios;
- Reed, Kurt D.;
- Leong, John M.;
- Branda, John A.;
- Steere, Allen C.
Publication type:
Article

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