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Bacterial chromatin proteins, transcription, and DNA topology: Inseparable partners in the control of gene expression.
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- Molecular Microbiology, 2024, v. 122, n. 1, p. 81, doi. 10.1111/mmi.15283
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- Article
RNA polymerase SI3 domain modulates global transcriptional pausing and pause-site fluctuations.
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- Nucleic Acids Research, 2024, v. 52, n. 8, p. 4556, doi. 10.1093/nar/gkae209
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- Article
Evolutionary flexibility and rigidity in the bacterial methylerythritol phosphate (MEP) pathway.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1286626
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- Article
CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations.
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- G3: Genes | Genomes | Genetics, 2020, v. 10, n. 11, p. 4287, doi. 10.1534/g3.120.401498
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- Article
Heterologous expression of a glycosyl hydrolase and cellular reprogramming enable Zymomonas mobilis growth on cellobiose.
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- PLoS ONE, 2020, v. 15, n. 8, p. 1, doi. 10.1371/journal.pone.0226235
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- Article
Alternative transcription cycle for bacterial RNA polymerase.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-14208-9
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- Article
Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis.
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- Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02596
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- Article
A Markerless Method for Genome Engineering in Zymomonas mobilis ZM4.
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- Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.02216
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- Article
Systems Metabolic Engineering of Escherichia coli Improves Coconversion of Lignocellulose‐Derived Sugars.
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- Biotechnology Journal, 2019, v. 14, n. 9, p. N.PAG, doi. 10.1002/biot.201800441
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- Article
The elemental mechanism of transcriptional pausing.
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- eLife, 2019, p. 1, doi. 10.7554/eLife.40981
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- Article
Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast.
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- Genetics, 2018, v. 210, n. 1, p. 219, doi. 10.1534/genetics.118.301161
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- Article
StpA and Hha stimulate pausing by RNA polymerase by promoting DNA-DNA bridging of H-NS filaments.
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- Nucleic Acids Research, 2018, v. 46, n. 11, p. 5525, doi. 10.1093/nar/gky265
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- Article
Complete genome sequence and the expression pattern of plasmids of the model ethanologen <italic>Zymomonas mobilis</italic> ZM4 and its xylose-utilizing derivatives 8b and 2032.
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- Biotechnology for Biofuels, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13068-018-1116-x
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- Article
Life times of metastable states guide regulatory signaling in transcriptional riboswitches.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03375-w
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- Article
Fidaxomicin jams Mycobacterium tuberculosis RNA polymerase motions needed for initiation via RbpA contacts.
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- eLife, 2018, p. 1, doi. 10.7554/eLife.34823
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- Article
Chemical genomic guided engineering of gamma‑valerolactone tolerant yeast.
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- Microbial Cell Factories, 2018, v. 17, p. 1, doi. 10.1186/s12934-017-0848-9
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- Article
The Battle of RNA Synthesis: Virus versus Host.
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- Viruses (1999-4915), 2017, v. 9, n. 10, p. 309, doi. 10.3390/v9100309
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- Article
Data exploration, quality control and statistical analysis of ChIP-exo/nexus experiments.
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- Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx594
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- Article
Pausing guides RNA folding to populate transiently stable RNA structures for riboswitch-based transcription regulation.
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- eLife, 2017, p. 1, doi. 10.7554/eLife.21297
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- Article
Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research.
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- G3: Genes | Genomes | Genetics, 2016, v. 6, n. 6, p. 1757, doi. 10.1534/g3.116.029389
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- Article
Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain.
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- Microbial Cell Factories, 2016, v. 15, p. 1, doi. 10.1186/s12934-016-0417-7
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- Article
P1 Ref Endonuclease: A Molecular Mechanism for Phage-Enhanced Antibiotic Lethality.
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- PLoS Genetics, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pgen.1005797
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- Article
Structure of a bacterial RNA polymerase holoenzyme open promoter complex.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.08504
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- Article
Bridged filaments of histone-like nucleoid structuring protein pause RNA polymerase and aid termination in bacteria.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.04970.001
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- Article
Trigger-helix folding pathway and SI3 mediate catalysis and hairpin-stabilized pausing by Escherichia coli RNA polymerase.
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- Nucleic Acids Research, 2014, v. 42, n. 20, p. 12707, doi. 10.1093/nar/gku997
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- Article
RNA polymerase pausing and nascent-RNA structure formation are linked through clamp-domain movement.
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- Nature Structural & Molecular Biology, 2014, v. 21, n. 9, p. 794, doi. 10.1038/nsmb.2867
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- Article
Systems‐level analysis of xylose fermentation by experimentally‐evolved Saccharomyces cerevisiae (981.4).
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- FASEB Journal, 2014, v. 28, p. N.PAG, doi. 10.1096/fasebj.28.1_supplement.981.4
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- Article
dPeak: High Resolution Identification of Transcription Factor Binding Sites from PET and SET ChIP-Seq Data.
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- PLoS Computational Biology, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003246
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- Article
The Bacterial Response Regulator ArcA Uses a Diverse Binding Site Architecture to Regulate Carbon Oxidation Globally.
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- PLoS Genetics, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pgen.1003839
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- Article
The non-pathogenic Escherichia coli strain W secretes SslE via the virulence-associated type II secretion system beta.
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- BMC Microbiology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2180-13-130
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- Article
Building a better stop sign: understanding the signals that terminate transcription.
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- Nature Methods, 2013, v. 10, n. 7, p. 618, doi. 10.1038/nmeth.2527
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- Article
Genome-scale Analysis of <i>Escherichia coli</i> FNR Reveals Complex Features of Transcription Factor Binding.
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- PLoS Genetics, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pgen.1003565
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- Article
Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid Approach.
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- PLoS Biology, 2010, v. 8, n. 9, p. 1, doi. 10.1371/journal.pbio.1000483
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- Article
The bridge helix coordinates movements of modules in RNA polymerase.
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- BMC Biology, 2010, v. 8, p. 141, doi. 10.1186/1741-7007-8-141
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- Article
Role of the RNA polymerase trigger loop in catalysis and pausing.
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- Nature Structural & Molecular Biology, 2010, v. 17, n. 1, p. 99, doi. 10.1038/nsmb.1732
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- Article
Functional specialization of transcription elongation factors.
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- EMBO Journal, 2009, v. 28, n. 2, p. 112, doi. 10.1038/emboj.2008.268
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- Article
Structural basis for substrate loading in bacterial RNA polymerase.
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- Nature, 2007, v. 448, n. 7150, p. 163, doi. 10.1038/nature05931
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Direct observation of base-pair stepping by RNA polymerase.
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- Nature, 2005, v. 438, n. 7067, p. 460, doi. 10.1038/nature04268
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- Article
Backtracking by single RNA polymerase molecules observed at near-base-pair resolution.
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- Nature, 2003, v. 426, n. 6967, p. 684, doi. 10.1038/nature02191
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- Article
Transcriptional pause, arrest and termination sites for RNA polymerase II in mammalian N- and c-myc genes.
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- Nucleic Acids Research, 1999, v. 27, n. 15, p. 3173, doi. 10.1093/nar/27.15.3173
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- Article
A New Valved and Air-Vented Surge Plunger for Developing Small-Diameter Monitor Wells.
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- Ground Water Monitoring & Remediation, 1986, v. 6, n. 2, p. 77, doi. 10.1111/j.1745-6592.1986.tb01243.x
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- Article
The leucine binding proteins of Escherichia coli as models for studying the relationships between protein structure and function.
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- Journal of Cellular Biochemistry, 1985, v. 29, n. 3, p. 209, doi. 10.1002/jcb.240290305
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Secretion and degradation of mutant leucine-specific binding protein molecules containing C-terminal deletions.
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- Journal of Cellular Biochemistry, 1984, v. 24, n. 4, p. 331, doi. 10.1002/jcb.240240404
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Role of membrane potential in protein folding and domain formation during secretion in escherichia coli.
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- Journal of Cellular Biochemistry, 1984, v. 24, n. 4, p. 345, doi. 10.1002/jcb.240240405
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- Article