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Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems.
- Published in:
- New Phytologist, 2024, v. 242, n. 4, p. 1676, doi. 10.1111/nph.19471
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- Article
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
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- Frontiers in Bioengineering & Biotechnology, 2024, p. 1, doi. 10.3389/fbioe.2024.1356551
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- Article
IMA genome-F18: The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicilliumbiforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1
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- IMA Fungus, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s43008-023-00121-w
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- Article
Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi.
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- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05299-8
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- Article
Spray‐induced gene silencing to identify powdery mildew gene targets and processes for powdery mildew control.
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- Molecular Plant Pathology, 2023, v. 24, n. 9, p. 1168, doi. 10.1111/mpp.13361
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- Article
Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi.
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- Genetics, 2023, v. 224, n. 2, p. 1, doi. 10.1093/genetics/iyad069
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- Article
Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors.
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- Genome Biology & Evolution, 2023, v. 15, n. 4, p. 1, doi. 10.1093/gbe/evad046
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- Article
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37551-4
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- Article
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus.
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- Molecular Biology & Evolution, 2023, v. 40, n. 3, p. 1, doi. 10.1093/molbev/msad045
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- Article
Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi.
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- Genome Biology & Evolution, 2023, v. 15, n. 1, p. 1, doi. 10.1093/gbe/evac185
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- Article
Diversity of genomic adaptations to the post‐fire environment in Pezizales fungi points to crosstalk between charcoal tolerance and sexual development.
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- New Phytologist, 2022, v. 236, n. 3, p. 1154, doi. 10.1111/nph.18407
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- Article
Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap (Lactarius) mushrooms.
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- New Phytologist, 2022, v. 235, n. 1, p. 306, doi. 10.1111/nph.18143
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- Article
Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis.
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- G3: Genes | Genomes | Genetics, 2022, v. 12, n. 5, p. 1, doi. 10.1093/g3journal/jkac061
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- Article
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi.
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- New Phytologist, 2022, v. 233, n. 5, p. 2294, doi. 10.1111/nph.17892
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- Article
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
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- New Phytologist, 2022, v. 233, n. 3, p. 1317, doi. 10.1111/nph.17873
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- Article
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales.
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- New Phytologist, 2022, v. 233, n. 3, p. 1383, doi. 10.1111/nph.17858
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- Article
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates.
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- Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-021-02083-w
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- Article
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27479-y
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- Article
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.
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- New Phytologist, 2021, v. 230, n. 2, p. 774, doi. 10.1111/nph.17160
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- Article
A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology.
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- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01859-y
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- Article
Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes.
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- Environmental Microbiology, 2021, v. 23, n. 1, p. 99, doi. 10.1111/1462-2920.15273
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- Article
Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers.
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- Environmental Microbiology, 2020, v. 22, n. 3, p. 1089, doi. 10.1111/1462-2920.14873
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- Article
Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae.
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- New Phytologist, 2019, v. 224, n. 2, p. 902, doi. 10.1111/nph.16032
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Multi‐omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring.
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- Environmental Microbiology, 2019, v. 21, n. 10, p. 3909, doi. 10.1111/1462-2920.14741
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- Article
Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery.
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- Biotechnology for Biofuels, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13068-019-1569-6
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- Article
Genomics and Development of Lentinus tigrinus: A White-Rot Wood-Decaying Mushroom with Dimorphic Fruiting Bodies.
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- Genome Biology & Evolution, 2018, v. 10, n. 12, p. 3250, doi. 10.1093/gbe/evy246
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- Article
Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina.
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- Molecular Biology & Evolution, 2018, v. 35, n. 8, p. 1840, doi. 10.1093/molbev/msy072
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- Article
Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists.
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- New Phytologist, 2018, v. 217, n. 3, p. 1213, doi. 10.1111/nph.14974
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- Article
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4243-z
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- Article
Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels.
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- Applied Microbiology & Biotechnology, 2017, v. 101, n. 6, p. 2603, doi. 10.1007/s00253-017-8091-1
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- Article
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3286-x
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- Article
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum.
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- Nature Communications, 2016, v. 7, n. 9, p. 12662, doi. 10.1038/ncomms12662
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- Article
Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi.
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- PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0157844
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Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles.
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- PLoS Genetics, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pgen.1006108
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- Article
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities.
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- Molecular Biology & Evolution, 2016, v. 33, n. 4, p. 959, doi. 10.1093/molbev/msv337
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- Article
Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis.
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- PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0151883
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- Article
Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00238
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- Article
FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads.
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- Bioinformatics, 2015, v. 31, n. 19, p. 3207, doi. 10.1093/bioinformatics/btv280
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- Article
Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants.
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- Genome Biology & Evolution, 2015, v. 7, n. 6, p. 1590, doi. 10.1093/gbe/evv090
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- Article
Genetic isolation between two recently diverged populations of a symbiotic fungus.
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- Molecular Ecology, 2015, v. 24, n. 11, p. 2747, doi. 10.1111/mec.13132
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- Article
Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi.
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- Genome Biology & Evolution, 2014, v. 6, n. 7, p. 1564, doi. 10.1093/gbe/evu121
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- Article
Permanent draft genome sequence of Comamonas testosteroni KF-1.
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- Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 239, doi. 10.4056/sigs.3847890
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- Article
Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens.
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- PLoS Genetics, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pgen.1003233
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- Article
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi.
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- PLoS Pathogens, 2012, v. 8, n. 12, p. 1, doi. 10.1371/journal.ppat.1003037
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- Article
Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize.
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- BMC Genomics, 2012, v. 13, n. 1, p. 444, doi. 10.1186/1471-2164-13-444
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- Article
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi.
- Published in:
- PLoS Pathogens, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.ppat.1003037
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- Article
Human chromosome 11 DNA sequence and analysis including novel gene identification.
- Published in:
- Nature, 2006, v. 440, n. 7083, p. 497, doi. 10.1038/nature04632
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- Article