Works by Lashin, Sergey A.

Results: 30

Evolutionary Transcriptomics of Cancer Development.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5041, doi. 10.3390/ijms26115041

By:

Ivanov, Roman;
Afonnikov, Dmitry;
Matushkin, Yury;
Lashin, Sergey

Publication type:

Article

AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs.

Published in:

Bioinformatics, 2017, v. 33, n. 6, p. 923, doi. 10.1093/bioinformatics/btw736

By:

Kochetov, Alex V.;
Allmer, Jens;
Klimenko, Alexandra I.;
Zuraev, Bulat S.;
Matushkin, Yury G.;
Lashin, Sergey A.

Publication type:

Article

Analysis of the Effects of the Vrn-1 and Ppd-1 Alleles on Adaptive and Agronomic Traits in Common Wheat (Triticum aestivum L.).

Published in:

Plants (2223-7747), 2024, v. 13, n. 11, p. 1453, doi. 10.3390/plants13111453

By:

Plotnikov, Kirill O.;
Klimenko, Alexandra I.;
Ovchinnikova, Ekaterina S.;
Lashin, Sergey A.;
Goncharov, Nikolay P.

Publication type:

Article

Haploid evolutionary constructor: New features and further challenges.

Published in:

In Silico Biology, 2012, v. 11, n. 3/4, p. 125, doi. 10.3233/isb-2012-0447

By:

Lashin, Sergey A.;
Matushkin, Yury G.

Publication type:

Article

Simulation of Coevolution in Community by Using the "Evolutionary Constructor" Program.

Published in:

In Silico Biology, 2007, v. 7, n. 3, p. 261

By:

Lashin, Sergey A.;
Suslov, Valentin V.;
Kolchanov, Nikolay A.;
Matushkin, Yury G.

Publication type:

Article

Fold-Change-Specific Enrichment Analysis (FSEA): Quantification of Transcriptional Response Magnitude for Functional Gene Groups.

Published in:

Genes, 2020, v. 11, n. 4, p. 1, doi. 10.3390/genes11040434

By:

Wiebe, Daniil S.;
Omelyanchuk, Nadezhda A.;
Mukhin, Aleksei M.;
Grosse, Ivo;
Lashin, Sergey A.;
Zemlyanskaya, Elena V.;
Mironova, Victoria V.

Publication type:

Article

Phylostratigraphic Analysis Shows the Earliest Origination of the Abiotic Stress Associated Genes in A. thaliana.

Published in:

Genes, 2019, v. 10, n. 12, p. 963, doi. 10.3390/genes10120963

By:

Mustafin, Zakhar S.;
Zamyatin, Vladimir I.;
Konstantinov, Dmitrii K.;
Doroshkov, Aleksej V.;
Lashin, Sergey A.;
Afonnikov, Dmitry A.

Publication type:

Article

Reconstruction and Analysis of Gene Networks of Human Neurotransmitter Systems Reveal Genes with Contentious Manifestation for Anxiety, Depression, and Intellectual Disabilities.

Published in:

Genes, 2019, v. 10, n. 9, p. 699, doi. 10.3390/genes10090699

By:

Ivanov, Roman;
Zamyatin, Vladimir;
Klimenko, Alexandra;
Matushkin, Yury;
Savostyanov, Alexander;
Lashin, Sergey

Publication type:

Article

Antitumor efficacy of multi-target in situ vaccinations with CpG oligodeoxynucleotides, anti-OX40, anti-PD1 antibodies, and aptamers.

Published in:

Journal of Biomedical Research, 2023, v. 37, n. 3, p. 194, doi. 10.7555/JBR.36.20220052

By:

Proskurina, Anastasia S.;
Ruzanova, Vera S.;
Ritter, Genrikh S.;
Efremov, Yaroslav R.;
Mustafin, Zakhar S.;
Lashin, Sergey A.;
Burakova, Ekaterina A.;
Fokina, Alesya A.;
Zatsepin, Timofei S.;
Stetsenko, Dmitry A.;
Leplina, Olga Y.;
Ostanin, Alexandr A.;
Chernykh, Elena R.;
Bogachev, Sergey S.

Publication type:

Article

A New Visualization and Analysis Method for a Convolved Representation of Mass Computational Experiments with Biological Models.

Published in:

Mathematics (2227-7390), 2023, v. 11, n. 12, p. 2783, doi. 10.3390/math11122783

By:

Klimenko, Alexandra I.;
Vorobeva, Diana A.;
Lashin, Sergey A.

Publication type:

Article

Algorithm for the Reconstruction of Mathematical Frame Models of Bacterial Transcription Regulation.

Published in:

Mathematics (2227-7390), 2022, v. 10, n. 23, p. 4480, doi. 10.3390/math10234480

By:

Lakhova, Tatiana N.;
Kazantsev, Fedor V.;
Mukhin, Aleksey M.;
Kolchanov, Nikolay A.;
Matushkin, Yury G.;
Lashin, Sergey A.

Publication type:

Article

Bioinformatic Analysis Reveals the Role of Translation Elongation Efficiency Optimisation in the Evolution of Ralstonia Genus.

Published in:

Biology (2079-7737), 2023, v. 12, n. 10, p. 1338, doi. 10.3390/biology12101338

By:

Korenskaia, Aleksandra Y.;
Matushkin, Yury G.;
Mustafin, Zakhar S.;
Lashin, Sergey A.;
Klimenko, Alexandra I.

Publication type:

Article

Trait-Based Method of Quantitative Assessment of Ecological Functional Groups in the Human Intestinal Microbiome.

Published in:

Biology (2079-7737), 2023, v. 12, n. 1, p. 115, doi. 10.3390/biology12010115

By:

Kropochev, Andrew I.;
Lashin, Sergey A.;
Matushkin, Yury G.;
Klimenko, Alexandra I.

Publication type:

Article

Agent-Based Modeling of Autosomal Recessive Deafness 1A (DFNB1A) Prevalence with Regard to Intensity of Selection Pressure in Isolated Human Population.

Published in:

Biology (2079-7737), 2022, v. 11, n. 2, p. 257, doi. 10.3390/biology11020257

By:

Romanov, Georgii P.;
Smirnova, Anna A.;
Zamyatin, Vladimir I.;
Mukhin, Aleksey M.;
Kazantsev, Fedor V.;
Pshennikova, Vera G.;
Teryutin, Fedor M.;
Solovyev, Aisen V.;
Fedorova, Sardana A.;
Posukh, Olga L.;
Lashin, Sergey A.;
Barashkov, Nikolay A.

Publication type:

Article

Leave or Stay: Simulating Motility and Fitness of Microorganisms in Dynamic Aquatic Ecosystems.

Published in:

Biology (2079-7737), 2021, v. 10, n. 10, p. 1019, doi. 10.3390/biology10101019

By:

Klimenko, Alexandra;
Matushkin, Yury;
Kolchanov, Nikolay;
Lashin, Sergey

Publication type:

Article

Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1427-5

By:

Mustafin, Zakhar Sergeevich;
Lashin, Sergey Alexandrovich;
Matushkin, Yury Georgievich;
Gunbin, Konstantin Vladimirovich;
Afonnikov, Dmitry Arkadievich

Publication type:

Article

Biocontrol Potential of the New Codling Moth Granulovirus (CpGV) Strains.

Published in:

Microorganisms, 2024, v. 12, n. 10, p. 1991, doi. 10.3390/microorganisms12101991

By:

Tsygichko, Aleksandra A.;
Asaturova, Anzhela M.;
Lakhova, Tatiana N.;
Klimenko, Alexandra I.;
Lashin, Sergey A.;
Vasiliev, Gennady V.

Publication type:

Article

The Effect of Meditation on Comprehension of Statements About One-Self and Others: A Pilot ERP and Behavioral Study.

Published in:

Frontiers in Human Neuroscience, 2020, v. 13, p. 1, doi. 10.3389/fnhum.2019.00437

By:

Savostyanov, Alexander;
Tamozhnikov, Sergey;
Bocharov, Andrey;
Saprygin, Alexander;
Matushkin, Yuriy;
Lashin, Sergey;
Kolpakova, Galina;
Sudobin, Klimenty;
Knyazev, Gennady

Publication type:

Article

Bacteriophages affect evolution of bacterial communities in spatially distributed habitats: a simulation study.

Published in:

BMC Microbiology, 2016, v. 16, p. 31, doi. 10.1186/s12866-015-0620-4

By:

Klimenko, Alexandra Igorevna;
Matushkin, Yury Georgievich;
Kolchanov, Nikolay Alexandrovich;
Lashin, Sergey Alexandrovich

Publication type:

Article

ICBrainDB: An Integrated Database for Finding Associations between Genetic Factors and EEG Markers of Depressive Disorders.

Published in:

Journal of Personalized Medicine, 2022, v. 12, n. 1, p. 53, doi. 10.3390/jpm12010053

By:

Ivanov, Roman;
Kazantsev, Fedor;
Zavarzin, Evgeny;
Klimenko, Alexandra;
Milakhina, Natalya;
Matushkin, Yury G.;
Savostyanov, Alexander;
Lashin, Sergey

Publication type:

Article

Bioinformatic Assessment of Factors Affecting the Correlation between Protein Abundance and Elongation Efficiency in Prokaryotes.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 19, p. 11996, doi. 10.3390/ijms231911996

By:

Korenskaia, Aleksandra E.;
Matushkin, Yury G.;
Lashin, Sergey A.;
Klimenko, Alexandra I.

Publication type:

Article

Web-MCOT Server for Motif Co-Occurrence Search in ChIP-Seq Data.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 16, p. 8981, doi. 10.3390/ijms23168981

By:

Levitsky, Victor G.;
Mukhin, Alexey M.;
Oshchepkov, Dmitry Yu.;
Zemlyanskaya, Elena V.;
Lashin, Sergey A.

Publication type:

Article

Abnormal mTOR Activity in Pediatric Autoimmune Neuropsychiatric and MIA-Associated Autism Spectrum Disorders.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 2, p. 967, doi. 10.3390/ijms23020967

By:

Trifonova, Ekaterina A.;
Mustafin, Zakhar S.;
Lashin, Sergey A.;
Kochetov, Alex V.

Publication type:

Article

Do Autism Spectrum and Autoimmune Disorders Share Predisposition Gene Signature Due to mTOR Signaling Pathway Controlling Expression?

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 10, p. 5248, doi. 10.3390/ijms22105248

By:

Trifonova, Ekaterina A.;
Klimenko, Alexandra I.;
Mustafin, Zakhar S.;
Lashin, Sergey A.;
Kochetov, Alex V.;
Goncharova, Elena A.;
Yu, Jane J.

Publication type:

Article

The mTOR Signaling Pathway Activity and Vitamin D Availability Control the Expression of Most Autism Predisposition Genes.

Published in:

International Journal of Molecular Sciences, 2019, v. 20, n. 24, p. 6332, doi. 10.3390/ijms20246332

By:

Trifonova, Ekaterina A.;
Klimenko, Alexandra I.;
Mustafin, Zakhar S.;
Lashin, Sergey A.;
Kochetov, Alex V.

Publication type:

Article

MIGREW: database on molecular identification of genes for resistance in wheat.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 27, doi. 10.1186/s12859-018-2569-4

By:

Kazantsev, Fedor V.;
Skolotneva, Ekaterina S.;
Kelbin, Vasiliy N.;
Salina, Elena A.;
Lashin, Sergey A.

Publication type:

Article

MAMMOTh: A new database for curated mathematical models of biomolecular systems.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 1, p. -1, doi. 10.1142/S0219720017400108

By:

Kazantsev, Fedor;
Akberdin, Ilya;
Lashin, Sergey;
Ree, Natalia;
Timonov, Vladimir;
Ratushny, Alexander;
Khlebodarova, Tamara;
Likhoshvai, Vitaly

Publication type:

Article

COMPARATIVE MODELING OF COEVOLUTION IN COMMUNITIES OF UNICELLULAR ORGANISMS:: ADAPTABILITY AND BIODIVERSITY.

Published in:

Journal of Bioinformatics & Computational Biology, 2010, v. 8, n. 3, p. 627, doi. 10.1142/S0219720010004653

By:

LASHIN, SERGEY A.;
SUSLOV, VALENTIN V.;
MATUSHKIN, YURI G.

Publication type:

Article

A new approach to estimating the prevalence of hereditary hearing loss: An analysis of the distribution of sign language users based on census data in Russia.

Published in:

PLoS ONE, 2020, v. 15, n. 11, p. 1, doi. 10.1371/journal.pone.0242219

By:

Romanov, Georgii P.;
Pshennikova, Vera G.;
Lashin, Sergey A.;
Solovyev, Aisen V.;
Teryutin, Fedor M.;
Cherdonova, Aleksandra M.;
Borisova, Tuyara V.;
Sazonov, Nikolay N.;
Khusnutdinova, Elza K.;
Posukh, Olga L.;
Fedorova, Sardana A.;
Barashkov, Nikolay A.

Publication type:

Article

Modeling evolution of spatially distributed bacterial communities: a simulation with the haploid evolutionary constructor.

Published in:

BMC Evolutionary Biology, 2015, v. 15, p. 1, doi. 10.1186/1471-2148-15-S1-S3

By:

Klimenkoa, Alexandra Igorevna;
Matushkin, Yury Georgievich;
Kolchanov, Nikolay Alexandrovich;
Lashin, Sergey Alexandrovich

Publication type:

Article