Works by Lapidus, Alla

Results: 111
    1

    Complete genome sequence of Jiangella gansuensis strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus Jiangella and source of new antibiotic compounds.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6
    By:
    • Jian-Yu Jiao;
    • Carro, Lorena;
    • Lan Liu;
    • Xiao-Yang Gao;
    • Xiao-Tong Zhang;
    • Hozzein, Wael N.;
    • Lapidus, Alla;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Hadjithomas, Michalis;
    • Ivanova, Natalia N.;
    • Göker, Markus;
    • Pillay, Manoj;
    • Eisen, Jonathan A.;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
    2
    3

    Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0194-2
    By:
    • Anderson, Iain J.;
    • DasSarma, Priya;
    • Lucas, Susan;
    • Copeland, Alex;
    • Lapidus, Alla;
    • Del Rio, Tijana Glavina;
    • Tice, Hope;
    • Dalin, Eileen;
    • Bruce, David C.;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Sims, David;
    • Brettin, Thomas S.;
    • Detter, John C.;
    • Han, Cliff S.;
    • Larimer, Frank;
    • Hauser, Loren;
    • Land, Miriam;
    • Ivanova, Natalia;
    • Richardson, Paul
    Publication type:
    Article
    4
    5

    High-quality draft genome sequence of Flavobacterium suncheonense GH29-5<sup>T</sup> (DSM 17707<sup>T</sup>) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5<sup>T</sup>.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
    By:
    • Tashkandy, Nisreen;
    • Sabban, Sari;
    • Fakieh, Mohammad;
    • Meier-Kolthoff, Jan P.;
    • Sixing Huang;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Baeshen, Mohammed N.;
    • Baeshen, Nabih A.;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pillay, Manoj;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
    6

    Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050<sup>T</sup> (DSM 19838<sup>T</sup>) and Gramella portivictoriae UST040801-001<sup>T</sup> (DSM 23547<sup>T</sup>), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9
    By:
    • Panschin, Irina;
    • Sixing Huang;
    • Meier-Kolthoff, Jan P.;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Verbarg, Susanne;
    • Lapidus, Alla;
    • Han, James;
    • Trong, Stephan;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    7

    Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x
    By:
    • Kappler, Ulrike;
    • Davenport, Karen;
    • Beatson, Scott;
    • Lapidus, Alla;
    • Pan, Chongle;
    • Han, Cliff;
    • del Carmen Montero-Calasanz, Maria;
    • Land, Miriam;
    • Hauser, Loren;
    • Rohde, Manfred;
    • Göker, Markus;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    8
    9

    Complete genome sequence of Methanospirillum hungatei type strain JF1.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0124-8
    By:
    • Gunsalus, Robert;
    • Cook, Lauren;
    • Crable, Bryan;
    • Rohlin, Lars;
    • McDonald, Erin;
    • Mouttaki, Housna;
    • Sieber, Jessica;
    • Poweleit, Nicole;
    • Zhou, Hong;
    • Lapidus, Alla;
    • Daligault, Hajnalka;
    • Land, Miriam;
    • Gilna, Paul;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Culley, David;
    • McInerney, Michael
    Publication type:
    Article
    10
    11
    12

    High quality draft genome sequence of Meganema perideroedes str. Gr1<sup>T</sup> and a proposal for its reclassification to the family Meganemaceae fam. nov.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0013-1
    By:
    • McIlroy, Simon J.;
    • Lapidus, Alla;
    • Thomsen, Trine R.;
    • Han, James;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor;
    • Verbarg, Susanne;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Nielsen, Per H.
    Publication type:
    Article
    13

    High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7<sup>T</sup>, and emended description of the genus Halotalea.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7
    By:
    • Ntougias, Spyridon;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor M.;
    • Klenk, Hans-Peter;
    • Woyke, Tanja;
    • Fasseas, Constantinos;
    • Kyrpides, Nikos C.;
    • Zervakis, Georgios I.
    Publication type:
    Article
    14

    Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0041-x
    By:
    • Shetty, Ameesha R.;
    • de Gannes, Vidya;
    • Obi, Chioma C.;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Jan-Fang Cheng;
    • Goodwin, Lynne A.;
    • Pitluck, Samuel;
    • Peters, Linda;
    • Mikhailova, Natalia;
    • Teshima, Hazuki;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Land, Miriam;
    • Hauser, Loren J.;
    • Kyrpides, Nikos;
    • Ivanova, Natalia;
    • Pagani, Ioanna;
    • Chain, Patrick S. G.;
    • Denef, Vincent J
    Publication type:
    Article
    15
    16

    High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884<sup>T</sup>) isolated from a Chironomus sp. egg mass.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4
    By:
    • Laviad, Sivan;
    • Lapidus, Alla;
    • Han, James;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Lang, Elke;
    • Rohde, Manfred;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
    17

    High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1<sup>T</sup> (DSM 17521<sup>T</sup>) isolated from muddy waters of a drainage system in Chandigarh, India.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8
    By:
    • Mukherjee, Supratim;
    • Lapidus, Alla;
    • Shapiro, Nicole;
    • Jan-Fang Cheng;
    • Han, James;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Amy Chen;
    • Palaniappan, Krishna;
    • Spring, Stefan;
    • Göker, Markus;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Tindall, Brian J.;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Pati, Amrita
    Publication type:
    Article
    18

    Draft genome sequence of Halomonas lutea strain YIM 91125<sup>T</sup> (DSM 23508<sup>T</sup>) isolated from the alkaline Lake Ebinur in Northwest China.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1
    By:
    • Gao, Xiao-Yang;
    • Zhi, Xiao-Yang;
    • Li, Hong-Wei;
    • Yu Zhou;
    • Alla Lapidus;
    • James Han;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Tindall, Brian J.;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
    19

    Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 655, doi. 10.4056/sigs.4718645
    By:
    • Visser, Michael;
    • Parshina, Sofiya;
    • Alves, Joana;
    • Sousa, Diana;
    • Pereira, Inês;
    • Muyzer, Gerard;
    • Kuever, Jan;
    • Lebedinsky, Alexander;
    • Koehorst, Jasper;
    • Worm, Petra;
    • Plugge, Caroline;
    • Schaap, Peter;
    • Goodwin, Lynne;
    • Lapidus, Alla;
    • Kyrpides, Nikos;
    • Detter, Janine;
    • Woyke, Tanja;
    • Chain, Patrick;
    • Davenport, Karen;
    • Spring, Stefan
    Publication type:
    Article
    20

    Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252 isolated from marine sediment.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 687, doi. 10.4056/sigs.3828824
    By:
    • Breider, Sven;
    • Teshima, Hazuki;
    • Petersen, Jörn;
    • Chertkov, Olga;
    • Dalingault, Hajnalka;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Rohde, Manfred;
    • Tindall, Brian;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Brinkhoff, Thorsten
    Publication type:
    Article
    21
    22

    High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1020, doi. 10.4056/sigs.5449586
    By:
    • Zhou, Yu;
    • Li, Rui;
    • Gao, Xiao-Yang;
    • Lapidus, Alla;
    • Han, James;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Rohde, Manfred;
    • Mavromatis, Konstantinos;
    • Tindall, Brian;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Li, Wen-Jun
    Publication type:
    Article
    23

    Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1076, doi. 10.4056/sigs.5138968
    By:
    • Göker, Markus;
    • Lu, Megan;
    • Fiebig, Anne;
    • Nolan, Matt;
    • Lapidus, Alla;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    24

    Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134).

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 28, doi. 10.4056/sigs.4207886
    By:
    • Meier-Kolthoff, Jan;
    • Lu, Megan;
    • Huntemann, Marcel;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pitluck, Sam;
    • Goodwin, Lynne;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Pötter, Gabriele;
    • Land, Miriam;
    • Ivanova, Natalia;
    • Rohde, Manfred;
    • Göker, Markus;
    • Detter, John;
    • Woyke, Tanja;
    • Kyrpides, Nikos;
    • Klenk, Hans-Peter
    Publication type:
    Article
    25

    Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701) and emended description of the genus Thermanaerovibrio.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 57, doi. 10.4056/sigs.4237901
    By:
    • Palaniappan, Krishna;
    • Meier-Kolthoff, Jan;
    • Teshima, Hazuki;
    • Nolan, Matt;
    • Lapidus, Alla;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Rohde, Manfred
    Publication type:
    Article
    26

    Genome sequence of Frateuria aurantia type strain (Kondô 67), a xanthomonade isolated from Lilium auratium Lindl.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 83, doi. 10.4056/sigs.4338002
    By:
    • Anderson, Iain;
    • Teshima, Huzuki;
    • Nolan, Matt;
    • Lapidus, Alla;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna;
    • Land, Miriam
    Publication type:
    Article
    27

    Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336), a representative of the Roseobacter clade.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 128, doi. 10.4056/sigs.4297965
    By:
    • Buddruhs, Nora;
    • Chertkov, Olga;
    • Petersen, Jörn;
    • Fiebig, Anne;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Göker, Markus;
    • Brinkhoff, Thorsten;
    • Klenk, Hans-Peter
    Publication type:
    Article
    28

    Genome sequence of Phaeobacter daeponensis type strain (DSM 23529), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 142, doi. 10.4056/sigs.4287962
    By:
    • Dogs, Marco;
    • Teshima, Hazuki;
    • Petersen, Jörn;
    • Fiebig, Anne;
    • Chertkov, Olga;
    • Dalingault, Hajnalka;
    • Chen, Amy;
    • Pati, Amrita;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
    29

    Genome sequence of Phaeobacter caeruleus type strain (DSM 24564), a surface-associated member of the marine Roseobacter clade.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 403, doi. 10.4056/sigs.3927626
    By:
    • Beyersmann, Paul;
    • Chertkov, Olga;
    • Petersen, Jörn;
    • Fiebig, Anne;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Brinkhoff, Thorsten
    Publication type:
    Article
    30

    Complete genome sequence of Halorhodospira halophila SL1.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 206, doi. 10.4056/sigs.3677284
    By:
    • Challacombe, Jean;
    • Majid, Sophia;
    • Deole, Ratnakar;
    • Brettin, Thomas;
    • Bruce, David;
    • Delano, Susana;
    • Detter, John;
    • Gleasner, Cheryl;
    • Han, Cliff;
    • Misra, Monica;
    • Reitenga, Krista;
    • Mikhailova, Natalia;
    • Woyke, Tanja;
    • Pitluck, Sam;
    • Nolan, Matt;
    • Land, Miriam;
    • Saunders, Elizabeth;
    • Tapia, Roxanne;
    • Lapidus, Alla;
    • Ivanova, Natalia
    Publication type:
    Article
    31

    Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H), and emendation of the species Turneriella parva.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 228, doi. 10.4056/sigs.3617113
    By:
    • Stackebrandt, Erko;
    • Chertkov, Olga;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    32

    Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692) from the alkaline Lake Magadi in the East African Rift.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 165, doi. 10.4056/sigs.3607108
    By:
    • Liolos, Konstantinos;
    • Abt, Birte;
    • Scheuner, Carmen;
    • Teshima, Hazuki;
    • Held, Brittany;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy
    Publication type:
    Article
    33

    Complete genome sequence of Coriobacterium glomerans type strain (PW2) from the midgut of Pyrrhocoris apterus L. (red soldier bug).

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 15, doi. 10.4056/sigs.3507020
    By:
    • Stackebrandt, Erko;
    • Zeytun, Ahmet;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    34

    Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 88, doi. 10.4056/sigs.3096473
    By:
    • Abt, Birte;
    • Göker, Markus;
    • Scheuner, Carmen;
    • Han, Cliff;
    • Lu, Megan;
    • Misra, Monica;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Mikhailova, Natalia
    Publication type:
    Article
    35

    High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5).

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 37, doi. 10.4056/sigs.3537045
    By:
    • Stackebrandt, Erko;
    • Chertkov, Olga;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Han, Cliff;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Bruce, David;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    36

    Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA).

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 47, doi. 10.4056/sigs.3547050
    By:
    • Mavromatis, Konstantinos;
    • Stackebrandt, Erko;
    • Held, Brittany;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    37

    Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437).

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 26, doi. 10.4056/sigs.3527032
    By:
    • Mavromatis, Konstantinos;
    • Stackebrandt, Erko;
    • Munk, Christine;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    38

    Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 304, doi. 10.4056/sigs.3226659
    By:
    • Spring, Stefan;
    • Visser, Michael;
    • Lu, Megan;
    • Copeland, Alex;
    • Lapidus, Alla;
    • Lucas, Susan;
    • Jan-Fang Cheng;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne A.;
    • Pitluck, Sam;
    • Ivanova, Natalia;
    • Land, Miriam;
    • Hauser, Loren;
    • Larimer, Frank;
    • Rohde, Manfred;
    • Göker, Markus;
    • Detter, John C.;
    • Kyrpides, Nikos C.;
    • Woyke, Tanja
    Publication type:
    Article
    39

    Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 210, doi. 10.4056/sigs.3117229
    By:
    • Anderson, Iain;
    • Munk, Christine;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Tice, Hope;
    • Del Rio, Tijana Glavina;
    • Jan-Fang Cheng;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna;
    • Land, Miriam
    Publication type:
    Article
    40

    Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 107, doi. 10.4056/sigs.3216895
    By:
    • Riedel, Thomas;
    • Held, Brittany;
    • Nolan, Matt;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Tice, Hope;
    • Del Rio, Tijana Glavina;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne A.;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    41

    Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 91, doi. 10.4056/sigs.2996379
    By:
    • Plugge, Caroline M.;
    • Henstra, Anne M.;
    • Worm, Petra;
    • Swarts, Daan C.;
    • Paulitsch-Fuchs, Astrid H.;
    • Scholten, Johannes C.M.;
    • Lykidis, Athanasios;
    • Lapidus, Alla L.;
    • Goltsman, Eugene;
    • Kim, Edwin;
    • McDonald, Erin;
    • Rohlin, Lars;
    • Crable, Bryan R.;
    • Gunsalus, Robert P.;
    • Stams, Alfons J.M.;
    • McInerney, Michael J.
    Publication type:
    Article
    42

    Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 120, doi. 10.4056/sigs.3296896
    By:
    • Riedel, Thomas;
    • Held, Brittany;
    • Nolan, Matt;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Tice, Hope;
    • Del Rio, Tijana Glavina;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne A.;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    43

    Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093<sup>T</sup>).

    Published in:
    2012
    By:
    • Kappler, Ulrike;
    • Davenport, Karen;
    • Beatson, Scott;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Berry, Kerrie W.;
    • Del Rio, Tijana Glavina;
    • Hammon, Nancy;
    • Dalin, Eileen;
    • Tice, Hope;
    • Pitluck, Sam;
    • Richardson, Paul;
    • Bruce, David;
    • Goodwin, Lynne A.;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Detter, John C.;
    • Chang, Yun-juan;
    • Jeffries, Cynthia D.
    Publication type:
    Art Reproduction
    44

    Complete genome sequence of the plant-associated Serratia plymuthica strain AS13.

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 22, doi. 10.4056/sigs.2966299
    By:
    • Neupane, Saraswoti;
    • Finlay, Roger D.;
    • Kyrpides, Nikos C.;
    • Goodwin, Lynne;
    • Alström, Sadhna;
    • Lucas, Susan;
    • Land, Miriam;
    • Han, James;
    • Lapidus, Alla;
    • Jan-Fang Cheng;
    • Bruce, David;
    • Pitluck, Sam;
    • Peters, Lin;
    • Ovchinnikova, Galina;
    • Held, Brittany;
    • Cliff Han;
    • Detter, John C.;
    • Tapia, Roxanne;
    • Hauser, Loren;
    • Ivanova, Natalia
    Publication type:
    Article
    45
    46
    47
    48
    49
    50

    Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology.

    Published in:
    BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-308
    By:
    • Chernyaeva, Ekaterina N.;
    • Shulgina, Marina V.;
    • Rotkevich, Mikhail S.;
    • Dobrynin, Pavel V.;
    • Simonov, Serguei A.;
    • Shitikov, Egor A.;
    • Ischenko, Dmitry S.;
    • Karpova, Irina Y.;
    • Kostryukova, Elena S.;
    • Ilina, Elena N.;
    • Govorun, Vadim M.;
    • Zhuravlev, Vyacheslav Y.;
    • Manicheva, Olga A.;
    • Yablonsky, Peter K.;
    • Isaeva, Yulia D.;
    • Nosova, Elena Y.;
    • Mokrousov, Igor V.;
    • Vyazovaya, Anna A.;
    • Narvskaya, Olga V.;
    • Lapidus, Alla L.
    Publication type:
    Article