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Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data.
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- Molecular Biology & Evolution, 2020, v. 37, n. 2, p. 599, doi. 10.1093/molbev/msz240
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- Article
Dissemination, divergence and establishment of H7N9 influenza viruses in China.
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- Nature, 2015, v. 522, n. 7554, p. 102, doi. 10.1038/nature14348
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- Article
High Diversity of Tick-associated Microbiota from Five Tick Species in Yunnan, China.
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- Zoonoses (2737-7466), 2023, v. 3, n. 1, p. 1, doi. 10.15212/ZOONOSES-2023-0005
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- Article
Editorial: Biomedical Data Visualization: Methods and Applications.
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- Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.890775
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- Article
Epidemiological Dynamics and Phylogeography of Influenza Virus in Southern China.
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- Journal of Infectious Diseases, 2013, v. 207, n. 1, p. 106, doi. 10.1093/infdis/jis526
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- Article
Sequencing and characterization of complete mitogenome DNA of Rasbora tornieri (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance.
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- Journal of Genetics, 2020, v. 99, n. 1, p. 1, doi. 10.1007/s12041-020-01221-x
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- Article
Spatial Dynamics of Human-Origin H1 Influenza A Virus in North American Swine.
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- PLoS Pathogens, 2011, v. 7, n. 6, p. 1, doi. 10.1371/journal.ppat.1002077
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ARGNet: using deep neural networks for robust identification and classification of antibiotic resistance genes from sequences.
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- Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01805-0
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- Article
New insights into the impact of microbiome on horizontal and vertical transmission of a tick-borne pathogen.
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- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01485-2
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- Article
The genesis and source of the H7N9 influenza viruses causing human infections in China.
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- Nature, 2013, v. 502, n. 7470, p. 241, doi. 10.1038/nature12515
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- Article
Baseline Gut Microbiota Was Associated with Long-Term Immune Response at One Year Following Three Doses of BNT162b2.
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- Vaccines, 2024, v. 12, n. 8, p. 916, doi. 10.3390/vaccines12080916
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- Article
Association between Gut Microbiota Composition and Long-Term Vaccine Immunogenicity following Three Doses of CoronaVac.
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- Vaccines, 2024, v. 12, n. 4, p. 365, doi. 10.3390/vaccines12040365
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- Article
Evaluation of Mycobacterium tuberculosis enrichment in metagenomic samples using ONT adaptive sequencing and amplicon sequencing for identification and variant calling.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-32378-x
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- Article
Migration and Persistence of Human Influenza A Viruses, Vietnam, 2001-2008.
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- Emerging Infectious Diseases, 2013, v. 19, n. 11, p. 1756, doi. 10.3201/eid1911.130349
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- Article
Genetic Variation of Multiple Serotypes of Enteroviruses Associated with Hand, Foot and Mouth Disease in Southern China.
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- Virologica Sinica (16740769), 2021, v. 36, n. 1, p. 61, doi. 10.1007/s12250-020-00266-7
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- Article
Comparison of Mutation Patterns in Full-Genome A/H3N2 Influenza Sequences Obtained Directly from Clinical Samples and the Same Samples after a Single MDCK Passage.
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- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079252
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Molecular Characterization of the Fecal Microbiota in Patients with Nonalcoholic Steatohepatitis – A Longitudinal Study.
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- PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0062885
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- Article
Robust expansion of phylogeny for fast-growing genome sequence data.
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- PLoS Computational Biology, 2024, v. 20, n. 2, p. 1, doi. 10.1371/journal.pcbi.1011871
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- Article
Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree.
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- Molecular Biology & Evolution, 2018, v. 35, n. 12, p. 3041, doi. 10.1093/molbev/msy194
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Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds.
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- Ecology Letters, 2012, v. 15, n. 1, p. 24, doi. 10.1111/j.1461-0248.2011.01703.x
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Phylodynamics of H5N1 avian influenza virus in Indonesia.
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- Molecular Ecology, 2012, v. 21, n. 12, p. 3062, doi. 10.1111/j.1365-294X.2012.05577.x
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ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data.
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- Methods in Ecology & Evolution, 2017, v. 8, n. 1, p. 28, doi. 10.1111/2041-210X.12628
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Genotype and organ effect on the occupancy of phyllosphere prokaryotes in different rice landraces.
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- Archives of Microbiology, 2022, v. 204, n. 10, p. 1, doi. 10.1007/s00203-022-03209-w
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Genomic characterization of a new CRF01_AE/CRF07_BC case from a MSM patient in Guangdong, China.
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- Journal of Medical Virology, 2021, v. 93, n. 11, p. 6383, doi. 10.1002/jmv.26799
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Challenges for ticks and tick-borne diseases research in Southeast Asia: Insight from the first international symposium in Cambodia.
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- PLoS Neglected Tropical Diseases, 2024, v. 18, n. 7, p. 1, doi. 10.1371/journal.pntd.0012269
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Epidemiological and Evolutionary Dynamics of Influenza B Viruses in Malaysia, 2012-2014.
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- PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0136254
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Association between inflammatory cytokines and anti-SARS-CoV-2 antibodies in hospitalized patients with COVID-19.
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- Immunity & Ageing, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12979-022-00271-2
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