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Analysis of rhizosphere fungal community of agricultural crops cultivated in laboratory experiments on Chernevaya taiga soil.
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- World Journal of Microbiology & Biotechnology, 2024, v. 40, n. 1, p. 1, doi. 10.1007/s11274-023-03827-6
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- Article
Accurate isoform discovery with IsoQuant using long reads.
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- Nature Biotechnology, 2023, v. 41, n. 7, p. 915, doi. 10.1038/s41587-022-01565-y
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- Article
Micromorphological Characteristics of Soils in the Chernevaya Taiga (Western Siberia, Russia).
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- Geosciences (2076-3263), 2023, v. 13, n. 6, p. 186, doi. 10.3390/geosciences13060186
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- Article
Chromosome-Length Assembly of the Baikal Seal (Pusa sibirica) Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal.
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- Genes, 2023, v. 14, n. 3, p. 619, doi. 10.3390/genes14030619
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- Article
Agricultural Crops Grown in Laboratory Conditions on Chernevaya Taiga Soil Demonstrate Unique Composition of the Rhizosphere Microbiota.
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- Micromachines, 2022, v. 13, n. 11, p. 2171, doi. 10.3390/microorganisms10112171
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- Article
Agricultural Crops Grown in Laboratory Conditions on Chernevaya Taiga Soil Demonstrate Unique Composition of the Rhizosphere Microbiota.
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- Microorganisms, 2022, v. 10, n. 11, p. 2171, doi. 10.3390/microorganisms10112171
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- Article
MetaGT: A pipeline for de novo assembly of metatranscriptomes with the aid of metagenomic data.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.981458
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- Article
Distribution of Molecular Weight of Humic Substances Isolated from Soils of Tallgrass Temperate Rainforests (Chernevaya Taiga).
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- Agronomy, 2022, v. 12, n. 8, p. N.PAG, doi. 10.3390/agronomy12081760
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- Article
Fungal Metagenome of Chernevaya Taiga Soils: Taxonomic Composition, Differential Abundance and Factors Related to Plant Gigantism.
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- Journal of Fungi, 2021, v. 7, n. 11, p. 1, doi. 10.3390/jof7110908
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- Article
Elemental and Molecular Composition of Humic Acids Isolated from Soils of Tallgrass Temperate Rainforests (Chernevaya taiga) by 1 H- 13 C HECTCOR NMR Spectroscopy.
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- Agronomy, 2021, v. 11, n. 10, p. 1998, doi. 10.3390/agronomy11101998
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- Article
Metagenomic Data Assembly – The Way of Decoding Unknown Microorganisms.
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- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.613791
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- Article
Genomic Variations in Drug Resistant Mycobacterium tuberculosis Strains Collected from Patients with Different Localization of Infection.
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- Antibiotics (2079-6382), 2021, v. 10, n. 1, p. 27, doi. 10.3390/antibiotics10010027
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- Article
Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.
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- 2020
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- Correction Notice
MetaviralSPAdes: assembly of viruses from metagenomic data.
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- Bioinformatics, 2020, v. 36, n. 14, p. 4126, doi. 10.1093/bioinformatics/btaa490
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- Article
CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.
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- BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-03591-6
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- Article
Extending rnaSPAdes functionality for hybrid transcriptome assembly.
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- BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-03614-2
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- Article
A New Thioalkalivibrio sp. Strain Isolated from Petroleum-Contaminated Brackish Estuary Sediments: A New Candidate for Bio-Based Application for Sulfide Oxidation in Halo-Alkaline Conditions.
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- Water (20734441), 2020, v. 12, n. 5, p. 1385, doi. 10.3390/w12051385
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- Article
MGnify: the microbiome analysis resource in 2020.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D570, doi. 10.1093/nar/gkz1035
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- Article
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data.
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- GigaScience, 2019, v. 8, n. 9, p. N.PAG, doi. 10.1093/gigascience/giz100
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- Article
Autoprobiotics as an Approach for Restoration of Personalised Microbiota.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01869
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- Article
Draft genome sequence of Marinobacterium rhizophilum CL-YJ9<sup>T</sup> (DSM 18822<sup>T</sup>), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica.
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0275-x
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- Article
Draft genome sequence of Dethiobacter alkaliphilus strain AHT1<sup>T</sup>, a gram-positive sulfidogenic polyextremophile.
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0268-9
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- Article
Complete genome sequence of Jiangella gansuensis strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus Jiangella and source of new antibiotic compounds.
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- Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6
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- Article
plasmidSPAdes: assembling plasmids from whole genome sequencing data.
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- Bioinformatics, 2016, v. 32, n. 22, p. 3380, doi. 10.1093/bioinformatics/btw493
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- Article
Draft genome of Prochlorothrix hollandica CCAP 1490/1<sup>T</sup> (CALU1027), the chlorophyll a/b-containing filamentous cyanobacterium.
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- Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0204-4
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- Article
Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.
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- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0194-2
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- Article
Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2<sup>T</sup>, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes.
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- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0184-4
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- Article
rnaQUAST: a quality assessment tool for de novo transcriptome assemblies.
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- Bioinformatics, 2016, v. 32, n. 14, p. 2210, doi. 10.1093/bioinformatics/btw218
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- Article
High-quality draft genome sequence of Flavobacterium suncheonense GH29-5<sup>T</sup> (DSM 17707<sup>T</sup>) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5<sup>T</sup>.
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- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
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- Article
Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles.
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- PLoS Genetics, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pgen.1006108
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- Article
Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477<sup>T</sup>).
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- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x
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- Article
Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050<sup>T</sup> (DSM 19838<sup>T</sup>) and Gramella portivictoriae UST040801-001<sup>T</sup> (DSM 23547<sup>T</sup>), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005
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- Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9
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- Article
Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00238
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- Article
High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775, a plant pathogen of French bean pods.
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- Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0127-5
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- Article
Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland.
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- Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0128-4
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- Article
Complete genome sequence of Methanospirillum hungatei type strain JF1.
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- Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0124-8
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- Article
Sequencing, biochemical characterization, crystal structure and molecular dynamics of cellobiohydrolase Cel7A from Geotrichum candidum 3C.
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- FEBS Journal, 2015, v. 282, n. 23, p. 4515, doi. 10.1111/febs.13509
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- Article
High-quality draft genome sequence of Gracilimonas tropica CL-CB462 (DSM 19535), isolated from a Synechococcus culture.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0088-8
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- Article
IgSimulator: a versatile immunosequencing simulator.
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- Bioinformatics, 2015, v. 31, n. 19, p. 3213, doi. 10.1093/bioinformatics/btv326
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- Article
High quality draft genome sequence of Meganema perideroedes str. Gr1<sup>T</sup> and a proposal for its reclassification to the family Meganemaceae fam. nov.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0013-1
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- Article
Consortium of the 'bichlorophyllous' cyanobacterium P rochlorothrix hollandica and chemoheterotrophic partner bacteria: culture and metagenome-based description.
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- Environmental Microbiology Reports, 2015, v. 7, n. 4, p. 623, doi. 10.1111/1758-2229.12298
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- Article
High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7<sup>T</sup>, and emended description of the genus Halotalea.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7
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- Article
Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0041-x
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- Article
High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395<sup>T</sup> (DSM 45146<sup>T</sup>).
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0036-7
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- Article
IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis.
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- Bioinformatics, 2015, v. 31, n. 12, p. i53, doi. 10.1093/bioinformatics/btv238
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- Article
Draft genome sequence of Halomonas lutea strain YIM 91125<sup>T</sup> (DSM 23508<sup>T</sup>) isolated from the alkaline Lake Ebinur in Northwest China.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1
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- Article
High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884<sup>T</sup>) isolated from a Chironomus sp. egg mass.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4
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- Article
High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1<sup>T</sup> (DSM 17521<sup>T</sup>) isolated from muddy waters of a drainage system in Chandigarh, India.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8
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- Article
Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 655, doi. 10.4056/sigs.4718645
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- Article
Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252 isolated from marine sediment.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 687, doi. 10.4056/sigs.3828824
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- Article