Found: 26

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  • An automated 13.5 hour system for scalable diagnosis and acute management guidance for genetic diseases.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31446-6
    By:
    • Owen, Mallory J.;
    • Lefebvre, Sebastien;
    • Hansen, Christian;
    • Kunard, Chris M.;
    • Dimmock, David P.;
    • Smith, Laurie D.;
    • Scharer, Gunter;
    • Mardach, Rebecca;
    • Willis, Mary J.;
    • Feigenbaum, Annette;
    • Niemi, Anna-Kaisa;
    • Ding, Yan;
    • Van Der Kraan, Luca;
    • Ellsworth, Katarzyna;
    • Guidugli, Lucia;
    • Lajoie, Bryan R.;
    • McPhail, Timothy K.;
    • Mehtalia, Shyamal S.;
    • Chau, Kevin K.;
    • Kwon, Yong H.
    Publication type:
    Article

  • An automated 13.5 hour system for scalable diagnosis and acute management guidance for genetic diseases.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31446-6
    By:
    • Owen, Mallory J.;
    • Lefebvre, Sebastien;
    • Hansen, Christian;
    • Kunard, Chris M.;
    • Dimmock, David P.;
    • Smith, Laurie D.;
    • Scharer, Gunter;
    • Mardach, Rebecca;
    • Willis, Mary J.;
    • Feigenbaum, Annette;
    • Niemi, Anna-Kaisa;
    • Ding, Yan;
    • Van Der Kraan, Luca;
    • Ellsworth, Katarzyna;
    • Guidugli, Lucia;
    • Lajoie, Bryan R.;
    • McPhail, Timothy K.;
    • Mehtalia, Shyamal S.;
    • Chau, Kevin K.;
    • Kwon, Yong H.
    Publication type:
    Article

  • Iterative correction of Hi-C data reveals hallmarks of chromosome organization.

    Published in:
    Nature Methods, 2012, v. 9, n. 10, p. 999, doi. 10.1038/nmeth.2148
    By:
    • Imakaev, Maxim;
    • Fudenberg, Geoffrey;
    • McCord, Rachel Patton;
    • Naumova, Natalia;
    • Goloborodko, Anton;
    • Lajoie, Bryan R;
    • Dekker, Job;
    • Mirny, Leonid A
    Publication type:
    Article

  • Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping.

    Published in:
    Nature Methods, 2011, v. 8, n. 12, p. 1059, doi. 10.1038/nmeth.1748
    By:
    • Reece-Hoyes, John S;
    • Diallo, Alos;
    • Lajoie, Bryan;
    • Kent, Amanda;
    • Shrestha, Shaleen;
    • Kadreppa, Sreenath;
    • Pesyna, Colin;
    • Dekker, Job;
    • Myers, Chad L;
    • Walhout, Albertha J M
    Publication type:
    Article

  • My5C: web tools for chromosome conformation capture studies.

    Published in:
    2009
    By:
    • Lajoie, Bryan R.;
    • van Berkum, Nynke L.;
    • Sanyal, Amartya;
    • Dekker, Job
    Publication type:
    Letter

  • The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.

    Published in:
    Nature Structural & Molecular Biology, 2011, v. 18, n. 1, p. 107, doi. 10.1038/nsmb.1936
    By:
    • Baù, Davide;
    • Sanyal, Amartya;
    • Lajoie, Bryan R;
    • Capriotti, Emidio;
    • Byron, Meg;
    • Lawrence, Jeanne B;
    • Dekker, Job;
    • Marti-Renom, Marc A
    Publication type:
    Article

  • ArCH: improving the performance of clonal hematopoiesis variant calling and interpretation.

    Published in:
    Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae121
    By:
    • Chan, Irenaeus C C;
    • Panchot, Alex;
    • Schmidt, Evelyn;
    • McNulty, Samantha;
    • Wiley, Brian J;
    • Liu, Jie;
    • Turner, Kimberly;
    • Moukarzel, Lea;
    • Wong, Wendy S W;
    • Tran, Duc;
    • Beeler, J Scott;
    • Batchi-Bouyou, Armel Landry;
    • Machiela, Mitchell J;
    • Karyadi, Danielle M;
    • Krajacich, Benjamin J;
    • Zhao, Junhua;
    • Kruglyak, Semyon;
    • Lajoie, Bryan;
    • Levy, Shawn;
    • Patel, Minal
    Publication type:
    Article

  • Genetics and Genomics of Longitudinal Lung Function Patterns in Individuals with Asthma.

    Published in:
    American Journal of Respiratory & Critical Care Medicine, 2016, v. 194, n. 12, p. 1465, doi. 10.1164/rccm.201602-0250OC
    By:
    • McGeachie, Michael J.;
    • Yates, Katherine P.;
    • Xiaobo Zhou;
    • Feng Guo;
    • Sternberg, Alice L.;
    • Van Natta, Mark L.;
    • Wise, Robert A.;
    • Szefler, Stanley J.;
    • Sharma, Sunita;
    • Kho, Alvin T.;
    • Cho, Michael H.;
    • Croteau-Chonka, Damien C.;
    • Castaldi, Peter J.;
    • Jain, Gaurav;
    • Sanyal, Amartya;
    • Ye Zhan;
    • Lajoie, Bryan R.;
    • Dekker, Job;
    • Stamatoyannopoulos, John;
    • Covar, Ronina A.
    Publication type:
    Article

  • Genetics and Genomics of Longitudinal Lung Function Patterns in Individuals with Asthma.

    Published in:
    2016
    By:
    • McGeachie, Michael J;
    • Yates, Katherine P;
    • Zhou, Xiaobo;
    • Guo, Feng;
    • Sternberg, Alice L;
    • Van Natta, Mark L;
    • Wise, Robert A;
    • Szefler, Stanley J;
    • Sharma, Sunita;
    • Kho, Alvin T;
    • Cho, Michael H;
    • Croteau-Chonka, Damien C;
    • Castaldi, Peter J;
    • Jain, Gaurav;
    • Sanyal, Amartya;
    • Zhan, Ye;
    • Lajoie, Bryan R;
    • Dekker, Job;
    • Stamatoyannopoulos, John;
    • Covar, Ronina A
    Publication type:
    journal article

  • The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12211-8
    By:
    • Erceg, Jelena;
    • AlHaj Abed, Jumana;
    • Goloborodko, Anton;
    • Lajoie, Bryan R.;
    • Fudenberg, Geoffrey;
    • Abdennur, Nezar;
    • Imakaev, Maxim;
    • McCole, Ruth B.;
    • Nguyen, Son C.;
    • Saylor, Wren;
    • Joyce, Eric F.;
    • Senaratne, T. Niroshini;
    • Hannan, Mohammed A.;
    • Nir, Guy;
    • Dekker, Job;
    • Mirny, Leonid A.;
    • Wu, C.-ting
    Publication type:
    Article

  • Highly structured homolog pairing reflects functional organization of the Drosophila genome.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12208-3
    By:
    • AlHaj Abed, Jumana;
    • Erceg, Jelena;
    • Goloborodko, Anton;
    • Nguyen, Son C.;
    • McCole, Ruth B.;
    • Saylor, Wren;
    • Fudenberg, Geoffrey;
    • Lajoie, Bryan R.;
    • Dekker, Job;
    • Mirny, Leonid A.;
    • Wu, C.-ting
    Publication type:
    Article

  • A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

    Published in:
    Nature, 2011, v. 472, n. 7341, p. 120, doi. 10.1038/nature09819
    By:
    • Kevin C. Wang;
    • Yul W. Yang;
    • Bo Liu;
    • Sanyal, Amartya;
    • Corces-Zimmerman, Ryan;
    • Yong Chen;
    • Lajoie, Bryan R.;
    • Protacio, Angeline;
    • Flynn, Ryan A.;
    • Gupta, Rajnish A.;
    • Wysocka, Joanna;
    • Ming Lei;
    • Dekker, Job;
    • Helms, Jill A.;
    • Howard Y. Chang
    Publication type:
    Article

  • Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells.

    Published in:
    Life Science Alliance, 2024, v. 7, n. 2, p. 1, doi. 10.26508/lsa.202302154
    By:
    • Kocanova, Silvia;
    • Raynal, Flavien;
    • Goiffon, Isabelle;
    • Oksuz, Betul Akgol;
    • Baú, Davide;
    • Kamgoué, Alain;
    • Cantaloube, Sylvain;
    • Ye Zhan;
    • Lajoie, Bryan;
    • Marti-Renom, Marc A.;
    • Dekker, Job;
    • Bystricky, Kerstin
    Publication type:
    Article

  • Genome sequencing in persistently unsolved white matter disorders.

    Published in:
    Annals of Clinical & Translational Neurology, 2020, v. 7, n. 1, p. 144, doi. 10.1002/acn3.50957
    By:
    • Helman, Guy;
    • Lajoie, Bryan R.;
    • Crawford, Joanna;
    • Takanohashi, Asako;
    • Walkiewicz, Marzena;
    • Dolzhenko, Egor;
    • Gross, Andrew M.;
    • Gainullin, Vladimir G.;
    • Bent, Stephen J.;
    • Jenkinson, Emma M.;
    • Ferdinandusse, Sacha;
    • Waterham, Hans R.;
    • Dorboz, Imen;
    • Bertini, Enrico;
    • Miyake, Noriko;
    • Wolf, Nicole I.;
    • Abbink, Truus E. M.;
    • Kirwin, Susan M.;
    • Tan, Christina M.;
    • Hobson, Grace M.
    Publication type:
    Article

  • HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.

    Published in:
    Genome Biology, 2015, v. 18, p. 259, doi. 10.1186/s13059-015-0831-x
    By:
    • Servant, Nicolas;
    • Varoquaux, Nelle;
    • Lajoie, Bryan R.;
    • Viara, Eric;
    • Chen, Chong-Jian;
    • Vert, Jean-Philippe;
    • Heard, Edith;
    • Dekker, Job;
    • Barillot, Emmanuel
    Publication type:
    Article

  • Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells.

    Published in:
    Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0768-0
    By:
    • Barutcu, A. Rasim;
    • Lajoie, Bryan R.;
    • McCord, Rachel P.;
    • Tye, Coralee E.;
    • Hong, Deli;
    • Messier, Terri L.;
    • Browne, Gillian;
    • van Wijnen, Andre J.;
    • Lian, Jane B.;
    • Stein, Janet L.;
    • Dekker, Job;
    • Imbalzano, Anthony N.;
    • Stein, Gary S.
    Publication type:
    Article

  • Avidity sequencing of whole genomes from retinal degeneration pedigrees identifies causal variants.

    Published in:
    PLoS ONE, 2024, v. 19, n. 10, p. 1, doi. 10.1371/journal.pone.0307266
    By:
    • Biswas, Pooja;
    • Villanueva, Adda;
    • Krajacich, Benjamin J.;
    • Moreno, Juan;
    • Zhao, Junhua;
    • Berry, Anne Marie;
    • Lazaro, Danielle;
    • Lajoie, Bryan R.;
    • Kruglyak, Semyon;
    • Ayyagari, Radha
    Publication type:
    Article

  • Condensin-driven remodelling of X chromosome topology during dosage compensation.

    Published in:
    Nature, 2015, v. 523, n. 7559, p. 240, doi. 10.1038/nature14450
    By:
    • Crane, Emily;
    • Bian, Qian;
    • McCord, Rachel Patton;
    • Lajoie, Bryan R.;
    • Wheeler, Bayly S.;
    • Ralston, Edward J.;
    • Uzawa, Satoru;
    • Dekker, Job;
    • Meyer, Barbara J.
    Publication type:
    Article

  • The long-range interaction landscape of gene promoters.

    Published in:
    Nature, 2012, v. 489, n. 7414, p. 109, doi. 10.1038/nature11279
    By:
    • Sanyal, Amartya;
    • Lajoie, Bryan R.;
    • Jain, Gaurav;
    • Dekker, Job
    Publication type:
    Article

  • An integrated encyclopedia of DNA elements in the human genome.

    Published in:
    Nature, 2012, v. 489, n. 7414, p. 57, doi. 10.1038/nature11247
    By:
    • Dunham, Ian;
    • Kundaje, Anshul;
    • Aldred, Shelley F.;
    • Collins, Patrick J.;
    • Davis, Carrie A.;
    • Doyle, Francis;
    • Epstein, Charles B.;
    • Frietze, Seth;
    • Harrow, Jennifer;
    • Kaul, Rajinder;
    • Khatun, Jainab;
    • Lajoie, Bryan R.;
    • Landt, Stephen G.;
    • Lee, Bum-Kyu;
    • Pauli, Florencia;
    • Rosenbloom, Kate R.;
    • Sabo, Peter;
    • Safi, Alexias;
    • Sanyal, Amartya;
    • Shoresh, Noam
    Publication type:
    Article

  • Spatial partitioning of the regulatory landscape of the X-inactivation centre.

    Published in:
    Nature, 2012, v. 485, n. 7398, p. 381, doi. 10.1038/nature11049
    By:
    • Nora, Elphège P.;
    • Lajoie, Bryan R.;
    • Schulz, Edda G.;
    • Giorgetti, Luca;
    • Okamoto, Ikuhiro;
    • Servant, Nicolas;
    • Piolot, Tristan;
    • van Berkum, Nynke L.;
    • Meisig, Johannes;
    • Sedat, John;
    • Gribnau, Joost;
    • Barillot, Emmanuel;
    • Blüthgen, Nils;
    • Dekker, Job;
    • Heard, Edith
    Publication type:
    Article

  • ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data.

    Published in:
    Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02017-z
    By:
    • Dolzhenko, Egor;
    • Bennett, Mark F.;
    • Richmond, Phillip A.;
    • Trost, Brett;
    • Chen, Sai;
    • van Vugt, Joke J. F. A.;
    • Nguyen, Charlotte;
    • Narzisi, Giuseppe;
    • Gainullin, Vladimir G.;
    • Gross, Andrew M.;
    • Lajoie, Bryan R.;
    • Taft, Ryan J.;
    • Wasserman, Wyeth W.;
    • Scherer, Stephen W.;
    • Veldink, Jan H.;
    • Bentley, David R.;
    • Yuen, Ryan K. C.;
    • Bahlo, Melanie;
    • Eberle, Michael A.
    Publication type:
    Article

  • Measuring the reproducibility and quality of Hi-C data.

    Published in:
    Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1658-7
    By:
    • Yardımcı, Galip Gürkan;
    • Ozadam, Hakan;
    • Sauria, Michael E. G.;
    • Ursu, Oana;
    • Yan, Koon-Kiu;
    • Yang, Tao;
    • Chakraborty, Abhijit;
    • Kaul, Arya;
    • Lajoie, Bryan R.;
    • Song, Fan;
    • Zhan, Ye;
    • Ay, Ferhat;
    • Gerstein, Mark;
    • Kundaje, Anshul;
    • Li, Qunhua;
    • Taylor, James;
    • Yue, Feng;
    • Dekker, Job;
    • Noble, William S.
    Publication type:
    Article

  • X-linked hypomyelination with spondylometaphyseal dysplasia (H-SMD) associated with mutations in AIFM1.

    Published in:
    Neurogenetics, 2017, v. 18, n. 4, p. 185, doi. 10.1007/s10048-017-0520-x
    By:
    • Miyake, Noriko;
    • Wolf, Nicole;
    • Cayami, Ferdy;
    • Crawford, Joanna;
    • Bley, Annette;
    • Bulas, Dorothy;
    • Conant, Alex;
    • Bent, Stephen;
    • Gripp, Karen;
    • Hahn, Andreas;
    • Humphray, Sean;
    • Kimura-Ohba, Shihoko;
    • Kingsbury, Zoya;
    • Lajoie, Bryan;
    • Lal, Dennis;
    • Micha, Dimitra;
    • Pizzino, Amy;
    • Sinke, Richard;
    • Sival, Deborah;
    • Stolte-Dijkstra, Irene
    Publication type:
    Article

  • ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions.

    Published in:
    Bioinformatics, 2019, v. 35, n. 22, p. 4754, doi. 10.1093/bioinformatics/btz431
    By:
    • Dolzhenko, Egor;
    • Deshpande, Viraj;
    • Schlesinger, Felix;
    • Krusche, Peter;
    • Petrovski, Roman;
    • Chen, Sai;
    • Emig-Agius, Dorothea;
    • Gross, Andrew;
    • Narzisi, Giuseppe;
    • Bowman, Brett;
    • Scheffler, Konrad;
    • Vugt, Joke J F A van;
    • French, Courtney;
    • Sanchis-Juan, Alba;
    • Ibáñez, Kristina;
    • Tucci, Arianna;
    • Lajoie, Bryan R;
    • Veldink, Jan H;
    • Raymond, F Lucy;
    • Taft, Ryan J
    Publication type:
    Article

  • HiTC: exploration of high-throughput ‘C’ experiments.

    Published in:
    Bioinformatics, 2012, v. 28, n. 21, p. 2843, doi. 10.1093/bioinformatics/bts521
    By:
    • Servant, Nicolas;
    • Lajoie, Bryan R.;
    • Nora, Elphège P.;
    • Giorgetti, Luca;
    • Chen, Chong-Jian;
    • Heard, Edith;
    • Dekker, Job;
    • Barillot, Emmanuel
    Publication type:
    Article