Works matching AU Lachmann, Alexander


Results: 31
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    Playbook workflow builder: Interactive construction of bioinformatics workflows.

    Published in:
    PLoS Computational Biology, 2025, v. 21, n. 4, p. 1, doi. 10.1371/journal.pcbi.1012901
    By:
    • Clarke, Daniel J.B.;
    • Evangelista, John Erol;
    • Xie, Zhuorui;
    • Marino, Giacomo B.;
    • Byrd, Anna I.;
    • Maurya, Mano R.;
    • Srinivasan, Sumana;
    • Yu, Keyang;
    • Petrosyan, Varduhi;
    • Roth, Matthew E.;
    • Milinkov, Miroslav;
    • King, Charles Hadley;
    • Vora, Jeet Kiran;
    • Keeney, Jonathon;
    • Nemarich, Christopher;
    • Khan, William;
    • Lachmann, Alexander;
    • Ahmed, Nasheath;
    • Agris, Alexandra;
    • Pan, Juncheng
    Publication type:
    Article
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    KEA: kinase enrichment analysis.

    Published in:
    Bioinformatics, 2009, v. 25, n. 5, p. 684, doi. 10.1093/bioinformatics/btp026
    By:
    • Alexander Lachmann;
    • Avi Maayan
    Publication type:
    Article
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    D2H2: diabetes data and hypothesis hub.

    Published in:
    Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad178
    By:
    • Marino, Giacomo B;
    • Ahmed, Nasheath;
    • Xie, Zhuorui;
    • Jagodnik, Kathleen M;
    • Han, Jason;
    • Clarke, Daniel J B;
    • Lachmann, Alexander;
    • Keller, Mark P;
    • Attie, Alan D;
    • Ma'ayan, Avi
    Publication type:
    Article
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    SigCom LINCS: data and metadata search engine for a million gene expression signatures.

    Published in:
    Nucleic Acids Research, 2022, v. 50, n. W1, p. W697, doi. 10.1093/nar/gkac328
    By:
    • Evangelista, John Erol;
    • Clarke, Daniel J B;
    • Xie, Zhuorui;
    • Lachmann, Alexander;
    • Jeon, Minji;
    • Chen, Kerwin;
    • Jagodnik, Kathleen M;
    • Jenkins, Sherry L;
    • Kuleshov, Maxim V;
    • Wojciechowicz, Megan L;
    • Schürer, Stephan C;
    • Medvedovic, Mario;
    • Ma'ayan, Avi
    Publication type:
    Article
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    KEA3: improved kinase enrichment analysis via data integration.

    Published in:
    Nucleic Acids Research, 2021, v. 49, n. W1, p. W304, doi. 10.1093/nar/gkab359
    By:
    • Kuleshov, Maxim V;
    • Xie, Zhuorui;
    • London, Alexandra B K;
    • Yang, Janice;
    • Evangelista, John Erol;
    • Lachmann, Alexander;
    • Shu, Ingrid;
    • Torre, Denis;
    • Ma'ayan, Avi
    Publication type:
    Article
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    LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.

    Published in:
    Nucleic Acids Research, 2020, v. 48, n. D1, p. D431, doi. 10.1093/nar/gkz1023
    By:
    • Stathias, Vasileios;
    • Turner, John;
    • Koleti, Amar;
    • Vidovic, Dusica;
    • Cooper, Daniel;
    • Fazel-Najafabadi, Mehdi;
    • Pilarczyk, Marcin;
    • Terryn, Raymond;
    • Chung, Caty;
    • Umeano, Afoma;
    • Clarke, Daniel J B;
    • Lachmann, Alexander;
    • Evangelista, John Erol;
    • Ma'ayan, Avi;
    • Medvedovic, Mario;
    • Schürer, Stephan C
    Publication type:
    Article
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    Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.

    Published in:
    Nucleic Acids Research, 2016, v. 44, n. W1, p. W90, doi. 10.1093/nar/gkw377
    By:
    • Kuleshov, Maxim V.;
    • Jones, Matthew R.;
    • Rouillard, Andrew D.;
    • Fernandez, Nicolas F.;
    • Qiaonan Duan;
    • Zichen Wang;
    • Koplev, Simon;
    • Jenkins, Sherry L.;
    • Jagodnik, Kathleen M.;
    • Lachmann, Alexander;
    • McDermott, Michael G.;
    • Monteiro, Caroline D.;
    • Gundersen, Gregory W.;
    • Ma'ayan, Avi
    Publication type:
    Article
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    Getting Started with LINCS Datasets and Tools.

    Published in:
    Current Protocols, 2022, v. 2, n. 7, p. 1, doi. 10.1002/cpz1.487
    By:
    • Xie, Zhuorui;
    • Kropiwnicki, Eryk;
    • Wojciechowicz, Megan L.;
    • Jagodnik, Kathleen M.;
    • Shu, Ingrid;
    • Bailey, Allison;
    • Clarke, Daniel J. B.;
    • Jeon, Minji;
    • Evangelista, John Erol;
    • V. Kuleshov, Maxim;
    • Lachmann, Alexander;
    • Parigi, Abhijna A.;
    • Sanchez, Jose M.;
    • Jenkins, Sherry L.;
    • Ma'ayan, Avi
    Publication type:
    Article
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    Getting Started with the IDG KMC Datasets and Tools.

    Published in:
    Current Protocols, 2022, v. 2, n. 1, p. 1, doi. 10.1002/cpz1.355
    By:
    • Kropiwnicki, Eryk;
    • Binder, Jessica L.;
    • Yang, Jeremy J.;
    • Holmes, Jayme;
    • Lachmann, Alexander;
    • Clarke, Daniel J. B.;
    • Sheils, Timothy;
    • Kelleher, Keith J.;
    • Metzger, Vincent T.;
    • Bologa, Cristian G.;
    • Oprea, Tudor I.;
    • Ma'ayan, Avi
    Publication type:
    Article
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    Systems-level dynamic analyses of fate change in murine embryonic stem cells.

    Published in:
    Nature, 2009, v. 462, n. 7271, p. 358, doi. 10.1038/nature08575
    By:
    • Lu, Rong;
    • Markowetz, Florian;
    • Unwin, Richard D.;
    • Leek, Jeffrey T.;
    • Airoldi, Edoardo M.;
    • MacArthur, Ben D.;
    • Lachmann, Alexander;
    • Rozov, Roye;
    • Ma'ayan, Avi;
    • Boyer, Laurie A.;
    • Troyanskaya, Olga G.;
    • Whetton, Anthony D.;
    • Lemischka, Ihor R.
    Publication type:
    Article
    31

    Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses.

    Published in:
    Nature Biotechnology, 2021, v. 39, n. 2, p. 215, doi. 10.1038/s41587-020-0652-7
    By:
    • Broyde, Joshua;
    • Simpson, David R.;
    • Murray, Diana;
    • Paull, Evan O.;
    • Chu, Brennan W.;
    • Tagore, Somnath;
    • Jones, Sunny J.;
    • Griffin, Aaron T.;
    • Giorgi, Federico M.;
    • Lachmann, Alexander;
    • Jackson, Peter;
    • Sweet-Cordero, E. Alejandro;
    • Honig, Barry;
    • Califano, Andrea
    Publication type:
    Article