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Genomic and metagenomic technologies to explore the antibiotic resistance mobilome.
Published in:
Annals of the New York Academy of Sciences, 2017, v. 1388, n. 1, p. 26, doi. 10.1111/nyas.13282
By:
- Martínez, José L.;
- Coque, Teresa M.;
- Lanza, Val F.;
- la Cruz, Fernando;
- Baquero, Fernando
Publication type:
Article
Strain-specific predation of Bdellovibrio bacteriovorus on Pseudomonas aeruginosa with a higher range for cystic fibrosis than for bacteremia isolates.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-14378-5
By:
- Saralegui, Claudia;
- Herencias, Cristina;
- Halperin, Ana Verónica;
- de Dios-Caballero, Juan;
- Pérez-Viso, Blanca;
- Salgado, Sergio;
- Lanza, Val F.;
- Cantón, Rafael;
- Baquero, Fernando;
- Prieto, M. Auxiliadora;
- del Campo, Rosa
Publication type:
Article
Co-diversification of Enterococcus faecium Core Genomes and PBP5: Evidences of pbp5 Horizontal Transfer.
Published in:
Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01581
By:
- Novais, Carla;
- Tedim, Ana P.;
- Lanza, Val F.;
- Freitas, Ana R.;
- Silveira, Eduarda;
- Escada, Ricardo;
- Roberts, Adam P.;
- Al-Haroni, Mohammed;
- Baquero, Fernando;
- Peixe, Luísa;
- Coque, Teresa M.
Publication type:
Article
Mge-cluster: a reference-free approach for typing bacterial plasmids.
Published in:
NAR Genomics & Bioinformatics, 2023, v. 5, n. 3, p. 1, doi. 10.1093/nargab/lqad066
By:
- Arredondo-Alonso, Sergio;
- Gladstone, Rebecca A;
- Pöntinen, Anna K;
- Gama, João A;
- Schürch, Anita C;
- Lanza, Val F;
- Johnsen, Pål Jarle;
- Samuelsen, Ørjan;
- Tonkin-Hill, Gerry;
- Corander, Jukka
Publication type:
Article
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21749-5
By:
- Pöntinen, Anna K.;
- Top, Janetta;
- Arredondo-Alonso, Sergio;
- Tonkin-Hill, Gerry;
- Freitas, Ana R.;
- Novais, Carla;
- Gladstone, Rebecca A.;
- Pesonen, Maiju;
- Meneses, Rodrigo;
- Pesonen, Henri;
- Lees, John A.;
- Jamrozy, Dorota;
- Bentley, Stephen D.;
- Lanza, Val F.;
- Torres, Carmen;
- Peixe, Luisa;
- Coque, Teresa M.;
- Parkhill, Julian;
- Schürch, Anita C.;
- Willems, Rob J. L.
Publication type:
Article
Nutrient starvation leading to triglyceride accumulation activates the Entner Doudoroff pathway in Rhodococcus jostii RHA1.
Published in:
Microbial Cell Factories, 2017, v. 16, p. 1, doi. 10.1186/s12934-017-0651-7
By:
- Juarez, Antonio;
- Villa, Juan A.;
- Lanza, Val F.;
- Lázaro, Beatriz;
- de la Cruz, Fernando;
- Alvarez, Héctor M.;
- Moncalián, Gabriel
Publication type:
Article
PATO: Pangenome Analysis Toolkit.
Published in:
Bioinformatics, 2021, v. 37, n. 23, p. 4564, doi. 10.1093/bioinformatics/btab697
By:
- Fernández-de-Bobadilla, Miguel D;
- Talavera-Rodríguez, Alba;
- Chacón, Lucía;
- Baquero, Fernando;
- Coque, Teresa M;
- Lanza, Val F
Publication type:
Article
Ecogenetics of antibiotic resistance in Listeria monocytogenes.
Published in:
Molecular Microbiology, 2020, v. 113, n. 3, p. 570, doi. 10.1111/mmi.14454
By:
- Baquero, Fernando;
- F. Lanza, Val;
- Duval, Mélodie;
- Coque, Teresa M.
Publication type:
Article
Drinking Water Chlorination Impact on Fecal Carriage of Extended-Spectrum Beta-Lactamase-Producing Enterobacteriaceae in Bangladeshi Children in a Double-Blind, Cluster-Randomized Controlled Trial.
Published in:
Environmental Health Perspectives, 2022, v. 130, n. 11, p. 117702-1, doi. 10.1289/EHP11359
By:
- Montealegre, Maria Camila;
- Greenwood, Esther E.;
- Teichmann, Lisa;
- Nadimpalli, Maya L.;
- Caduff, Lea;
- Swarthout, Jenna M.;
- Nydegger, Tabea;
- Sultana, Sonia;
- Islam, Mohammad Aminul;
- Lanza, Val F.;
- Luby, Stephen P.;
- Pickering, Amy J.;
- Julian, Timothy R.
Publication type:
Article
Phylogenomics of Enterococcus faecalis from wild birds: new insights into host‐associated differences in core and accessory genomes of the species.
Published in:
Environmental Microbiology, 2019, v. 21, n. 8, p. 3046, doi. 10.1111/1462-2920.14702
By:
- León‐Sampedro, Ricardo;
- del Campo, Rosa;
- Rodriguez‐Baños, Mercedes;
- Lanza, Val F.;
- Pozuelo, María José;
- Francés‐Cuesta, Carlos;
- Tedim, Ana P.;
- Freitas, Ana R.;
- Novais, Carla;
- Peixe, Luísa;
- Willems, Rob J. L.;
- Corander, Jukka;
- González Candelas, Fernando;
- Baquero, Fernando;
- Coque, Teresa M.
Publication type:
Article
Characterisation of the urinary steroid profile of patients with nonfunctioning adrenal incidentalomas: A matched controlled cross‐sectional study.
Published in:
Clinical Endocrinology, 2023, v. 98, n. 2, p. 165, doi. 10.1111/cen.14811
By:
- Araujo‐Castro, Marta;
- Casals, Gregori;
- Hanzu, Felicia A.;
- Pascual‐Corrales, Eider;
- García Cano, Ana M.;
- Lanza, Val F.;
- Luis del Rey Mejías, Ángel;
- Marchan, Marta;
- Escobar‐Morreale, Héctor F.;
- Valderrabano, Pablo
Publication type:
Article
Serum microRNAs are key predictors of long‐term heart failure and cardiovascular death after myocardial infarction.
Published in:
ESC Heart Failure, 2022, v. 9, n. 5, p. 3367, doi. 10.1002/ehf2.13919
By:
- Rincón, Luis M.;
- Rodríguez‐Serrano, Macarena;
- Conde, Elisa;
- Lanza, Val F.;
- Sanmartín, Marcelo;
- González‐Portilla, Paz;
- Paz‐García, Marta;
- Del Rey, José Manuel;
- Menacho, Miriam;
- García Bermejo, María‐Laura;
- Zamorano, José L.
Publication type:
Article
In-depth resistome analysis by targeted metagenomics.
Published in:
Microbiome, 2018, v. 6, p. 1, doi. 10.1186/s40168-017-0387-y
By:
- Lanza, Val F.;
- Baquero, Fernando;
- Luís Martínez, José;
- Ramos-Ruíz, Ricardo;
- González-Zorn, Bruno;
- Andremont, Antoine;
- Sánchez-Valenzuela, Antonio;
- Ehrlich, Stanislav Dusko;
- Kennedy, Sean;
- Ruppé, Etienne;
- van Schaik, Willem;
- Willems, Rob J.;
- de la Cruz, Fernando;
- Coque, Teresa M.
Publication type:
Article
Public health evolutionary biology of antimicrobial resistance: priorities for intervention.
Published in:
Evolutionary Applications, 2015, v. 8, n. 3, p. 223, doi. 10.1111/eva.12235
By:
- Baquero, Fernando;
- Lanza, Val F.;
- Cantón, Rafael;
- Coque, Teresa M.
Publication type:
Article
Plasmid Flux in Escherichia coli ST131 Sublineages, Analyzed by Plasmid Constellation Network (PLACNET), a New Method for Plasmid Reconstruction from Whole Genome Sequences.
Published in:
PLoS Genetics, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pgen.1004766
By:
- Lanza, Val F.;
- de Toro, María;
- Garcillán-Barcia, M. Pilar;
- Mora, Azucena;
- Blanco, Jorge;
- Coque, Teresa M.;
- de la Cruz, Fernando
Publication type:
Article
Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages.
Published in:
PLoS Genetics, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pgen.1004776
By:
- de Been, Mark;
- Lanza, Val F.;
- de Toro, María;
- Scharringa, Jelle;
- Dohmen, Wietske;
- Du, Yu;
- Hu, Juan;
- Lei, Ying;
- Li, Ning;
- Tooming-Klunderud, Ave;
- Heederik, Dick J. J.;
- Fluit, Ad C.;
- Bonten, Marc J. M.;
- Willems, Rob J. L.;
- de la Cruz, Fernando;
- van Schaik, Willem
Publication type:
Article
Chagas disease is related to structural changes of the gut microbiota in adults with chronic infection (TRIPOBIOME Study).
Published in:
PLoS Neglected Tropical Diseases, 2023, v. 17, n. 7, p. 1, doi. 10.1371/journal.pntd.0011490
By:
- Pérez-Molina, José A.;
- Crespillo-Andújar, Clara;
- Trigo, Elena;
- Chamorro, Sandra;
- Arsuaga, Marta;
- Olavarrieta, Leticia;
- Navia, Beatriz;
- Martín, Oihane;
- Monge-Maillo, Begoña;
- Norman, Francesca F.;
- Lanza, Val F.;
- Serrano-Villar, Sergio
Publication type:
Article
Fitness cost of vancomycin-resistant Enterococcus faecium plasmids associated with hospital infection outbreaks.
Published in:
2021
By:
- Tedim, Ana P;
- Lanza, Val F;
- Rodríguez, Concepción M;
- Freitas, Ana R;
- Novais, Carla;
- Peixe, Luísa;
- Baquero, Fernando;
- Coque, Teresa M
Publication type:
journal article
Long-term clonal dynamics of Enterococcus faecium strains causing bloodstream infections (1995-2015) in Spain.
Published in:
2017
By:
- Tedim, Ana P.;
- Ruíz-Garbajosa, Patricia;
- Rodríguez, Maria Concepción;
- Rodríguez-Baños, Mercedes;
- Lanza, Val F.;
- Derdoy, Laura;
- Zurita, Gonzalo Cárdenas;
- Loza, Elena;
- Cantón, Rafael;
- Baquero, Fernando;
- Coque, Teresa M.;
- Cárdenas Zurita, Gonzalo
Publication type:
journal article
PLACNETw: a web-based tool for plasmid reconstruction from bacterial genomes.
Published in:
Bioinformatics, 2017, v. 33, n. 23, p. 3796, doi. 10.1093/bioinformatics/btx462
By:
- Vielva, Luis;
- Toro, María de;
- Lanza, Val F.;
- de la Cruz, Fernando
Publication type:
Article
AcCNET (Accessory Genome Constellation Network): comparative genomics software for accessory genome analysis using bipartite networks.
Published in:
Bioinformatics, 2017, v. 33, n. 2, p. 283, doi. 10.1093/bioinformatics/btw601
By:
- Lanza, Val F.;
- Baquero, Fernando;
- de la Cruz, Fernando;
- Coque, Teresa M.
Publication type:
Article
Genomics of Serratia marcescens Isolates Causing Outbreaks in the Same Pediatric Unit 47 Years Apart: Position in an Updated Phylogeny of the Species.
Published in:
Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00451
By:
- Saralegui, Claudia;
- Ponce-Alonso, Manuel;
- Pérez-Viso, Blanca;
- Moles Alegre, Laura;
- Escribano, Esperanza;
- Lázaro-Perona, Fernando;
- Lanza, Val F.;
- de Pipaón, Miguel Sáenz;
- Rodríguez, Juan Miguel;
- Baquero, Fernando;
- del Campo, Rosa
Publication type:
Article
Gene Transmission in the One Health Microbiosphere and the Channels of Antimicrobial Resistance.
Published in:
Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02892
By:
- Baquero, Fernando;
- Coque, Teresa M.;
- Martínez, José-Luis;
- Aracil-Gisbert, Sonia;
- Lanza, Val F.
Publication type:
Article
Microcins in Enterobacteriaceae : Peptide Antimicrobials in the Eco-Active Intestinal Chemosphere.
Published in:
Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.02261
By:
- Baquero, Fernando;
- Lanza, Val F.;
- Baquero, Maria-Rosario;
- del Campo, Rosa;
- Bravo-Vázquez, Daniel A.
Publication type:
Article
Global distribution of IRC7 alleles in Saccharomyces cerevisiae populations: a genomic and phenotypic survey within the wine clade.
Published in:
Environmental Microbiology, 2021, v. 23, n. 6, p. 3182, doi. 10.1111/1462-2920.15540
By:
- Ruiz, Javier;
- Celis, Miguel;
- Martín‐Santamaría, María;
- Benito‐Vázquez, Iván;
- Pontes, Ana;
- Lanza, Val F.;
- Sampaio, José Paulo;
- Santos, Antonio;
- Belda, Ignacio
Publication type:
Article
Fecal microbiota transplantation in HIV: A pilot placebo-controlled study.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21472-1
By:
- Serrano-Villar, Sergio;
- Talavera-Rodríguez, Alba;
- Gosalbes, María José;
- Madrid, Nadia;
- Pérez-Molina, José A.;
- Elliott, Ryan J.;
- Navia, Beatriz;
- Lanza, Val F.;
- Vallejo, Alejandro;
- Osman, Majdi;
- Dronda, Fernando;
- Budree, Shrish;
- Zamora, Javier;
- Gutiérrez, Carolina;
- Manzano, Mónica;
- Vivancos, María Jesús;
- Ron, Raquel;
- Martínez-Sanz, Javier;
- Herrera, Sabina;
- Ansa, Uxua
Publication type:
Article
Relationship of Diet to Gut Microbiota and Inflammatory Biomarkers in People with HIV.
Published in:
Nutrients, 2022, v. 14, n. 6, p. 1221, doi. 10.3390/nu14061221
By:
- Manzano, Mónica;
- Talavera-Rodríguez, Alba;
- Moreno, Elena;
- Madrid, Nadia;
- Gosalbes, María José;
- Ron, Raquel;
- Dronda, Fernando;
- Pérez-Molina, José A.;
- Lanza, Val F.;
- Díaz, Jorge;
- Moreno, Santiago;
- Navia, Beatriz;
- Serrano-Villar, Sergio
Publication type:
Article

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