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The Peripheral Blood Transcriptome Identifies the Presence and Extent of Disease in Idiopathic Pulmonary Fibrosis.
Published in:
PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0037708
By:
- Yang, Ivana V.;
- Luna, Leah G.;
- Cotter, Jennifer;
- Talbert, Janet;
- Leach, Sonia M.;
- Kidd, Raven;
- Turner, Julia;
- Kummer, Nathan;
- Kervitsky, Dolly;
- Brown, Kevin K.;
- Boon, Kathy;
- Schwarz, Marvin I.;
- Schwartz, David A.;
- Steele, Mark P.
Publication type:
Article
Spatial and Temporal Analysis of Gene Expression during Growth and Fusion of the Mouse Facial Prominences.
Published in:
PLoS ONE, 2009, v. 4, n. 12, p. 1, doi. 10.1371/journal.pone.0008066
By:
- Weiguo Feng;
- Leach, Sonia M.;
- Tipney, Hannah;
- Tzulip Phang;
- Geraci, Mark;
- Spritz, Richard A.;
- Hunter, Lawrence E.;
- Williams, Trevor
Publication type:
Article
Unexpected effects of different genetic backgrounds on identification of genomic rearrangements via whole-genome next generation sequencing.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3153-9
By:
- Zhangguo Chen;
- Gowan, Katherine;
- Leach, Sonia M.;
- Viboolsittiseri, Sawanee S.;
- Mishra, Ameet K.;
- Tanya Kadoishi;
- Diener, Katrina;
- Gao, Bifeng;
- Jones, Kenneth;
- Wang, Jing H.
Publication type:
Article
The Kinome of Human Alveolar Type II and Basal Cells, and Its Reprogramming in Lung Cancer.
Published in:
American Journal of Respiratory Cell & Molecular Biology, 2019, v. 61, n. 4, p. 481, doi. 10.1165/rcmb.2018-0283OC
By:
- Leach, Sonia M.;
- Finigan, Jay;
- Vasu, Vihas T.;
- Mishra, Rangnath;
- Ghosh, Moumita;
- Foster, Daniel;
- Mason, Robert;
- Kosmider, Beata;
- Hesson, Eveline Farias;
- Kern, Jeffrey A.
Publication type:
Article
Deletion of c-FLIP from CD11b<sup>hi</sup> Macrophages Prevents Development of Bleomycin-induced Lung Fibrosis.
Published in:
American Journal of Respiratory Cell & Molecular Biology, 2018, v. 58, n. 1, p. 66, doi. 10.1165/rcmb.2017-0154OC
By:
- McCubbrey, Alexandra L.;
- Barthel, Lea;
- Mohning, Michael P.;
- Redente, Elizabeth F.;
- Mould, Kara J.;
- Thomas, Stacey M.;
- Leach, Sonia M.;
- Danhorn, Thomas;
- Gibbings, Sophie L.;
- Jakubzick, Claudia V.;
- Henson, Peter M.;
- Janssen, William J.
Publication type:
Article
Cell Origin Dictates Programming of Resident versus Recruited Macrophages during Acute Lung Injury.
Published in:
American Journal of Respiratory Cell & Molecular Biology, 2017, v. 57, n. 3, p. 294, doi. 10.1165/rcmb.2017-0061OC
By:
- Mould, Kara J.;
- Barthel, Lea;
- Mohning, Michael P.;
- Thomas, Stacey M.;
- McCubbrey, Alexandra L.;
- Danhorn, Thomas;
- Leach, Sonia M.;
- Fingerlin, Tasha E.;
- O'Connor, Brian P.;
- Reisz, Julie A.;
- D'Alessandro, Angelo;
- Bratton, Donna L.;
- Jakubzick, Claudia V.;
- Janssen, William J.
Publication type:
Article
Three Unique Interstitial Macrophages in the Murine Lung at Steady State.
Published in:
American Journal of Respiratory Cell & Molecular Biology, 2017, v. 57, n. 1, p. 66, doi. 10.1165/rcmb.2016-0361OC
By:
- Gibbings, Sophie L.;
- Thomas, Stacey M.;
- Atif, Shaikh M.;
- McCubbrey, Alexandra L.;
- Desch, A. Nicole;
- Danhorn, Thomas;
- Leach, Sonia M.;
- Bratton, Donna L.;
- Henson, Peter M.;
- Janssen, William J.;
- Jakubzick, Claudia V.
Publication type:
Article
The topology of the bacterial co-conserved protein network and its implications for predicting protein function.
Published in:
BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-313
By:
- Karimpour-Fard, Anis;
- Leach, Sonia M.;
- Hunter, Lawrence E.;
- Gill, Ryan T.
Publication type:
Article
Leveraging existing biological knowledge in the identification of candidate genes for facial dysmorphology.
Published in:
BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S2-S12
By:
- Tipney, Hannah J.;
- Leach, Sonia M.;
- Weiguo Feng;
- Spritz, Richard;
- Williams, Trevor;
- Hunter, Lawrence
Publication type:
Article
Predicting protein linkages in bacteria: Which method is best depends on task.
Published in:
BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-397
By:
- Karimpour-Fard, Anis;
- Leach, Sonia M.;
- Gill, Ryan T.;
- Hunter, Lawrence E.
Publication type:
Article
Improving protein function prediction methods with integrated literature data.
Published in:
BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-198
By:
- Gabow, Aaron P.;
- Leach, Sonia M.;
- Baumgartner, William A.;
- Hunter, Lawrence E.;
- Goldberg, Debra S.
Publication type:
Article
Inflammation-Induced Alternative Pre-mRNA Splicing in Mouse Alveolar Macrophages.
Published in:
G3: Genes | Genomes | Genetics, 2020, v. 10, n. 2, p. 555, doi. 10.1534/g3.119.400935
By:
- Janssen, William J.;
- Danhorn, Thomas;
- Harris, Chelsea;
- Mould, Kara J.;
- Frank Fang-Yao Lee;
- Hedin, Brenna R.;
- D'Alessandro, Angelo;
- Leach, Sonia M.;
- Alper, Scott
Publication type:
Article
Biomedical Discovery Acceleration, with Applications to Craniofacial Development.
Published in:
PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000215
By:
- Leach, Sonia M.;
- Tipney, Hannah;
- Weiguo Feng;
- Baumgartner Jr., William A.;
- Kasliwal, Priyanka;
- Schuyler, Ronald P.;
- Williams, Trevor;
- Spritz, Richard A.;
- Hunter, Lawrence
Publication type:
Article
Genome-wide association study identifies multiple HLA loci for sarcoidosis susceptibility.
Published in:
Human Molecular Genetics, 2023, v. 32, n. 16, p. 2669, doi. 10.1093/hmg/ddad067
By:
- Liao, Shu-Yi;
- Jacobson, Sean;
- Hamzeh, Nabeel Y;
- Culver, Daniel A;
- Barkes, Briana Q;
- Mroz, Margarita;
- Macphail, Kristyn;
- Pacheco, Karin;
- Patel, Divya C;
- Wasfi, Yasmine S;
- Koth, Laura L;
- Langefeld, Carl D;
- Leach, Sonia M;
- White, Elizabeth;
- Montgomery, Courtney;
- Maier, Lisa A;
- Fingerlin, Tasha E;
- Investigators, GRADs
Publication type:
Article
Inhibition of Transcription Factor Specificity Protein 1 Alters the Gene Expression Profile of Keratinocytes Leading to Upregulation of Kallikrein-Related Peptidases and Thymic Stromal Lymphopoietin.
Published in:
Journal of Investigative Dermatology, 2011, v. 131, n. 11, p. 2213, doi. 10.1038/jid.2011.202
By:
- Bin, Lianghua;
- Kim, Byung E;
- Hall, Clifton F;
- Leach, Sonia M;
- Leung, Donald Y M
Publication type:
Article
GEST: a gene expression search tool based on a novel Bayesian similarity metric.
Published in:
Bioinformatics, 2001, v. 17, p. 115, doi. 10.1093/bioinformatics/17.suppl_1.s115
By:
- Hunter, Lawrence;
- Taylor, Ronald C.;
- Leach, Sonia M.;
- Simon, Richard
Publication type:
Article
Comparative Genomics RNAi Screen Identifies Eftud2 as a Novel Regulator of Innate Immunity.
Published in:
Genetics, 2014, v. 197, n. 2, p. 485, doi. 10.1534/genetics.113.160499
By:
- De Arras, Lesly;
- Laws, Rebecca;
- Leach, Sonia M.;
- Pontis, Kyle;
- Freedman, Jonathan H.;
- Schwartz, David A.;
- Alper, Scott
Publication type:
Article
Innate and adaptive signals enhance differentiation and expansion of dual-antibody autoreactive B cells in lupus.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06293-z
By:
- Sang, Allison;
- Danhorn, Thomas;
- Peterson, Jacob N.;
- Rankin, Andrew L.;
- O’Connor, Brian P.;
- Leach, Sonia M.;
- Torres, Raul M.;
- Pelanda, Roberta
Publication type:
Article
Combined deletion of Xrcc4 and Trp53 in mouse germinal center B cells leads to novel B cell lymphomas with clonal heterogeneity.
Published in:
Journal of Hematology & Oncology, 2016, v. 9, p. 1, doi. 10.1186/s13045-015-0230-5
By:
- Zhangguo Chen;
- Elos, Mihret T.;
- Viboolsittiseri, Sawanee S.;
- Gowan, Katherine;
- Leach, Sonia M.;
- Rice, Michael;
- Eder, Maxwell D.;
- Jones, Kenneth;
- Wang, Jing H.
Publication type:
Article
Standardization of flow cytometry and cell sorting to enable a transcriptomic analysis in a multi-site sarcoidosis study.
Published in:
PLoS ONE, 2023, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0281210
By:
- Magallon, Roman E.;
- Harmacek, Laura D.;
- Arger, Nicholas K.;
- Grewal, Pineet;
- Powers, Linda;
- Werner, Brenda R.;
- Barkes, Briana Q.;
- Li, Li;
- MacPhail, Kristyn;
- Gillespie, May;
- White, Elizabeth K.;
- Collins, Sarah E.;
- Brown, Talyor;
- Cardenas, Jessica;
- Chen, Edward S.;
- Maier, Lisa A.;
- Leach, Sonia M.;
- Hamzeh, Nabeel Y.;
- Koth, Laura L.;
- O'Connor, Brian P.
Publication type:
Article
Molecular networks in atopic mothers impact the risk of infant atopy.
Published in:
Allergy, 2023, v. 78, n. 1, p. 244, doi. 10.1111/all.15490
By:
- Schedel, Michaela;
- Leach, Sonia M.;
- Strand, Matthew J.;
- Danhorn, Thomas;
- MacBeth, Morgan;
- Faino, Anna V.;
- Lynch, Anne M.;
- Winn, Virginia D.;
- Munoz, Lindsay L.;
- Forsberg, Shannon M.;
- Schwartz, David A.;
- Gelfand, Erwin W.;
- Hauk, Pia J.
Publication type:
Article
Regulation of Toll-like Receptor Signaling by the SF3a mRNA Splicing Complex.
Published in:
PLoS Genetics, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.pgen.1004932
By:
- O’Connor, Brian P.;
- Danhorn, Thomas;
- De Arras, Lesly;
- Flatley, Brenna R.;
- Marcus, Roland A.;
- Farias-Hesson, Eveline;
- Leach, Sonia M.;
- Alper, Scott
Publication type:
Article
Identifying and classifying goals for scientific knowledge.
Published in:
Bioinformatics Advances, 2021, v. 1, n. 1, p. 1, doi. 10.1093/bioadv/vbab012
By:
- Boguslav, Mayla R.;
- Salem, Nourah M.;
- White, Elizabeth K.;
- Leach, Sonia M.;
- Hunter, Lawrence E.
Publication type:
Article
Rationale and design of the prognostic transcriptomic signature in fibrotic hypersensitivity pneumonitis (PREDICT) study.
Published in:
ERJ Open Research, 2024, v. 10, n. 1, p. 1, doi. 10.1183/23120541.00625-2023
By:
- Fernández Pérez, Evans R.;
- Leach, Sonia M.;
- Vestal, Brian
Publication type:
Article
Whole Blood Gene Expression Profiling Predicts Severe Morbidity and Mortality in Cystic Fibrosis: A 5-Year Follow-Up Study.
Published in:
2018
By:
- Saavedra, Milene T.;
- Quon, Bradley S.;
- Faino, Anna;
- Caceres, Silvia M.;
- Poch, Katie R.;
- Sanders, Linda A.;
- Malcolm, Kenneth C.;
- Nichols, David P.;
- Sagel, Scott D.;
- Taylor-Cousar, Jennifer L.;
- Leach, Sonia M.;
- Strand, Matthew;
- Nick, Jerry A.
Publication type:
journal article
Bioinformatics-driven discovery of rational combination for overcoming EGFR-mutant lung cancer resistance to EGFR therapy.
Published in:
Bioinformatics, 2014, v. 30, n. 17, p. 2393, doi. 10.1093/bioinformatics/btu323
By:
- Kim, Jihye;
- Vasu, Vihas T.;
- Mishra, Rangnath;
- Singleton, Katherine R.;
- Yoo, Minjae;
- Leach, Sonia M.;
- Farias-Hesson, Eveline;
- Mason, Robert J.;
- Kang, Jaewoo;
- Ramamoorthy, Preveen;
- Kern, Jeffrey A.;
- Heasley, Lynn E.;
- Finigan, James H.;
- Tan, Aik Choon
Publication type:
Article
GATA2 regulates mast cell identity and responsiveness to antigenic stimulation by promoting chromatin remodeling at super-enhancers.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20766-0
By:
- Li, Yapeng;
- Gao, Junfeng;
- Kamran, Mohammad;
- Harmacek, Laura;
- Danhorn, Thomas;
- Leach, Sonia M.;
- O'Connor, Brian P.;
- Hagman, James R.;
- Huang, Hua
Publication type:
Article
Gene and metabolite time-course response to cigarette smoking in mouse lung and plasma.
Published in:
PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0178281
By:
- Miller, Mikaela A.;
- Danhorn, Thomas;
- Cruickshank-Quinn, Charmion I.;
- Leach, Sonia M.;
- Jacobson, Sean;
- Strand, Matthew J.;
- Reisdorph, Nichole A.;
- Bowler, Russell P.;
- Petrache, Irina;
- Kechris, Katerina
Publication type:
Article

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