Found: 25

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  • Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression.

    Published in:
    2011
    By:
    • Wartman, Lukas D.;
    • Larson, David E.;
    • Zhifu Xiang;
    • Li Ding;
    • Ken Chen;
    • Ling Lin;
    • Cahan, Patrick;
    • Klco, Jeffery M.;
    • Welch, John S.;
    • Cheng Li;
    • Payton, Jacqueline E.;
    • Uy, Geoffrey L.;
    • Varghese, Nobish;
    • Ries, Rhonda E.;
    • Hoock, Mieke;
    • Koboldt, Daniel C.;
    • McLellan, Michael D.;
    • Schmidt, Heather;
    • Fulton, Robert S.;
    • Abbott, Rachel M.
    Publication type:
    journal article

  • Risk for Colorectal Adenocarcinoma in Pernicious Anemia.

    Published in:
    Annals of Internal Medicine, 1989, v. 111, n. 9, p. 738, doi. 10.7326/0003-4819-111-9-738
    By:
    • Talley, Nicholas J.;
    • Chute, Christopher G.;
    • Larson, David E.;
    • Epstein, Robert;
    • Lydick, Eva G.;
    • Melton III, L. Joseph
    Publication type:
    Article

  • Antibiotic Prophylaxis for Percutaneous Endoscopic Gastrotomy.

    Published in:
    Annals of Internal Medicine, 1987, v. 107, n. 6, p. 824, doi. 10.7326/0003-4819-107-6-824
    By:
    • Jain, Naresh K.;
    • Larson, David E.;
    • Schroeder, Kenneth W.;
    • Burton, Duane D.;
    • Cannon, Kevin P.;
    • Thompson, Rodney L.;
    • Dimagno, Eugene P.
    Publication type:
    Article

  • Systemic lupus erythematosus developing in patients with primary biliary cirrhosis.

    Published in:
    1984
    By:
    • Hall, Stephen;
    • Axelsen, Paul H.;
    • Larson, David E.;
    • Bunch, Thomas W.;
    • Hall, S;
    • Axelsen, P H;
    • Larson, D E;
    • Bunch, T W
    Publication type:
    journal article

  • Identification of a rare coding variant in complement 3 associated with age-related macular degeneration.

    Published in:
    Nature Genetics, 2013, v. 45, n. 11, p. 1375, doi. 10.1038/ng.2758
    By:
    • Zhan, Xiaowei;
    • Larson, David E;
    • Wang, Chaolong;
    • Koboldt, Daniel C;
    • Sergeev, Yuri V;
    • Fulton, Robert S;
    • Fulton, Lucinda L;
    • Fronick, Catrina C;
    • Branham, Kari E;
    • Bragg-Gresham, Jennifer;
    • Jun, Goo;
    • Hu, Youna;
    • Kang, Hyun Min;
    • Liu, Dajiang;
    • Othman, Mohammad;
    • Brooks, Matthew;
    • Ratnapriya, Rinki;
    • Boleda, Alexis;
    • Grassmann, Felix;
    • von Strachwitz, Claudia
    Publication type:
    Article

  • Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes.

    Published in:
    Nature Genetics, 2012, v. 44, n. 1, p. 53, doi. 10.1038/ng.1031
    By:
    • Graubert, Timothy A;
    • Shen, Dong;
    • Ding, Li;
    • Okeyo-Owuor, Theresa;
    • Lunn, Cara L;
    • Shao, Jin;
    • Krysiak, Kilannin;
    • Harris, Christopher C;
    • Koboldt, Daniel C;
    • Larson, David E;
    • McLellan, Michael D;
    • Dooling, David J;
    • Abbott, Rachel M;
    • Fulton, Robert S;
    • Schmidt, Heather;
    • Kalicki-Veizer, Joelle;
    • O'Laughlin, Michelle;
    • Grillot, Marcus;
    • Baty, Jack;
    • Heath, Sharon
    Publication type:
    Article

  • DGIdb: mining the druggable genome.

    Published in:
    Nature Methods, 2013, v. 10, n. 12, p. 1209, doi. 10.1038/nmeth.2689
    By:
    • Griffith, Malachi;
    • Griffith, Obi L;
    • Coffman, Adam C;
    • Weible, James V;
    • McMichael, Josh F;
    • Spies, Nicholas C;
    • Koval, James;
    • Das, Indraniel;
    • Callaway, Matthew B;
    • Eldred, James M;
    • Miller, Christopher A;
    • Subramanian, Janakiraman;
    • Govindan, Ramaswamy;
    • Kumar, Runjun D;
    • Bose, Ron;
    • Ding, Li;
    • Walker, Jason R;
    • Larson, David E;
    • Dooling, David J;
    • Smith, Scott M
    Publication type:
    Article

  • BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.

    Published in:
    Nature Methods, 2009, v. 6, n. 9, p. 677, doi. 10.1038/nmeth.1363
    By:
    • Chen, Ken;
    • Wallis, John W.;
    • McLellan, Michael D.;
    • Larson, David E.;
    • Kalicki, Joelle M.;
    • Pohl, Craig S.;
    • McGrath, Sean D.;
    • Wendl, Michael C.;
    • Qunyuan Zhang;
    • Locke, Devin P.;
    • Xiaoqi Shi;
    • Fulton, Robert S.;
    • Ley, Timothy J.;
    • Wilson, Richard K.;
    • Li Ding;
    • Mardis, Elaine R.
    Publication type:
    Article

  • Dissection of functional domains of the polar localization factor PodJ in Caulobacter crescentus.

    Published in:
    Molecular Microbiology, 2006, v. 59, n. 1, p. 301, doi. 10.1111/j.1365-2958.2005.04935.x
    By:
    • Lawler, Melanie L.;
    • Larson, David E.;
    • Hinz, Aaron J.;
    • Klein, David;
    • Brun, Yves V.
    Publication type:
    Article

  • The Caulobacter crescentus polar organelle development protein PodJ is differentially localized and is required for polar targeting of the PleC development regulator.

    Published in:
    Molecular Microbiology, 2003, v. 47, n. 4, p. 929, doi. 10.1046/j.1365-2958.2003.03349.x
    By:
    • Hinz, Aaron J.;
    • Larson, David E.;
    • Smith, Christopher S.;
    • Brun, Yves V.
    Publication type:
    Article

  • Genome remodelling in a basal-like breast cancer metastasis and xenograft.

    Published in:
    Nature, 2010, v. 464, n. 7291, p. 999, doi. 10.1038/nature08989
    By:
    • Li Ding;
    • Ellis, Matthew J.;
    • Shunqiang Li;
    • Larson, David E.;
    • Ken Chen;
    • Wallis, John W.;
    • Harris, Christopher C.;
    • McLellan, Michael D.;
    • Fulton, Robert S.;
    • Fulton, Lucinda L.;
    • Abbott, Rachel M.;
    • Hoog, Jeremy;
    • Dooling, David J.;
    • Koboldt, Daniel C.;
    • Schmidt, Heather;
    • Kalicki, Joelle;
    • Qunyuan Zhang;
    • Lei Chen;
    • Ling Lin;
    • Wendl, Michael C.
    Publication type:
    Article

  • DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome.

    Published in:
    Nature, 2008, v. 456, n. 7218, p. 66, doi. 10.1038/nature07485
    By:
    • Ley, Timothy J.;
    • Mardis, Elaine R.;
    • Ding, Li;
    • Fulton, Bob;
    • McLellan, Michael D.;
    • Chen, Ken;
    • Dooling, David;
    • Dunford-Shore, Brian H.;
    • McGrath, Sean;
    • Hickenbotham, Matthew;
    • Cook, Lisa;
    • Abbott, Rachel;
    • Larson, David E.;
    • Koboldt, Dan C.;
    • Pohl, Craig;
    • Smith, Scott;
    • Hawkins, Amy;
    • Abbott, Scott;
    • Locke, Devin;
    • Hillier, LaDeana W.
    Publication type:
    Article

  • Somatic mutations affect key pathways in lung adenocarcinoma.

    Published in:
    Nature, 2008, v. 455, n. 7216, p. 1069, doi. 10.1038/nature07423
    By:
    • Li Ding;
    • Getz, Gad;
    • Wheeler, David A.;
    • Mardis, Elaine R.;
    • McLellan, Michael D.;
    • Cibulskis, Kristian;
    • Sougnez, Carrie;
    • Greulich, Heidi;
    • Muzny, Donna M.;
    • Morgan, Margaret B.;
    • Fulton, Lucinda;
    • Fulton, Robert S.;
    • Qunyuan Zhang;
    • Wendl, Michael C.;
    • Lawrence, Michael S.;
    • Larson, David E.;
    • Chen, Ken;
    • Dooling, David J.;
    • Sabo, Aniko;
    • Hawes, Alicia C.
    Publication type:
    Article

  • Computer Simulation of Cellular Patterning Within the Drosophila Pupal Eye.

    Published in:
    PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000841
    By:
    • Larson, David E.;
    • Johnson, Ruth I.;
    • Swat, Maciej;
    • Cordero, Julia B.;
    • Glazier, James A.;
    • Cagan, Ross L.
    Publication type:
    Article

  • Aromatase inhibition remodels the clonal architecture of estrogen-receptor-positive breast cancers.

    Published in:
    Nature Communications, 2016, v. 7, n. 8, p. 12498, doi. 10.1038/ncomms12498
    By:
    • Miller, Christopher A.;
    • Gindin, Yevgeniy;
    • Lu, Charles;
    • Griffith, Obi L;
    • Griffith, Malachi;
    • Shen, Dong;
    • Hoog, Jeremy;
    • Li, Tiandao;
    • Larson, David E.;
    • Watson, Mark;
    • Davies, Sherri R;
    • Hunt, Kelly;
    • Suman, Vera J.;
    • Snider, Jacqueline;
    • Walsh, Thomas;
    • Colditz, Graham A.;
    • DeSchryver, Katherine;
    • Wilson, Richard K.;
    • Mardis, Elaine R.;
    • Ellis, Matthew J.
    Publication type:
    Article

  • Integrated analysis of germline and somatic variants in ovarian cancer.

    Published in:
    Nature Communications, 2014, v. 5, n. 1, p. 3156, doi. 10.1038/ncomms4156
    By:
    • Kanchi, Krishna L.;
    • Johnson, Kimberly J.;
    • Lu, Charles;
    • McLellan, Michael D.;
    • Leiserson, Mark D. M.;
    • Wendl, Michael C.;
    • Zhang, Qunyuan;
    • Koboldt, Daniel C.;
    • Xie, Mingchao;
    • Kandoth, Cyriac;
    • McMichael, Joshua F.;
    • Wyczalkowski, Matthew A.;
    • Larson, David E.;
    • Schmidt, Heather K.;
    • Miller, Christopher A.;
    • Fulton, Robert S.;
    • Spellman, Paul T.;
    • Mardis, Elaine R.;
    • Druley, Todd E.;
    • Graubert, Timothy A.
    Publication type:
    Article

  • Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing.

    Published in:
    Nature, 2012, v. 481, n. 7382, p. 506, doi. 10.1038/nature10738
    By:
    • Ding, Li;
    • Ley, Timothy J.;
    • Larson, David E.;
    • Miller, Christopher A.;
    • Koboldt, Daniel C.;
    • Welch, John S.;
    • Ritchey, Julie K.;
    • Young, Margaret A.;
    • Lamprecht, Tamara;
    • McLellan, Michael D.;
    • McMichael, Joshua F.;
    • Wallis, John W.;
    • Lu, Charles;
    • Shen, Dong;
    • Harris, Christopher C.;
    • Dooling, David J.;
    • Fulton, Robert S.;
    • Fulton, Lucinda L.;
    • Chen, Ken;
    • Schmidt, Heather
    Publication type:
    Article

  • Brief Report: The Role of Rare Protein-Coding Variants in Anti-Tumor Necrosis Factor Treatment Response in Rheumatoid Arthritis.

    Published in:
    Arthritis & Rheumatology, 2017, v. 69, n. 4, p. 735, doi. 10.1002/art.39966
    By:
    • Cui, Jing;
    • Diogo, Dorothee;
    • Stahl, Eli A.;
    • Canhao, Helena;
    • Mariette, Xavier;
    • Greenberg, Jeffrey D.;
    • Okada, Yukinori;
    • Pappas, Dimitrios A.;
    • Fulton, Robert S.;
    • Tak, Paul P.;
    • Nurmohamed, Michael T.;
    • Lee, Annette;
    • Larson, David E.;
    • Kurreeman, Fina;
    • Deluca, Tracie L.;
    • O'Laughlin, Michelle;
    • Fronick, Catrina C.;
    • Fulton, Lucinda L.;
    • Mardis, Elaine R.;
    • van der Horst‐Bruinsma, Irene E.
    Publication type:
    Article

  • Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06159-4
    By:
    • Regier, Allison A.;
    • Farjoun, Yossi;
    • Larson, David E.;
    • Krasheninina, Olga;
    • Kang, Hyun Min;
    • Howrigan, Daniel P.;
    • Chen, Bo-Juen;
    • Kher, Manisha;
    • Banks, Eric;
    • Ames, Darren C.;
    • English, Adam C.;
    • Li, Heng;
    • Xing, Jinchuan;
    • Zhang, Yeting;
    • Matise, Tara;
    • Abecasis, Goncalo R.;
    • Salerno, Will;
    • Zody, Michael C.;
    • Neale, Benjamin M.;
    • Hall, Ira M.
    Publication type:
    Article

  • Re-sequencing Expands Our Understanding of the Phenotypic Impact of Variants at GWAS Loci.

    Published in:
    PLoS Genetics, 2014, v. 10, n. 1, p. 1, doi. 10.1371/journal.pgen.1004147
    By:
    • Service, Susan K.;
    • Teslovich, Tanya M.;
    • Fuchsberger, Christian;
    • Ramensky, Vasily;
    • Yajnik, Pranav;
    • Koboldt, Daniel C.;
    • Larson, David E.;
    • Zhang, Qunyuan;
    • Lin, Ling;
    • Welch, Ryan;
    • Ding, Li;
    • McLellan, Michael D.;
    • O'Laughlin, Michele;
    • Fronick, Catrina;
    • Fulton, Lucinda L.;
    • Magrini, Vincent;
    • Swift, Amy;
    • Elliott, Paul;
    • Jarvelin, Marjo-Riitta;
    • Kaakinen, Marika
    Publication type:
    Article

  • Use of Whole-Genome Sequencing to Diagnose a Cryptic Fusion Oncogene.

    Published in:
    2011
    By:
    • Welch, John S.;
    • Westervelt, Peter;
    • Li Ding;
    • Larson, David E.;
    • Klco, Jeffery M.;
    • Kulkarni, Shashikant;
    • Wallis, John;
    • Chen, Ken;
    • Payton, Jacqueline E.;
    • Fulton, Robert S.;
    • Veizer, Joelle;
    • Schmidt, Heather;
    • Vickery, Tammi L.;
    • Heath, Sharon;
    • Watson, Mark A.;
    • Tomasson, Michael H.;
    • Link, Daniel C.;
    • Graubert, Timothy A.;
    • DiPersio, John F.;
    • Mardis, Elaine R.
    Publication type:
    Case Study

  • svtools: population-scale analysis of structural variation.

    Published in:
    Bioinformatics, 2019, v. 35, n. 22, p. 4782, doi. 10.1093/bioinformatics/btz492
    By:
    • Larson, David E;
    • Abel, Haley J;
    • Chiang, Colby;
    • Badve, Abhijit;
    • Das, Indraniel;
    • Eldred, James M;
    • Layer, Ryan M;
    • Hall, Ira M
    Publication type:
    Article

  • SomaticSniper: identification of somatic point mutations in whole genome sequencing data.

    Published in:
    Bioinformatics, 2012, v. 28, n. 3, p. 311, doi. 10.1093/bioinformatics/btr665
    By:
    • Larson, David E.;
    • Harris, Christopher C.;
    • Chen, Ken;
    • Koboldt, Daniel C.;
    • Abbott, Travis E.;
    • Dooling, David J.;
    • Ley, Timothy J.;
    • Mardis, Elaine R.;
    • Wilson, Richard K.;
    • Ding, Li
    Publication type:
    Article

  • CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data.

    Published in:
    Bioinformatics, 2010, v. 26, n. 4, p. 464, doi. 10.1093/bioinformatics/btp708
    By:
    • Qunyuan Zhang;
    • Ding, Li;
    • Larson, David E.;
    • Koboldt, Daniel C.;
    • McLellan, Michael D.;
    • Chen, Ken;
    • Xiaoqi Shi;
    • Kraja, Aldi;
    • Mardis, Elaine R.;
    • Wilson, Richard K.;
    • Borecki, Ingrid B.;
    • Province, Michael A.
    Publication type:
    Article

  • VarScan: variant detection in massively parallel sequencing of individual and pooled samples.

    Published in:
    Bioinformatics, 2009, v. 25, n. 17, p. 2283, doi. 10.1093/bioinformatics/btp373
    By:
    • Koboldt, Daniel C.;
    • Chen, Ken;
    • Wylie, Todd;
    • Larson, David E.;
    • McLellan, Michael D.;
    • Mardis, Elaine R.;
    • Weinstock, George M.;
    • Wilson, Richard K.;
    • Li Ding
    Publication type:
    Article