Works by LEEBENS-MACK, JAMES

Results: 49
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    Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP).

    Published in:
    GigaScience, 2019, v. 8, n. 10, p. N.PAG, doi. 10.1093/gigascience/giz126
    By:
    • Carpenter, Eric J;
    • Matasci, Naim;
    • Ayyampalayam, Saravanaraj;
    • Wu, Shuangxiu;
    • Sun, Jing;
    • Yu, Jun;
    • Jimenez Vieira, Fabio Rocha;
    • Bowler, Chris;
    • Dorrell, Richard G;
    • Gitzendanner, Matthew A;
    • Li, Ling;
    • Du, Wensi;
    • K. Ullrich, Kristian;
    • Wickett, Norman J;
    • Barkmann, Todd J;
    • Barker, Michael S;
    • Leebens-Mack, James H;
    • Wong, Gane Ka-Shu
    Publication type:
    Article
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    Elucidating steroid alkaloid biosynthesis in Veratrum californicum: production of verazine in Sf9 cells.

    Published in:
    Plant Journal, 2015, v. 82, n. 6, p. 991, doi. 10.1111/tpj.12871
    By:
    • Augustin, Megan M.;
    • Ruzicka, Dan R.;
    • Shukla, Ashutosh K.;
    • Augustin, Jörg M.;
    • Starks, Courtney M.;
    • O'Neil‐Johnson, Mark;
    • McKain, Michael R.;
    • Evans, Bradley S.;
    • Barrett, Matt D.;
    • Smithson, Ann;
    • Wong, Gane Ka‐Shu;
    • Deyholos, Michael K.;
    • Edger, Patrick P.;
    • Pires, J. Chris;
    • Leebens‐Mack, James H.;
    • Mann, David A.;
    • Kutchan, Toni M.
    Publication type:
    Article
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    Evolution of rapid blue‐light response linked to explosive diversification of ferns in angiosperm forests.

    Published in:
    New Phytologist, 2021, v. 230, n. 3, p. 1201, doi. 10.1111/nph.17135
    By:
    • Cai, Shengguan;
    • Huang, Yuqing;
    • Chen, Fei;
    • Zhang, Xin;
    • Sessa, Emily;
    • Zhao, Chenchen;
    • Marchant, D. Blaine;
    • Xue, Dawei;
    • Chen, Guang;
    • Dai, Fei;
    • Leebens‐Mack, James H.;
    • Zhang, Guoping;
    • Shabala, Sergey;
    • Christie, John M.;
    • Blatt, Michael R.;
    • Nevo, Eviatar;
    • Soltis, Pamela S.;
    • Soltis, Douglas E.;
    • Franks, Peter J.;
    • Wu, Feibo
    Publication type:
    Article
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    Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology.

    Published in:
    BMC Biotechnology, 2016, v. 16, p. 1, doi. 10.1186/s12896-016-0277-6
    By:
    • Lane, Thomas S.;
    • Rempe, Caroline S.;
    • Davitt, Jack;
    • Staton, Margaret E.;
    • Yanhui Peng;
    • Soltis, Douglas Edward;
    • Melkonian, Michael;
    • Deyholos, Michael;
    • Leebens-Mack, James H.;
    • Chase, Mark;
    • Rothfels, Carl J.;
    • Stevenson, Dennis;
    • Graham, Sean W.;
    • Jun Yu;
    • Tao Liu;
    • Pires, J. Chris;
    • Edger, Patrick P.;
    • Yong Zhang;
    • Yinlong Xie;
    • Ying Zhu
    Publication type:
    Article
    14

    EST clustering error evaluation and correction.

    Published in:
    Bioinformatics, 2004, v. 20, n. 17, p. 2973, doi. 10.1093/bioinformatics/bth342
    By:
    • Ji-Ping Z. Wang;
    • Bruce G. Lindsay;
    • James Leebens-Mack;
    • Liying Cui;
    • Kerr Wall;
    • Webb C. Miller;
    • Claude W. dePamphilis
    Publication type:
    Article
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    Focus on the biology of plant genomes.

    Published in:
    Plant Cell, 2021, v. 33, n. 4, p. 781, doi. 10.1093/plcell/koab039
    By:
    • Eckardt, Nancy A;
    • Birchler, James A;
    • Brady, Siobhán M;
    • Buell, C Robin;
    • Leebens-Mack, James H;
    • Meyers, Blake C
    Publication type:
    Article
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    Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi‐gene analyses, and a functional model for the origin of monocots.

    Published in:
    American Journal of Botany, 2018, v. 105, n. 11, p. 1888, doi. 10.1002/ajb2.1178
    By:
    • Givnish, Thomas J.;
    • Zuluaga, Alejandro;
    • Spalink, Daniel;
    • Soto Gomez, Marybel;
    • Lam, Vivienne K. Y.;
    • Saarela, Jeffrey M.;
    • Sass, Chodon;
    • Iles, William J. D.;
    • de Sousa, Danilo José Lima;
    • Leebens‐Mack, James;
    • Chris Pires, J.;
    • Zomlefer, Wendy B.;
    • Gandolfo, Maria A.;
    • Davis, Jerrold I.;
    • Stevenson, Dennis W.;
    • dePamphilis, Claude;
    • Specht, Chelsea D.;
    • Graham, Sean W.;
    • Barrett, Craig F.;
    • Ané, Cécile
    Publication type:
    Article
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    Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses.

    Published in:
    American Journal of Botany, 2018, v. 105, n. 3, p. 463, doi. 10.1002/ajb2.1040
    By:
    • Edger, Patrick P.;
    • Koch, Marcus A.;
    • Al‐Shehbaz, Ihsan A.;
    • Hall, Jocelyn C.;
    • Leebens‐Mack, James;
    • Harkess, Alex;
    • Meyers, Blake C.;
    • Tang, Michelle;
    • Coombs, Jill;
    • Pires, J. Chris;
    • Mohammadin, Setareh;
    • Schranz, M. Eric;
    • Xiong, Zhiyong;
    • Sytsma, Kenneth J.
    Publication type:
    Article
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    Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots.

    Published in:
    New Phytologist, 2016, v. 209, n. 2, p. 855, doi. 10.1111/nph.13617
    By:
    • Barrett, Craig F.;
    • Baker, William J.;
    • Comer, Jason R.;
    • Conran, John G.;
    • Lahmeyer, Sean C.;
    • Leebens‐Mack, James H.;
    • Li, Jeff;
    • Lim, Gwynne S.;
    • Mayfield‐Jones, Dustin R.;
    • Perez, Leticia;
    • Medina, Jesus;
    • Pires, J. Chris;
    • Santos, Cristian;
    • Wm. Stevenson, Dennis;
    • Zomlefer, Wendy B.;
    • Davis, Jerrold I.
    Publication type:
    Article
    32

    No evidence of transposable element bursts in the Galápagos Scalesia adaptive radiation despite hybridization, diversification and ecological niche shifts.

    Published in:
    Mobile DNA, 2025, v. 16, n. 1, p. 1, doi. 10.1186/s13100-025-00362-z
    By:
    • Cerca, José;
    • Díaz, Patricia Jaramillo;
    • Goubert, Clément;
    • Yang, Heidi;
    • Bieker, Vanessa C.;
    • Fernández-Mazuecos, Mario;
    • Vargas, Pablo;
    • Schley, Rowan;
    • Li, Siyu;
    • Guevara-Andino, Juan Ernesto;
    • Petersen, Bent;
    • Petersen, Gitte;
    • Sinha, Neelima R.;
    • Nielsen, Lene R.;
    • Leebens-Mack, James H.;
    • Rivas-Torres, Gonzalo;
    • Rieseberg, Loren H.;
    • Martin, Michael D.
    Publication type:
    Article
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    Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes.

    Published in:
    Plant Physiology, 2017, v. 174, n. 2, p. 904, doi. 10.1104/pp.17.00295
    By:
    • Johnson, Kim L.;
    • Cassin, Andrew M.;
    • Lonsdale, Andrew;
    • Ka-Shu Wong, Gane;
    • Soltis, Douglas E.;
    • Miles, Nicholas W.;
    • Melkonian, Michael;
    • Melkonian, Barbara;
    • Deyholos, Michael K.;
    • Leebens-Mack, James;
    • Rothfels, Carl J.;
    • Stevenson, Dennis W.;
    • Graham, Sean W.;
    • Xumin Wang;
    • Shuangxiu Wu;
    • Pires, J. Chris;
    • Edger, Patrick P.;
    • Carpenter, Eric J.;
    • Bacic, Antony;
    • Doblin, Monika S.
    Publication type:
    Article
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    Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes.

    Published in:
    PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0050226
    By:
    • Johnson, Marc T. J.;
    • Carpenter, Eric J.;
    • Zhijian Tian;
    • Bruskiewich, Richard;
    • Burris, Jason N.;
    • Carrigan, Charlotte T.;
    • Chase, Mark W.;
    • Clarke, Neil D.;
    • Covshoff, Sarah;
    • dePamphilis, Claude W.;
    • Edger, Patrick P.;
    • Goh, Falicia;
    • Graham, Sean;
    • Greiner, Stephan;
    • Hibberd, Julian M.;
    • Jordon-Thaden, Ingrid;
    • Kutchan, Toni M.;
    • Leebens-Mack, James;
    • Melkonian, Michael;
    • Miles, Nicholas
    Publication type:
    Article
    43

    Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering.

    Published in:
    Systematic Biology, 2019, v. 68, n. 4, p. 594, doi. 10.1093/sysbio/syy086
    By:
    • Johnson, Matthew G;
    • Pokorny, Lisa;
    • Dodsworth, Steven;
    • Botigué, Laura R;
    • Cowan, Robyn S;
    • Devault, Alison;
    • Eiserhardt, Wolf L;
    • Epitawalage, Niroshini;
    • Forest, Félix;
    • Kim, Jan T;
    • Leebens-Mack, James H;
    • Leitch, Ilia J;
    • Maurin, Olivier;
    • Soltis, Douglas E;
    • Soltis, Pamela S;
    • Wong, Gane Ka-shu;
    • Baker, William J;
    • Wickett, Norman J
    Publication type:
    Article
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    Phylogenomic analysis of Ranunculales resolves branching events across the order.

    Published in:
    Botanical Journal of the Linnean Society, 2018, v. 187, n. 2, p. 157, doi. 10.1093/botlinnean/boy015
    By:
    • LANE, AMANDA K.;
    • AUGUSTIN, MEGAN M.;
    • AYYAMPALAYAM, SARAVANARAJ;
    • PLANT, ALASTAIR;
    • GLEISSBERG, STEFAN;
    • STILIO, VERÓNICA S. DI;
    • DEPAMPHILIS, CLAUDE W.;
    • WONG, GANE KA-SHU;
    • KUTCHAN, TONI M.;
    • LEEBENS-MACK, JAMES H.
    Publication type:
    Article
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    Comparative genomic analyses in Asparagus.

    Published in:
    Genome, 2005, v. 48, n. 6, p. 1052, doi. 10.1139/G05-073
    By:
    • Kuhl, Joseph C.;
    • Havey, Michael J.;
    • Martin, William J.;
    • Foo Cheung;
    • Qiaoping Yuan;
    • Landherr, Lena;
    • Yi Hu;
    • Leebens-Mack, James;
    • Town, Christopher D.;
    • Sink, Kenneth C.;
    • Schwarzacher, T.
    Publication type:
    Article