Works by Laukens, Kris
Results: 87
tcrBLOSUM: an amino acid substitution matrix for sensitive alignment of distant epitope-specific TCRs.
- Published in:
- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae602
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- Publication type:
- Article
Analysis of Wilms' tumor protein 1 specific TCR repertoire in AML patients uncovers higher diversity in patients in remission than in relapsed.
- Published in:
- Annals of Hematology, 2025, v. 104, n. 1, p. 317, doi. 10.1007/s00277-024-05919-1
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- Publication type:
- Article
MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra.
- Published in:
- PLoS ONE, 2020, v. 15, n. 1, p. 1, doi. 10.1371/journal.pone.0226770
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- Publication type:
- Article
Cytokinin affinity purification and identification of a tobacco BY-2 adenosine kinase
- Published in:
- FEBS Letters, 2003, v. 533, p. 63, doi. 10.1016/S0014-5793(02)03750-X
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- Publication type:
- Article
InSourcerer: a high‐throughput method to search for unknown metabolite modifications by mass spectrometry.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2017, v. 31, n. 17, p. 1396, doi. 10.1002/rcm.7910
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- Publication type:
- Article
Diagnosing Viral Infections Through T-Cell Receptor Sequencing of Activated CD8<sup>+</sup> T Cells.
- Published in:
- Journal of Infectious Diseases, 2024, v. 229, n. 2, p. 507, doi. 10.1093/infdis/jiad430
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- Article
Flexible network reconstruction from relationaldatabases with Cytoscape and CytoSQL.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 360, doi. 10.1186/1471-2105-11-360
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- Publication type:
- Article
speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification.
- Published in:
- PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006018
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- Article
How deep learning influences workflows and roles in virtual surgical planning.
- Published in:
- Discover Health Systems, 2023, v. 2, n. 1, p. 1, doi. 10.1007/s44250-023-00041-x
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- Article
Proteomic Assessment of C57BL/6 Hippocampi after Non-Selective Pharmacological Inhibition of Nitric Oxide Synthase Activity: Implications of Seizure-like Neuronal Hyperexcitability Followed by Tauopathy.
- Published in:
- Biomedicines, 2022, v. 10, n. 8, p. N.PAG, doi. 10.3390/biomedicines10081772
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- Article
Fractionated irradiation of MCF7 breast cancer cells rewires a gene regulatory circuit towards a treatment‐resistant stemness phenotype.
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- Molecular Oncology, 2022, v. 16, n. 19, p. 3410, doi. 10.1002/1878-0261.13226
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- Article
Fast liquid chromatography coupled to electrospray tandem mass spectrometry peptide sequencing for cross-species protein identification.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2003, v. 17, n. 19, p. 2188, doi. 10.1002/rcm.1173
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- Publication type:
- Article
ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity.
- Published in:
- Bioinformatics, 2021, v. 37, n. 24, p. 4865, doi. 10.1093/bioinformatics/btab446
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- Publication type:
- Article
MILES: a Java tool to extract node-specific enriched subgraphs in biomolecular networks.
- Published in:
- Bioinformatics, 2020, v. 36, n. 6, p. 1978, doi. 10.1093/bioinformatics/btz849
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- Publication type:
- Article
On the viability of unsupervised T-cell receptor sequence clustering for epitope preference.
- Published in:
- Bioinformatics, 2019, v. 35, n. 9, p. 1461, doi. 10.1093/bioinformatics/bty821
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- Article
pBRIT: gene prioritization by correlating functional and phenotypic annotations through integrative data fusion.
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- Bioinformatics, 2018, v. 34, n. 13, p. 2254, doi. 10.1093/bioinformatics/bty079
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- Publication type:
- Article
sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets.
- Published in:
- Bioinformatics, 2017, v. 33, n. 12, p. 1902, doi. 10.1093/bioinformatics/btx076
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- Publication type:
- Article
Transcriptome profiling of HepG2 cells exposed to the flame retardant 9,10-dihydro-9-oxa-10-phosphaphenanthrene 10-oxide (DOPO).
- Published in:
- Toxicology Research, 2018, v. 7, n. 3, p. 492, doi. 10.1039/c8tx00006a
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- Article
IL-22-Activated MUC13 Impacts on Colonic Barrier Function through JAK1/STAT3, SNAI1/ZEB1 and ROCK2/MAPK Signaling.
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- Cells (2073-4409), 2023, v. 12, n. 9, p. 1224, doi. 10.3390/cells12091224
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- Publication type:
- Article
Viral Evolution and Immunology of SARS-CoV-2 in a Persistent Infection after Treatment with Rituximab.
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- Viruses (1999-4915), 2022, v. 14, n. 4, p. N.PAG, doi. 10.3390/v14040752
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- Publication type:
- Article
A targeted multi-omics approach reveals paraoxonase-1 as a determinant of obesity-associated fatty liver disease.
- Published in:
- Clinical Epigenetics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13148-021-01142-1
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- Article
Genome-Wide SNP Analysis Reveals Distinct Origins of Trypanosoma evansi and Trypanosoma equiperdum.
- Published in:
- Genome Biology & Evolution, 2017, v. 9, n. 8, p. 1990, doi. 10.1093/gbe/evx102
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- Publication type:
- Article
A machine-learning based model for automated recommendation of individualized treatment of rifampicin-resistant tuberculosis.
- Published in:
- PLoS ONE, 2024, v. 19, n. 9, p. 1, doi. 10.1371/journal.pone.0306101
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- Publication type:
- Article
Computational quality control tools for mass spectrometry proteomics.
- Published in:
- Proteomics, 2017, v. 17, n. 3/4, p. n/a, doi. 10.1002/pmic.201600159
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- Publication type:
- Article
Bioinformatics approaches for the functional interpretation of protein lists: From ontology term enrichment to network analysis.
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- Proteomics, 2015, v. 15, n. 5/6, p. 981, doi. 10.1002/pmic.201400296
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- Publication type:
- Article
Machine learning applications in proteomics research: How the past can boost the future.
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- Proteomics, 2014, v. 14, n. 4/5, p. 353, doi. 10.1002/pmic.201300289
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- Publication type:
- Article
2-D DIGE reveals changes in wheat xylanase inhibitor protein families due to Fusarium graminearum Δ Tri5 infection and grain development.
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- Proteomics, 2010, v. 10, n. 12, p. 2303, doi. 10.1002/pmic.200900493
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- Publication type:
- Article
A bioanalytical method for the proteome wide display and analysis of protein complexes from whole plant cell lysates.
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- Proteomics, 2009, v. 9, n. 5, p. 1416, doi. 10.1002/pmic.200990016
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- Publication type:
- Article
A bioanalytical method for the proteome wide display and analysis of protein complexes from whole plant cell lysates.
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- Proteomics, 2009, v. 9, n. 3, p. 598, doi. 10.1002/pmic.200800100
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- Publication type:
- Article
Banana (Musa spp.) as a model to study the meristem proteome: Acclimation to osmotic stress.
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- Proteomics, 2007, v. 7, n. 1, p. 92, doi. 10.1002/pmic.200600533
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- Article
In vitro assessment of hepatotoxicity by metabolomics: a review.
- Published in:
- Archives of Toxicology, 2018, v. 92, n. 10, p. 3007, doi. 10.1007/s00204-018-2286-9
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- Publication type:
- Article
Persistent T cell unresponsiveness associated with chronic visceral leishmaniasis in HIV-coinfected patients.
- Published in:
- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06225-2
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- Publication type:
- Article
The Absence of C-5 DNA Methylation in Leishmania donovani Allows DNA Enrichment from Complex Samples.
- Published in:
- Microorganisms, 2020, v. 8, n. 8, p. 1252, doi. 10.3390/microorganisms8081252
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- Article
Ectopic MicroRNA-150-5p Transcription Sensitizes Glucocorticoid Therapy Response in MM1S Multiple Myeloma Cells but Fails to Overcome Hormone Therapy Resistance in MM1R Cells.
- Published in:
- PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0113842
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- Publication type:
- Article
The radiosensitising effect of gemcitabine and its main metabolite dFdU under low oxygen conditions is in vitro not dependent on functional HIF-1 protein.
- Published in:
- BMC Cancer, 2014, v. 14, p. 1, doi. 10.1186/1471-2407-14-594
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- Publication type:
- Article
On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition.
- Published in:
- Immunogenetics, 2018, v. 70, n. 3, p. 159, doi. 10.1007/s00251-017-1023-5
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- Article
Immunological evasion of immediate-early varicella zoster virus proteins.
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- Immunogenetics, 2016, v. 68, n. 6/7, p. 483, doi. 10.1007/s00251-016-0911-4
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- Article
Erratum to: Immunological evasion of immediate-early varicella zoster virus proteins.
- Published in:
- 2016
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- Publication type:
- Erratum
The effect of local non‐thermal plasma therapy on the cancer‐immunity cycle in a melanoma mouse model.
- Published in:
- Bioengineering & Translational Medicine, 2022, v. 7, n. 3, p. 1, doi. 10.1002/btm2.10314
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- Publication type:
- Article
Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa318
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- Publication type:
- Article
A primer to frequent itemset mining for bioinformatics.
- Published in:
- Briefings in Bioinformatics, 2015, v. 16, n. 2, p. 216, doi. 10.1093/bib/bbt074
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- Publication type:
- Article
<sup>1</sup>H-NMR study of the metabolome of a moderately hypoxia-tolerant fish, the common carp (<i>Cyprinus carpio</i>)
- Published in:
- Metabolomics, 2013, v. 9, n. 6, p. 1216, doi. 10.1007/s11306-013-0540-y
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- Publication type:
- Article
H-NMR study of the metabolome of an exceptionally anoxia tolerant vertebrate, the crucian carp ( Carassius carassius).
- Published in:
- Metabolomics, 2013, v. 9, n. 2, p. 311, doi. 10.1007/s11306-012-0448-y
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- Publication type:
- Article
Machine learning‐based peptide‐spectrum match rescoring opens up the immunopeptidome.
- Published in:
- Proteomics, 2024, v. 24, n. 8, p. 1, doi. 10.1002/pmic.202300336
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- Publication type:
- Article
HLA-DRB1 Alleles Associated with Lower Leishmaniasis Susceptibility Share Common Amino Acid Polymorphisms and Epitope Binding Repertoires.
- Published in:
- Vaccines, 2021, v. 9, n. 3, p. 270, doi. 10.3390/vaccines9030270
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- Article
Visualizing the agreement of peptide assignments between different search engines.
- Published in:
- Journal of Mass Spectrometry, 2020, v. 55, n. 8, p. 1, doi. 10.1002/jms.4471
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- Article
Ferroptosis Induction in Multiple Myeloma Cells Triggers DNA Methylation and Histone Modification Changes Associated with Cellular Senescence.
- Published in:
- International Journal of Molecular Sciences, 2021, v. 22, n. 22, p. 12234, doi. 10.3390/ijms222212234
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- Publication type:
- Article
A treatment recommender clinical decision support system for personalized medicine: method development and proof-of-concept for drug resistant tuberculosis.
- Published in:
- 2022
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- Publication type:
- journal article
The radiosensitising effect of gemcitabine and its main metabolite dFdU under low oxygen conditions is in vitro not dependent on functional HIF-1 protein.
- Published in:
- 2014
- By:
- Publication type:
- journal article
Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48322-0
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- Publication type:
- Article