Works by Land, Miriam

Results: 58

Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0194-2

By:

Anderson, Iain J.;
DasSarma, Priya;
Lucas, Susan;
Copeland, Alex;
Lapidus, Alla;
Del Rio, Tijana Glavina;
Tice, Hope;
Dalin, Eileen;
Bruce, David C.;
Goodwin, Lynne;
Pitluck, Sam;
Sims, David;
Brettin, Thomas S.;
Detter, John C.;
Han, Cliff S.;
Larimer, Frank;
Hauser, Loren;
Land, Miriam;
Ivanova, Natalia;
Richardson, Paul

Publication type:

Article

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T).

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x

By:

Kappler, Ulrike;
Davenport, Karen;
Beatson, Scott;
Lapidus, Alla;
Pan, Chongle;
Han, Cliff;
del Carmen Montero-Calasanz, Maria;
Land, Miriam;
Hauser, Loren;
Rohde, Manfred;
Göker, Markus;
Ivanova, Natalia;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

Complete genome sequences of Geobacillus sp. WCH70, a thermophilic strain isolated from wood compost.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0153-y

By:

Brumm, Phillip J.;
Land, Miriam L.;
Mead, David A.

Publication type:

Article

Erratum to: Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0133-2

By:

Brumm, Phillip;
Land, Miriam;
Hauser, Loren;
Jeffries, Cynthia;
Chang, Yun-Juan;
Mead, David

Publication type:

Article

Complete genome sequence of Methanospirillum hungatei type strain JF1.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0124-8

By:

Gunsalus, Robert;
Cook, Lauren;
Crable, Bryan;
Rohlin, Lars;
McDonald, Erin;
Mouttaki, Housna;
Sieber, Jessica;
Poweleit, Nicole;
Zhou, Hong;
Lapidus, Alla;
Daligault, Hajnalka;
Land, Miriam;
Gilna, Paul;
Ivanova, Natalia;
Kyrpides, Nikos;
Culley, David;
McInerney, Michael

Publication type:

Article

Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0075-0

By:

Brumm, Phillip;
Land, Miriam;
Mead, David

Publication type:

Article

Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0075-0

By:

Brumm, Phillip;
Land, Miriam;
Hauser, Loren;
Jeffries, Cynthia;
Chang, Yun-Juan;
Mead, David

Publication type:

Article

Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0041-x

By:

Shetty, Ameesha R.;
de Gannes, Vidya;
Obi, Chioma C.;
Lucas, Susan;
Lapidus, Alla;
Jan-Fang Cheng;
Goodwin, Lynne A.;
Pitluck, Samuel;
Peters, Linda;
Mikhailova, Natalia;
Teshima, Hazuki;
Han, Cliff;
Tapia, Roxanne;
Land, Miriam;
Hauser, Loren J.;
Kyrpides, Nikos;
Ivanova, Natalia;
Pagani, Ioanna;
Chain, Patrick S. G.;
Denef, Vincent J

Publication type:

Article

Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271).

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 462, doi. 10.4056/sigs.4458283

By:

Nandasena, Kemanthi;
Yates, Ron;
Tiwari, Ravi;
O'Hara, Graham;
Howieson, John;
Ninawi, Mohamed;
Chertkov, Olga;
Detter, Chris;
Tapia, Roxanne;
Han, Shunseng;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Land, Miriam;
Liolios, Konstantinos;
Pati, Amrita;
Copeland, Alex;
Kyrpides, Nikos;
Ivanova, Natalia;
Goodwin, Lynne

Publication type:

Article

Complete genome sequence of Anabaena variabilis ATCC 29413.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 562, doi. 10.4056/sigs.3899418

By:

Thiel, Teresa;
Pratte, Brenda;
Zhong, Jinshun;
Goodwin, Lynne;
Copeland, Alex;
Lucas, Susan;
Han, Cliff;
Pitluck, Sam;
Land, Miriam;
Kyrpides, Nikos;
Woyke, Tanja

Publication type:

Article

Complete Genome sequence of Burkholderia phymatum STM815, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 763, doi. 10.4056/sigs.4861021

By:

Moulin, Lionel;
Klonowska, Agnieszka;
Caroline, Bournaud;
Booth, Kristina;
Vriezen, Jan;
Melkonian, Rémy;
James, Euan;
Young, J.;
Bena, Gilles;
Hauser, Loren;
Land, Miriam;
Kyrpides, Nikos;
Bruce, David;
Chain, Patrick;
Copeland, Alex;
Pitluck, Sam;
Woyke, Tanja;
Lizotte-Waniewski, Michelle;
Bristow, Jim;
Riley, Margaret

Publication type:

Article

Complete genome sequence of Granulicella tundricola type strain MP5ACTX9, an Acidobacteria from tundra soil.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 449, doi. 10.4056/sigs.4648353

By:

Rawat, Suman;
Männistö, Minna;
Starovoytov, Valentin;
Goodwin, Lynne;
Nolan, Matt;
Hauser, Loren;
Land, Miriam;
Davenport, Karen;
Woyke, Tanja;
Häggblom, Max

Publication type:

Article

Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 294, doi. 10.4056/sigs.4538264

By:

Reeve, Wayne;
Nandasena, Kemanthi;
Yates, Ron;
Tiwari, Ravi;
O'Hara, Graham;
Ninawi, Mohamed;
Chertkov, Olga;
Goodwin, Lynne;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Shunseng;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Land, Miriam;
Copeland, Alex;
Liolios, Konstantinos;
Pati, Amrita;
Mavromatis, Konstantinos

Publication type:

Article

Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134).

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 28, doi. 10.4056/sigs.4207886

By:

Meier-Kolthoff, Jan;
Lu, Megan;
Huntemann, Marcel;
Lucas, Susan;
Lapidus, Alla;
Copeland, Alex;
Pitluck, Sam;
Goodwin, Lynne;
Han, Cliff;
Tapia, Roxanne;
Pötter, Gabriele;
Land, Miriam;
Ivanova, Natalia;
Rohde, Manfred;
Göker, Markus;
Detter, John;
Woyke, Tanja;
Kyrpides, Nikos;
Klenk, Hans-Peter

Publication type:

Article

Complete genome sequence of Granulicella mallensis type strain MP5ACTX8, an acidobacterium from tundra soil.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 71, doi. 10.4056/sigs.4328031

By:

Rawat, Suman;
Männistö, Minna;
Starovoytov, Valentin;
Goodwin, Lynne;
Nolan, Matt;
Hauser, Loren;
Land, Miriam;
Davenport, Karen;
Woyke, Tanja;
Häggblom, Max

Publication type:

Article

Genome sequence of Frateuria aurantia type strain (Kondô 67), a xanthomonade isolated from Lilium auratium Lindl.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 83, doi. 10.4056/sigs.4338002

By:

Anderson, Iain;
Teshima, Huzuki;
Nolan, Matt;
Lapidus, Alla;
Tice, Hope;
Glavina Del Rio, Tijana;
Cheng, Jan-Fang;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna;
Land, Miriam

Publication type:

Article

Complete genome sequence of Halorhodospira halophila SL1.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 206, doi. 10.4056/sigs.3677284

By:

Challacombe, Jean;
Majid, Sophia;
Deole, Ratnakar;
Brettin, Thomas;
Bruce, David;
Delano, Susana;
Detter, John;
Gleasner, Cheryl;
Han, Cliff;
Misra, Monica;
Reitenga, Krista;
Mikhailova, Natalia;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Land, Miriam;
Saunders, Elizabeth;
Tapia, Roxanne;
Lapidus, Alla;
Ivanova, Natalia

Publication type:

Article

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055).

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 177, doi. 10.4056/sigs.3637201

By:

Huntemann, Marcel;
Stackebrandt, Erko;
Held, Brittany;
Nolan, Matt;
Lucas, Susan;
Hammon, Nancy;
Deshpande, Shweta;
Cheng, Jan-Fang;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Pagani, Ioanna;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna;
Land, Miriam

Publication type:

Article

Permanent draft genome sequence of Comamonas testosteroni KF-1.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 239, doi. 10.4056/sigs.3847890

By:

Weiss, Michael;
Kesberg, Anna;
LaButti, Kurt;
Pitluck, Sam;
Bruce, David;
Hauser, Loren;
Copeland, Alex;
Woyke, Tanja;
Lowry, Stephen;
Lucas, Susan;
Land, Miriam;
Goodwin, Lynne;
Kjelleberg, Staffan;
Cook, Alasdair;
Buhmann, Matthias;
Thomas, Torsten;
Schleheck, David

Publication type:

Article

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 304, doi. 10.4056/sigs.3226659

By:

Spring, Stefan;
Visser, Michael;
Lu, Megan;
Copeland, Alex;
Lapidus, Alla;
Lucas, Susan;
Jan-Fang Cheng;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne A.;
Pitluck, Sam;
Ivanova, Natalia;
Land, Miriam;
Hauser, Loren;
Larimer, Frank;
Rohde, Manfred;
Göker, Markus;
Detter, John C.;
Kyrpides, Nikos C.;
Woyke, Tanja

Publication type:

Article

Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8T).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 210, doi. 10.4056/sigs.3117229

By:

Anderson, Iain;
Munk, Christine;
Lapidus, Alla;
Nolan, Matt;
Lucas, Susan;
Tice, Hope;
Del Rio, Tijana Glavina;
Jan-Fang Cheng;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne;
Pitluck, Sam;
Liolios, Konstantinos;
Mavromatis, Konstantinos;
Pagani, Ioanna;
Mikhailova, Natalia;
Pati, Amrita;
Chen, Amy;
Palaniappan, Krishna;
Land, Miriam

Publication type:

Article

Complete genome sequence of Thermovibrio ammonificans HB-1T, a thermophilic, chemolithoautotrophic bacterium isolated from a deep-sea hydrothermal vent.

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 82, doi. 10.4056/sigs.2856770

By:

Giovannelli, Donato;
Ricci, Jessica;
Pírez-Rodríguez, Ileana;
Hügler, Michael;
O'Brien, Charles;
Keddis, Ramaydalis;
Grosche, Ashley;
Goodwin, Lynne;
Bruce, David;
Davenport, Karen W.;
Detter, Chris;
James Han;
Han, Shunsheng;
Ivanova, Natalia;
Land, Miriam L.;
Mikhailova, Natalia;
Nolan, Matt;
Pitluck, Sam;
Tapia, Roxanne;
Woyke, Tanja

Publication type:

Article

Complete genome sequence of Terriglobus saanensis type strain SP1PR4T, an Acidobacteria from tundra soil.

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 59, doi. 10.4056/sigs.3036810

By:

Rawat, Suman R.;
Männistö, Minna K.;
Starovoytov, Valentin;
Goodwin, Lynne;
Nolan, Matt;
Hauser, Lauren;
Land, Miriam;
Davenport, Karen Walston;
Woyke, Tanja;
Häggblom, Max M.

Publication type:

Article

Complete genome sequence of Marinomonas posidonica type strain (IVIA-Po-181T).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 31, doi. 10.4056/sigs.2976373

By:

Lucas-Elío, Patricia;
Goodwin, Lynne;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Kyrpides, Nikos C.;
Detter, Janine C.;
Copeland, Alex;
Megan Lu;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Shunsheng Han;
Land, Miriam L.;
Ivanova, Natalia;
Mikhailova, Natalia;
Johnston, Andrew W. B.;
Sanchez-Amat, Antonio

Publication type:

Article

Complete genome sequence of the plant-associated Serratia plymuthica strain AS13.

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 22, doi. 10.4056/sigs.2966299

By:

Neupane, Saraswoti;
Finlay, Roger D.;
Kyrpides, Nikos C.;
Goodwin, Lynne;
Alström, Sadhna;
Lucas, Susan;
Land, Miriam;
Han, James;
Lapidus, Alla;
Jan-Fang Cheng;
Bruce, David;
Pitluck, Sam;
Peters, Lin;
Ovchinnikova, Galina;
Held, Brittany;
Cliff Han;
Detter, John C.;
Tapia, Roxanne;
Hauser, Loren;
Ivanova, Natalia

Publication type:

Article

Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase.

Published in:

2023

By:

Chivian, Dylan;
Jungbluth, Sean P.;
Dehal, Paramvir S.;
Wood-Charlson, Elisha M.;
Canon, Richard S.;
Allen, Benjamin H.;
Clark, Mikayla M.;
Gu, Tianhao;
Land, Miriam L.;
Price, Gavin A.;
Riehl, William J.;
Sneddon, Michael W.;
Sutormin, Roman;
Zhang, Qizhi;
Cottingham, Robert W.;
Henry, Chris S.;
Arkin, Adam P.

Publication type:

Correction Notice

Metagenome-assembled genome extraction and analysis from microbiomes using KBase.

Published in:

Nature Protocols, 2023, v. 18, n. 1, p. 208, doi. 10.1038/s41596-022-00747-x

By:

Chivian, Dylan;
Jungbluth, Sean P.;
Dehal, Paramvir S.;
Wood-Charlson, Elisha M.;
Canon, Richard S.;
Allen, Benjamin H.;
Clark, Mikayla M.;
Gu, Tianhao;
Land, Miriam L.;
Price, Gavin A.;
Riehl, William J.;
Sneddon, Michael W.;
Sutormin, Roman;
Zhang, Qizhi;
Cottingham, Robert W.;
Henry, Chris S.;
Arkin, Adam P.

Publication type:

Article

Genome Sequence of the Mesophilic Thermotogales Bacterium Mesotoga prima MesG1.Ag.4.2 Reveals the Largest Thermotogales Genome To Date.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 812, doi. 10.1093/gbe/evs059

By:

Zhaxybayeva, Olga;
Swithers, Kristen S.;
Foght, Julia;
Green, Anna G.;
Bruce, David;
Detter, Chris;
Han, Shunsheng;
Teshima, Hazuki;
Han, James;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Ivanova, Natalia;
Pati, Amrita;
Land, Miriam L.;
Dlutek, Marlena;
Doolittle, W. Ford;
Noll, Kenneth M.;
Nesbø, Camilla L.

Publication type:

Article

The Whole Genome Sequence of Sphingobium chlorophenolicum L-1: Insights into the Evolution of the Pentachlorophenol Degradation Pathway.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 184, doi. 10.1093/gbe/evr137

By:

Copley, Shelley D.;
Rokicki, Joseph;
Turner, Pernilla;
Daligault, Hajnalka;
Nolan, Matt;
Land, Miriam

Publication type:

Article

Genome Sequence of the Mesophilic Thermotogales Bacterium Mesotoga prima MesG1.Ag.4.2 Reveals the Largest Thermotogales Genome To Date.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 8, p. 812, doi. 10.1093/gbe/evs059

By:

Zhaxybayeva, Olga;
Swithers, Kristen S.;
Foght, Julia;
Green, Anna G.;
Bruce, David;
Detter, Chris;
Han, Shunsheng;
Teshima, Hazuki;
Han, James;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Ivanova, Natalia;
Pati, Amrita;
Land, Miriam L.;
Dlutek, Marlena;
Doolittle, W. Ford;
Noll, Kenneth M.;
Nesbø, Camilla L.

Publication type:

Article

The Whole Genome Sequence of Sphingobium chlorophenolicum L-1: Insights into the Evolution of the Pentachlorophenol Degradation Pathway.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 2, p. 184, doi. 10.1093/gbe/evr137

By:

Copley, Shelley D.;
Rokicki, Joseph;
Turner, Pernilla;
Daligault, Hajnalka;
Nolan, Matt;
Land, Miriam

Publication type:

Article

Genome-scale resources for Thermoanaerobacterium saccharolyticum.

Published in:

BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0159-x

By:

Currie, Devin H.;
Raman, Babu;
Gowen, Christopher M.;
Tschaplinski, Timothy J.;
Land, Miriam L.;
Brown, Steven D.;
Covalla, Sean F.;
Klingeman, Dawn M.;
Yang, Zamin K.;
Engle, Nancy L.;
Johnson, Courtney M.;
Rodriguez, Miguel;
Shaw, A. Joe;
Kenealy1, William R.;
Lynd, Lee R.;
Fong, Stephen S.;
Mielenz, Jonathan R.;
Davison, Brian H.;
Hogsett, David A.;
Herring, Christopher D.

Publication type:

Article

The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.

Published in:

2012

By:

Aklujkar, Muktak;
Haveman, Shelley A.;
DiDonato Jr., Raymond;
Chertkov, Olga;
Han, Cliff S.;
Land, Miriam L.;
Brown, Peter;
Lovley, Derek R.

Publication type:

Back Cover

Complete Genome Sequence of Geobacillus strain Y4.1MC1, a Novel CO-Utilizing Geobacillus thermoglucosidasius Strain Isolated from Bath Hot Spring in Yellowstone National Park.

Published in:

BioEnergy Research, 2015, v. 8, n. 3, p. 1039, doi. 10.1007/s12155-015-9585-2

By:

Brumm, Phillip;
Land, Miriam;
Hauser, Loren;
Jeffries, Cynthia;
Chang, Yun-Juan;
Mead, David

Publication type:

Article

Next generation models for storage and representation of microbial biological annotation.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1

By:

Quest, Daniel J.;
Land, Miriam L.;
Brettin, Thomas S.;
Cottingham, Robert W.

Publication type:

Article

Prodigal: prokaryotic gene recognition andtranslation initiation site identification.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 119, doi. 10.1186/1471-2105-11-119

By:

Hyatt, Doug;
Gwo-Liang Chen;
LoCascio, Philip F.;
Land, Miriam L.;
Larimer, Frank W.;
Hauser, Loren J.

Publication type:

Article

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2709, doi. 10.1093/bioinformatics/btu391

By:

Utturkar, Sagar M.;
Klingeman, Dawn M.;
Land, Miriam L.;
Schadt, Christopher W.;
Doktycz, Mitchel J.;
Pelletier, Dale A.;
Brown, Steven D.

Publication type:

Article

Insights from 20 years of bacterial genome sequencing.

Published in:

Functional & Integrative Genomics, 2015, v. 15, n. 2, p. 141, doi. 10.1007/s10142-015-0433-4

By:

Land, Miriam;
Hauser, Loren;
Jun, Se-Ran;
Nookaew, Intawat;
Leuze, Michael;
Ahn, Tae-Hyuk;
Karpinets, Tatiana;
Lund, Ole;
Kora, Guruprased;
Wassenaar, Trudy;
Poudel, Suresh;
Ussery, David

Publication type:

Article

Conserved synteny at the protein family level reveals genes underlying Shewanella species’ cold tolerance and predicts their novel phenotypes.

Published in:

Functional & Integrative Genomics, 2010, v. 10, n. 1, p. 97, doi. 10.1007/s10142-009-0142-y

By:

Karpinets, Tatiana V.;
Obraztsova, Anna Y.;
Wang, Yanbing;
Schmoyer, Denise D.;
Kora, Guruprasad H.;
Park, Byung H.;
Serres, Margrethe H.;
Romine, Margaret F.;
Land, Miriam L.;
Kothe, Terence B.;
Fredrickson, Jim K.;
Nealson, Kenneth H.;
Uberbacher, Edward C.

Publication type:

Article

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation.

Published in:

Nature, 2003, v. 424, n. 6952, p. 1042, doi. 10.1038/nature01947

By:

Rocap, Cabrielle;
Larimer, Frank W.;
Lamerdin, Jane;
Malfatti, Stephanie;
Chain, Patrick;
Ahlgren, Nathan A.;
Arellano, Andrae;
Coleman, Maureen;
Hauser, Loren;
Hess, Wolfgang R.;
Johnson, Zackary I.;
Land, Miriam;
Lindell, Debbie;
Post, Anton F.;
Regala, Warren;
Shah, Manesh;
Shaw, Stephanie L.;
Steglich, Claudia;
Sullivan, Matthew B.;
Ting, Claire S.

Publication type:

Article

Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0118285

By:

Petit, Elsa;
Coppi, Maddalena V.;
Hayes, James C.;
Tolonen, Andrew C.;
Warnick, Thomas;
Latouf, William G.;
Amisano, Danielle;
Biddle, Amy;
Mukherjee, Supratim;
Ivanova, Natalia;
Lykidis, Athanassios;
Land, Miriam;
Hauser, Loren;
Kyrpides, Nikos;
Henrissat, Bernard;
Lau, Joanne;
Schnell, Danny J.;
Church, George M.;
Leschine, Susan B.;
Blanchard, Jeffrey L.

Publication type:

Article

Industrial Robustness: Understanding the Mechanism of Tolerance for the Populus Hydrolysate-Tolerant Mutant Strain of Clostridium thermocellum.

Published in:

PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0078829

By:

Linville, Jessica L.;
Rodriguez Jr., Miguel;
Land, Miriam;
Syed, Mustafa H.;
Engle, Nancy L.;
Tschaplinski, Timothy J.;
Mielenz, Jonathan R.;
Cox, Chris D.

Publication type:

Article

Genome Analysis and Physiological Comparison of Alicycliphilus denitrificans Strains BC and K601T.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066971

By:

Oosterkamp, Margreet J.;
Veuskens, Teun;
Talarico Saia, Flávia;
Weelink, Sander A. B.;
Goodwin, Lynne A.;
Daligault, Hajnalka E.;
Bruce, David C.;
Detter, John C.;
Tapia, Roxanne;
Han, Cliff S.;
Land, Miriam L.;
Hauser, Loren J.;
Langenhoff, Alette A. M.;
Gerritse, Jan;
van Berkel, Willem J. H.;
Pieper, Dietmar H.;
Junca, Howard;
Smidt, Hauke;
Schraa, Gosse;
Davids, Mark

Publication type:

Article

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0048837

By:

Mavromatis, Konstantinos;
Land, Miriam L.;
Brettin, Thomas S.;
Quest, Daniel J.;
Copeland, Alex;
Clum, Alicia;
Goodwin, Lynne;
Woyke, Tanja;
Lapidus, Alla;
Klenk, Hans Peter;
Cottingham, Robert W.;
Kyrpides, Nikos C.

Publication type:

Article

Biological Consequences of Ancient Gene Acquisition and Duplication in the Large Genome of Candidatus Solibacter usitatus Ellin6076.

Published in:

PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024882

By:

Challacombe, Jean F.;
Eichorst, Stephanie A.;
Hauser, Loren;
Land, Miriam;
Xie, Gary;
Kuske, Cheryl R.

Publication type:

Article

Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens.

Published in:

PLoS ONE, 2009, v. 4, n. 6, p. 1, doi. 10.1371/journal.pone.0005797

By:

Anderson, Iain;
Ulrich, Luke E.;
Lupa, Boguslaw;
Susanti, Dwi;
Porat, Iris;
Hooper, Sean D.;
Lykidis, Athanasios;
Sieprawska-Lupa, Magdalena;
Dharmarajan, Lakshmi;
Goltsman, Eugene;
Lapidus, Alla;
Saunders, Elizabeth;
Han, Cliff;
Land, Miriam;
Lucas, Susan;
Mukhopadhyay, Biswarup;
Whitman, William B.;
Woese, Carl;
Bristow, James;
Kyrpides, Nikos

Publication type:

Article

Improved genome annotation for Zymomonas mobilis.

Published in:

2009

By:

Shihui Yang;
Pappas, Katherine M;
Hauser, Loren J;
Land, Miriam L;
Gwo-Liang Chen;
Hurst, Gregory B;
Pan, Chongle;
Kouvelis, Vassili N;
Typas, Milton A;
Pelletier, Dale A;
Klingeman, Dawn M;
Yun-Juan Chang;
Samatova, Nagiza F;
Brown, Steven D

Publication type:

Letter

Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris.

Published in:

Nature Biotechnology, 2004, v. 22, n. 1, p. 55, doi. 10.1038/nbt923

By:

Chain, Patrick;
Hauser, Loren;
Lamerdin, Jane;
Malfatti, Stephanie;
Do, Long;
Bobst, Cedric;
Gibson, Jane;
Peres, Caroline;
Larimer, Frank W.;
Land, Miriam L.;
Pelletier, Dale A.;
Beatty, J. Thomas;
Lang, Andrew S.;
Tabita, F. Robert;
Gibson, Janet L.;
Hanson, Thomas E.;
Torres y Torres, Janelle L.;
Harrison, Faith H.;
Harwood, Caroline S.

Publication type:

Article

Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus.

Published in:

BMC Genomics, 2011, v. 12, n. 1, p. 334, doi. 10.1186/1471-2164-12-334

By:

Kuo-Hsiang Tang;
Barry, Kerrie;
Chertkov, Olga;
Dalin, Eileen;
Han, Cliff S.;
Hauser, Loren J.;
Honchak, Barbara M.;
Karbach, Lauren E.;
Land, Miriam L.;
Lapidus, Alla;
Larimer, Frank W.;
Mikhailova, Natalia;
Pitluck, Samuel;
Pierson, Beverly K.;
Blankenship, Robert E.

Publication type:

Article

Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti.

Published in:

BMC Genomics, 2011, v. 12, n. 1, p. 235, doi. 10.1186/1471-2164-12-235

By:

Galardini, Marco;
Mengoni, Alessio;
Brilli, Matteo;
Pini, Francesco;
Fioravanti, Antonella;
Lucas, Susan;
Lapidus, Alla;
Jan-Fang Cheng;
Goodwin, Lynne;
Pitluck, Samuel;
Land, Miriam;
Hauser, Loren;
Woyke, Tanja;
Mikhailova, Natalia;
Ivanova, Natalia;
Daligault, Hajnalka;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Han, Cliff

Publication type:

Article