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Colocalization analysis of 3′ UTR alternative polyadenylation quantitative trait loci reveals novel mechanisms underlying associations with lung function.
- Published in:
- Human Molecular Genetics, 2024, v. 33, n. 13, p. 1164, doi. 10.1093/hmg/ddae055
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- Publication type:
- Article
Orb2 enables rare-codon-enriched mRNA expression during Drosophila neuron differentiation.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48344-8
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- Publication type:
- Article
Disease-associated human genetic variation through the lens of precursor and mature RNA structure.
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- Human Genetics, 2022, v. 141, n. 10, p. 1659, doi. 10.1007/s00439-021-02395-9
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- Publication type:
- Article
Global 5′-UTR RNA structure regulates translation of a SERPINA1 mRNA.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 17, p. 9689, doi. 10.1093/nar/gkac739
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- Publication type:
- Article
Rotavirus RNA chaperone mediates global transcriptome-wide increase in RNA backbone flexibility.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 17, p. 10078, doi. 10.1093/nar/gkac738
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- Publication type:
- Article
Quantitative prediction of variant effects on alternative splicing in MAPT using endogenous pre-messenger RNA structure probing.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.73888
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- Publication type:
- Article
Distinct responses to rare codons in select Drosophila tissues.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.76893
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- Publication type:
- Article
Sequence and tissue targeting specificity of ZFP36L2 reveals Elavl2 as a novel target with co-regulation potential.
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- Nucleic Acids Research, 2022, v. 50, n. 7, p. 4068, doi. 10.1093/nar/gkac209
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- Publication type:
- Article
Identifying proximal RNA interactions from cDNA-encoded crosslinks with ShapeJumper.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pcbi.1009632
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- Publication type:
- Article
In vivo architecture of the telomerase RNA catalytic core in Trypanosoma brucei.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. 21, p. 12445, doi. 10.1093/nar/gkab1042
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- Publication type:
- Article
Alternative poly-adenylation modulates α1-antitrypsin expression in chronic obstructive pulmonary disease.
- Published in:
- PLoS Genetics, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pgen.1009912
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- Publication type:
- Article
The Effects of Rare Variants on Lung Function and Emphysema in SPIROMICS.
- Published in:
- 2020
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- Publication type:
- journal article
A Functional riboSNitch in the 3' Untranslated Region of FKBP5 Alters MicroRNA-320a Binding Efficiency and Mediates Vulnerability to Chronic Post-Traumatic Pain.
- Published in:
- Journal of Neuroscience, 2018, v. 38, n. 39, p. 8407, doi. 10.1523/JNEUROSCI.3458-17.2018
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- Publication type:
- Article
A pipeline for computational design of novel RNA-like topologies.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 14, p. 7040, doi. 10.1093/nar/gky524
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- Publication type:
- Article
Classification of RNA structure change by ‘gazing’ at experimental data.
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- Bioinformatics, 2017, v. 33, n. 11, p. 1647, doi. 10.1093/bioinformatics/btx041
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- Publication type:
- Article
Structure-Function Model for Kissing Loop Interactions That Initiate Dimerization of Ty1 RNA.
- Published in:
- Viruses (1999-4915), 2017, v. 9, n. 5, p. 93, doi. 10.3390/v9050093
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- Publication type:
- Article
Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution.
- Published in:
- Wiley Interdisciplinary Reviews: RNA, 2017, v. 8, n. 1, p. n/a, doi. 10.1002/wrna.1374
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- Publication type:
- Article
Selecting against accidental RNA interactions.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.20686
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- Publication type:
- Article
A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer.
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- BMC Medical Genomics, 2016, v. 9, p. 1, doi. 10.1186/s12920-016-0178-5
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- Publication type:
- Article
RNA folding: A clear path to RNA catalysis.
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- Nature Chemical Biology, 2015, v. 11, n. 12, p. 906, doi. 10.1038/nchembio.1954
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- Publication type:
- Article
Single Molecule Cluster Analysis dissects splicing pathway conformational dynamics.
- Published in:
- Nature Methods, 2015, v. 12, n. 11, p. 1077, doi. 10.1038/nmeth.3602
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- Publication type:
- Article
Increased Transcript Complexity in Genes Associated with Chronic Obstructive Pulmonary Disease.
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- PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0140885
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- Publication type:
- Article
The potential of the riboSNitch in personalized medicine.
- Published in:
- Wiley Interdisciplinary Reviews: RNA, 2015, v. 6, n. 5, p. 517, doi. 10.1002/wrna.1291
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- Publication type:
- Article
Detecting riboSNitches with RNA folding algorithms: a genome-wide benchmark.
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- Nucleic Acids Research, 2015, v. 43, n. 3, p. 1859, doi. 10.1093/nar/gkv010
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- Publication type:
- Article
Mapping the Kinetic Barriers of a Large RNA Molecule's Folding Landscape.
- Published in:
- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0085041
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- Publication type:
- Article
Molecular biology: A second layer of information in RNA.
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- Nature, 2014, v. 505, n. 7485, p. 621, doi. 10.1038/505621a
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- Publication type:
- Article
Small RNAs derived from lncRNA RNase MRP have gene-silencing activity relevant to human cartilage–hair hypoplasia.
- Published in:
- Human Molecular Genetics, 2014, v. 23, n. 2, p. 368, doi. 10.1093/hmg/ddt427
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- Publication type:
- Article
Evolutionary Evidence for Alternative Structure in RNA Sequence Co-variation.
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- PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003152
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- Publication type:
- Article
Evaluating our ability to predict the structural disruption of RNA by SNPs.
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- BMC Genomics, 2012, v. 13, n. Suppl 4, p. 1, doi. 10.1186/1471-2164-13-S4-S6
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- Publication type:
- Article
Membrane RNAs in bacteria.
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- Molecular Microbiology, 2011, v. 79, n. 1, p. 1, doi. 10.1111/j.1365-2958.2010.07438.x
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- Publication type:
- Article
Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.
- Published in:
- Nature Genetics, 2010, v. 42, n. 9, p. 781, doi. 10.1038/ng.642
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- Publication type:
- Article
High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis.
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- Nucleic Acids Research, 2008, v. 36, n. 11, p. e63, doi. 10.1093/nar/gkn267
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- Publication type:
- Article
Informatics challenges in structured RNA.
- Published in:
- Briefings in Bioinformatics, 2007, v. 8, n. 5, p. 294, doi. 10.1093/bib/bbm026
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- Publication type:
- Article
Modeling protein recognition of carbohydrates.
- Published in:
- Proteins, 2005, v. 60, n. 4, p. 591, doi. 10.1002/prot.20545
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- Publication type:
- Article
Visualizing complexes of phospholipids with Streptomyces phospholipase D by automated docking.
- Published in:
- Proteins, 2004, v. 57, n. 1, p. 27, doi. 10.1002/prot.20180
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- Publication type:
- Article
Arg343 in human surfactant protein D governs discrimination between glucose and N-acetylglucosamine ligands.
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- Glycobiology, 2004, v. 14, n. 8, p. 693, doi. 10.1093/glycob/cwh088
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- Publication type:
- Article
Perl Programming for Biologists (Book).
- Published in:
- 2004
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- Publication type:
- Book Review
Specific empirical free energy function for automated docking of carbohydrates to proteins.
- Published in:
- Journal of Computational Chemistry, 2003, v. 24, n. 14, p. 1748
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- Publication type:
- Article
Competing modes of self-association in the regulatory domains of Bruton's tyrosine kinase: Intramolecular contact versus asymmetric homodimerization.
- Published in:
- Protein Science: A Publication of the Protein Society, 2002, v. 11, n. 1, p. 36, doi. 10.1110/ps.26702
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- Publication type:
- Article
Automated docking of α-(1→4)- and α-(1→6)-linked glucosyl trisaccharides and maltopentaose into the soybean β-amylase active site.
- Published in:
- Proteins, 2000, v. 40, n. 2, p. 299, doi. 10.1002/(SICI)1097-0134(20000801)40:2<299::AID-PROT100>3.0.CO;2-G
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- Publication type:
- Article
Automated docking of maltose, 2-deoxymaltose, and maltotetraose into the soybean β-amylase active site.
- Published in:
- Proteins, 1999, v. 37, n. 2, p. 166, doi. 10.1002/(SICI)1097-0134(19991101)37:2<166::AID-PROT3>3.0.CO;2-E
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- Publication type:
- Article