Works by Leigh Brown, Andrew J.

Results: 41

Episodic Sexual Transmission of HIV Revealed by Molecular Phylodynamics.

Published in:

PLoS Medicine, 2008, v. 5, n. 3, p. e50, doi. 10.1371/journal.pmed.0050050

By:

Lewis, Fraser;
Hughes, Gareth J.;
Rambaut, Andrew;
Pozniak, Anton;
Leigh Brown, Andrew J.

Publication type:

Article

A high HIV-1 strain variability in London, UK, revealed by full-genome analysis: Results from the ICONIC project.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0192081

By:

Yebra, Gonzalo;
Frampton, Dan;
Gallo Cassarino, Tiziano;
Raffle, Jade;
Hubb, Jonathan;
Ferns, R. Bridget;
Waters, Laura;
Tong, C. Y. William;
Kozlakidis, Zisis;
Hayward, Andrew;
Kellam, Paul;
Pillay, Deenan;
Clark, Duncan;
Nastouli, Eleni;
Leigh Brown, Andrew J.;
null, null

Publication type:

Article

The molecular epidemiology of human immunodeficiency virus type 1 in Edinburgh.

Published in:

1995

By:

Holmes, Edward C.;
Zhang, Lin Qi;
Robertson, Pamela;
Cleland, Alexander;
Harvey, Elizabeth;
Simmonds, Peter;
Leigh Brown, Andrew J.;
Holmes, E C;
Zhang, L Q;
Robertson, P;
Cleland, A;
Harvey, E;
Simmonds, P;
Leigh Brown, A J

Publication type:

journal article

Molecular Investigation of Human Immunodeficiency Virus (HIV) Infection in a Patient of an HIV-Infected Surgeon.

Published in:

Journal of Infectious Diseases, 1993, v. 167, n. 6, p. 1411, doi. 10.1093/infdis/167.6.1411

By:

Holmes, Edward C.;
Zhang, Lin Qi;
Simmonds, Peter;
Rogers, Audrey Smith;
Brown, Andrew J. Leigh

Publication type:

Article

The Contribution of Viral Genotype to Plasma Viral Set-Point in HIV Infection.

Published in:

PLoS Pathogens, 2014, v. 10, n. 5, p. 1, doi. 10.1371/journal.ppat.1004112

By:

Hodcroft, Emma;
Hadfield, Jarrod D.;
Fearnhill, Esther;
Phillips, Andrew;
Dunn, David;
O'Shea, Siobhan;
Pillay, Deenan;
Leigh Brown, Andrew J.

Publication type:

Article

Molecular Phylodynamics of the Heterosexual HIV Epidemic in the United Kingdom.

Published in:

PLoS Pathogens, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.ppat.1000590

By:

Hughes, Gareth J.;
Fearnhill, Esther;
Dunn, David;
Lycett, Samantha J.;
Rambaut, Andrew;
Brown, Andrew J. Leigh

Publication type:

Article

Adaptation to Human Populations Is Revealed by Within-Host Polymorphisms in HIV-1 and Hepatitis C Virus.

Published in:

PLoS Pathogens, 2007, v. 3, n. 3, p. 0409, doi. 10.1371/journal.ppat.0030045

By:

Poon, Art F. Y.;
Pond, Sergei L. Kosakovsky;
Bennett, Phil;
Richman, Douglas D.;
Brown, Andrew J. Leigh;
Frost, Simon D. W.

Publication type:

Article

Determining the Phylogenetic and Phylogeographic Origin of Highly Pathogenic Avian Influenza (H7N3) in Mexico.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107330

By:

Lu, Lu;
Lycett, Samantha J.;
Leigh Brown, Andrew J.

Publication type:

Article

Novel HIV-1 Recombinants Spreading across Multiple Risk Groups in the United Kingdom: The Identification and Phylogeography of Circulating Recombinant Form (CRF) 50_A1D.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0083337

By:

Foster, Geraldine M.;
Ambrose, John C.;
Hué, Stéphane;
Delpech, Valerie C.;
Fearnhill, Esther;
Abecasis, Ana B.;
Leigh Brown, Andrew J.;
Geretti, Anna Maria

Publication type:

Article

Quantifying predictors for the spatial diffusion of avian influenza virus in China.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-016-0845-3

By:

Lu Lu;
Leigh Brown, Andrew J.;
Lycett, Samantha J.

Publication type:

Article

Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses.

Published in:

PLoS Computational Biology, 2006, v. 2, n. 6, p. e62, doi. 10.1371/journal.pcbi.0020062

By:

Pond, Sergei L. Kosakovsky;
Frost, Simon D. W.;
Grossman, Zehava;
Gravenor, Michael B.;
Richman1, Douglas D.;
Leigh Brown, Andrew J.

Publication type:

Article

Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic.

Published in:

Scientific Reports, 2016, p. 39489, doi. 10.1038/srep39489

By:

Yebra, Gonzalo;
Hodcroft, Emma B.;
Ragonnet-Cronin, Manon L.;
Pillay, Deenan;
Brown, Andrew J. Leigh

Publication type:

Article

A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland.

Published in:

Scientific Reports, 2016, p. 32251, doi. 10.1038/srep32251

By:

Ragonnet-Cronin, Manon L.;
Shilaih, Mohaned;
Günthard, Huldrych F.;
Hodcroft, Emma B.;
Böni, Jürg;
Fearnhill, Esther;
Dunn, David;
Yerly, Sabine;
Klimkait, Thomas;
Aubert, Vincent;
Yang, Wan-Lin;
Brown, Alison E.;
Lycett, Samantha J.;
Kouyos, Roger;
Brown, Andrew J. Leigh

Publication type:

Article

An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000581

By:

Pond, Sergei L. Kosakovsky;
Posada, David;
Stawiski, Eric;
Chappey, Colombe;
Poon, Art F. Y.;
Hughes, Gareth;
Fearnhill, Esther;
Gravenor, Mike B.;
Brown, Andrew J. Leigh;
Frost, Simon D. W.

Publication type:

Article

High-Level Drug-Resistant Mutations among HIV-1 Subtype A6 and CRF02_AG in Kazakhstan.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 7, p. 1407, doi. 10.3390/v15071407

By:

Sanaubarova, Ainur;
Pujol-Hodge, Emma;
Dzissyuk, Natalya;
Lemey, Philippe;
Vermund, Sten H.;
Leigh Brown, Andrew J.;
Ali, Syed

Publication type:

Article

Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 8, p. 1673, doi. 10.3390/v14081673

By:

Pujol-Hodge, Emma;
Salazar-Gonzalez, Jesus F.;
Ssemwanga, Deogratius;
Charlebois, Edwin D.;
Ayieko, James;
Grant, Heather E.;
Liegler, Teri;
Atkins, Katherine E.;
Kaleebu, Pontiano;
Kamya, Moses R.;
Petersen, Maya;
Havlir, Diane V.;
Leigh Brown, Andrew J.

Publication type:

Article

Transmission Fitness of Drug-Resistant Human Immunodeficiency Virus and the Prevalence of Resistance in the Antiretroviral-Treated Population.

Published in:

Journal of Infectious Diseases, 2003, v. 187, n. 4, p. 683, doi. 10.1086/367989

By:

Brown, Andrew J. Leigh;
Frost, Simon D.W.;
Mathews, W. Christopher;
Dawson, Keith;
Hellmann, Nicholas S.;
Daar, Eric S.;
Richman, Douglas D.;
Little, Susan J.

Publication type:

Article

Residual HIV Type 1 RNA and DNA in Lymph Nodes and HIV RNA in Genital Secretions and in Cerebrospinal Fluid after Suppression of Viremia for 2 Years.

Published in:

Journal of Infectious Diseases, 2001, v. 183, n. 9, p. 1318

By:

Gunthard, Huldrych F.;
Havlir, Diane V.;
Fiscus, Susan;
Eron, Joseph;
Zhang, Zhi-Qiang;
Mellors, John;
Gulick, Roy;
Frost, Simon D. W.;
Leigh Brown, Andrew J.;
Schleif, William;
Jonas, Leslie;
Meibohm, Anne;
Isaacs, Robin;
Emini, Emilio;
Valentine, Fred;
Ignacio, Caroline C.;
Gamagami, Reza;
Haase, Ashley;
Richman, Douglas D.;
Wong, Joseph K.

Publication type:

Article

Patterns of Resistance Mutations Selected by Treatment of Human Immunodeficiency Virus Type 1...

Published in:

Journal of Infectious Diseases, 2000, v. 181, n. 3, p. 904, doi. 10.1086/315329

By:

Hanna, George J.;
Johnson, Victoria A.;
Kuritzkes, Daniel R.;
Richman, Douglas D.;
Brown, Andrew J. Leigh;
Savara, Anu V.;
Hazelwood, J. Darren;
D'Aquila, Richard T.

Publication type:

Article

Sequence Clusters in Human Immunodeficiency Virus Type 1 Reverse Transcriptase Are Associated with Subsequent Virological Response to Antiretroviral Therapy.

Published in:

Journal of Infectious Diseases, 1999, v. 180, n. 4, p. 1043, doi. 10.1086/315017

By:

Leigh-Brown, Andrew J.;
Wong, Joseph K.;
Johnson, Victoria A.;
Richman, Douglas D.;
Gunthard, Huldrych F.;
D'Aquila, Richard T.;
Kuritzkes, Daniel R.

Publication type:

Article

Effect of Chemokine Receptor Mutations on Heterosexual Human.

Published in:

Journal of Infectious Diseases, 1999, v. 180, n. 3, p. 614, doi. 10.1086/314918

By:

Lockett, Sarah F.;
Alonso, Alicia;
Wyld, Rona;
Martin, Maureen P.;
Robertson, J. Roy;
Gore, Sheila M.;
Leen, Clifford L.S.;
Brettle, Ray P.;
Yirrell, David L.;
Carrington, Mary;
Brown, Andrew J. Leigh

Publication type:

Article

Employing phylogenetic tree shape statistics to resolve the underlying host population structure.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04465-1

By:

Kayondo, Hassan W.;
Ssekagiri, Alfred;
Nabakooza, Grace;
Bbosa, Nicholas;
Ssemwanga, Deogratius;
Kaleebu, Pontiano;
Mwalili, Samuel;
Mango, John M.;
Leigh Brown, Andrew J.;
Saenz, Roberto A.;
Galiwango, Ronald;
Kitayimbwa, John M.

Publication type:

Article

AUTO-TUNE: selecting the distance threshold for inferring HIV transmission clusters.

Published in:

Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2024.1400003

By:

Weaver, Steven;
Dávila Conn, Vanessa M.;
Ji, Daniel;
Verdonk, Hannah;
Ávila-Ríos, Santiago;
Brown, Andrew J. Leigh;
Wertheim, Joel O.;
Pond, Sergei L. Kosakovsky

Publication type:

Article

Extensive Linkage Disequilibrium in the achaete-scute Complex of Drosophila melanogaster.

Published in:

Genetics, 1990, v. 126, n. 1, p. 121

By:

Macpherson, James N.;
Weir, B. S.;
Brown, Andrew J. Leigh

Publication type:

Article

Transposable Element-Induced Response to Artificial Selection in Drosophila melanogaster: Molecular Analysis of Selection Lines.

Published in:

Genetics, 1990, v. 125, n. 4, p. 803

By:

Shrimpton, Anthony E.;
Mackay, Trudy F. C.;
Brown, Andrew J. Leigh

Publication type:

Article

ESTIMATION OF GENETIC VARIABILITY IN NATURAL POPULATIONS OF DROSOPHILA SIMULANS BY TWO-DIMENSIONAL AND STARCH GEL ELECTROPHORESIS.

Published in:

Genetics, 1982, v. 100, n. 1, p. 127

By:

OHNISHI, SEIDO;
LEIGH BROWN, ANDREW J.;
VOELKER, ROBERT A.;
LANGLEY, CHARLES H.

Publication type:

Article

NULL ALLELE FREQUENCIES AT ALLOZYME LOCI IN NATURAL POPULATIONS OF DROSOPHILA MELANOGASTER.

Published in:

Genetics, 1981, v. 99, n. 1, p. 151

By:

LANGLEY, CHARLES H.;
VOELKER, ROBERT A.;
BROWN, ANDREW J. LEIGH;
OHNISHI, SEIDO;
DICKSON, BARBARA;
MONTGOMERY, ELIZABETH

Publication type:

Article

Phylogeography of Japanese Encephalitis Virus: Genotype Is Associated with Climate.

Published in:

PLoS Neglected Tropical Diseases, 2013, v. 7, n. 8, p. 1, doi. 10.1371/journal.pntd.0002411

By:

Schuh, Amy J.;
Ward, Melissa J.;
Leigh Brown, Andrew J.;
Barrett, Alan D. T.

Publication type:

Article

Phylogeography of Japanese Encephalitis Virus: Genotype Is Associated with Climate.

Published in:

PLoS Neglected Tropical Diseases, 2013, v. 7, n. 8, p. 1, doi. 10.1371/journal.pntd.0002411

By:

Schuh, Amy J.;
Ward, Melissa J.;
Leigh Brown, Andrew J.;
Barrett, Alan D. T.

Publication type:

Article

Insertion-deletion variation at the yellow-achaete-scute region in two natural populations of Drosophila melanogaster.

Published in:

Genetics Research, 1989, v. 53, n. 1, p. 7, doi. 10.1017/S0016672300027804

By:

Beech, Robin N.;
Brown, Andrew J. Leigh

Publication type:

Article

Transposition of the I element and copia in a natural population of Drosophila melanogaster.

Published in:

Genetics Research, 1987, v. 49, n. 2, p. 121, doi. 10.1017/S0016672300026914

By:

Leigh Brown, Andrew J.;
Moss, Julie E.

Publication type:

Article

Recent and Rapid Transmission of HIV Among People Who Inject Drugs in Scotland Revealed Through Phylogenetic Analysis.

Published in:

2018

By:

Ragonnet-Cronin, Manon;
Jackson, Celia;
Bradley-Stewart, Amanda;
Aitken, Celia;
McAuley, Andrew;
Palmateer, Norah;
Gunson, Rory;
Goldberg, David;
Milosevic, Catriona;
Leigh Brown, Andrew J.

Publication type:

journal article

Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters.

Published in:

2016

By:

Ragonnet-Cronin, Manon;
Lycett, Samantha J.;
Hodcroft, Emma B.;
Hué, Stéphane;
Fearnhill, Esther;
Brown, Alison E.;
Delpech, Valerie;
Dunn, David;
Leigh Brown, Andrew J.;
United Kingdom HIV Drug Resistance Database

Publication type:

journal article

The Global Transmission Network of HIV-1.

Published in:

Journal of Infectious Diseases, 2014, v. 209, n. 2, p. 304, doi. 10.1093/infdis/jit524

By:

Wertheim, Joel O.;
Leigh Brown, Andrew J.;
Hepler, N. Lance;
Mehta, Sanjay R.;
Richman, Douglas D.;
Smith, Davey M.;
Kosakovsky Pond, Sergei L.

Publication type:

Article

Transmission Network Parameters Estimated From HIV Sequences for a Nationwide Epidemic.

Published in:

Journal of Infectious Diseases, 2011, v. 204, n. 9, p. 1463, doi. 10.1093/infdis/jir550

By:

Leigh Brown, Andrew J.;
Lycett, Samantha J.;
Weinert, Lucy;
Hughes, Gareth J.;
Fearnhill, Esther;
Dunn, David T.

Publication type:

Article

A large population sample of African HIV genomes from the 1980s reveals a reduction in subtype D over time associated with propensity for CXCR4 tropism.

Published in:

Retrovirology, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12977-022-00612-5

By:

Grant, Heather E.;
Roy, Sunando;
Williams, Rachel;
Tutill, Helena;
Ferns, Bridget;
Cane, Patricia A.;
Carswell, J. Wilson;
Ssemwanga, Deogratius;
Kaleebu, Pontiano;
Breuer, Judith;
Leigh Brown, Andrew J.

Publication type:

Article

A large population sample of African HIV genomes from the 1980s reveals a reduction in subtype D over time associated with propensity for CXCR4 tropism.

Published in:

Retrovirology, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12977-022-00612-5

By:

Grant, Heather E.;
Roy, Sunando;
Williams, Rachel;
Tutill, Helena;
Ferns, Bridget;
Cane, Patricia A.;
Carswell, J. Wilson;
Ssemwanga, Deogratius;
Kaleebu, Pontiano;
Breuer, Judith;
Leigh Brown, Andrew J.

Publication type:

Article

HIV-TRACE (TRAnsmission Cluster Engine): a Tool for Large Scale Molecular Epidemiology of HIV-1 and Other Rapidly Evolving Pathogens.

Published in:

Molecular Biology & Evolution, 2018, v. 35, n. 7, p. 1812, doi. 10.1093/molbev/msy016

By:

Pond, Sergei L Kosakovsky;
Weaver, Steven;
Brown, Andrew J Leigh;
Wertheim, Joel O

Publication type:

Article

A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and Its Application to Influenza A Virus.

Published in:

Molecular Biology & Evolution, 2008, v. 25, n. 9, p. 1809, doi. 10.1093/molbev/msn123

By:

Pond, Sergei L. Kosakovsky;
Poon, Art F. Y.;
Brown, Andrew J. Leigh;
Frost, Simon D. W.

Publication type:

Article

Reassortment patterns of avian influenza virus internal segments among different subtypes.

Published in:

BMC Evolutionary Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2148-14-16

By:

Lu Lu;
Lycett, Samantha J.;
Brown, Andrew J. Leigh

Publication type:

Article

Evolutionary interactions between haemagglutinin and neuraminidase in avian.

Published in:

BMC Evolutionary Biology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2148-13-222

By:

Ward, Melissa J;
Lycett, Samantha J;
Avila, Dorita;
Bollback, Jonathan P;
Leigh Brown, Andrew J

Publication type:

Article