Works by Lücker, Sebastian

Results: 37

The draft genome sequence of "Nitrospira lenta" strain BS10, a nitrite oxidizing bacterium isolated from activated sludge.

Published in:

Standards in Genomic Sciences, 2018, v. 13, n. 1, p. N.PAG, doi. 10.1186/s40793-018-0338-7

By:

Sakoula, Dimitra;
Nowka, Boris;
Spieck, Eva;
Daims, Holger;
Lücker, Sebastian

Publication type:

Article

Linear polyacrylamide is highly efficient in precipitating and purifying environmental and ancient DNA.

Published in:

Methods in Ecology & Evolution, 2022, v. 13, n. 3, p. 653, doi. 10.1111/2041-210X.13772

By:

Maixner, Frank;
Mitterer, Christian;
Jäger, Heidi Y.;
Sarhan, Mohamed S.;
Valverde, Guido;
Lücker, Sebastian;
Piombino‐Mascali, Dario;
Szikossy, Ildikó;
Molnár, Erika;
Pálfi, György;
Pap, Ildikó;
Cipollini, Giovanna;
Zink, Albert

Publication type:

Article

Synthesis and Performance of Bio‐Based Amphoteric Surfactants.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 38, p. 1, doi. 10.1002/chem.202400986

By:

Jansen, Laura M.;
den Bakker, Pieter C.;
Venbrux, Niek;
van Rijbroek, Kim W. M.;
Klaassen‐Heshof, Dimphna Johanna;
Lenferink, Wouter B.;
Lücker, Sebastian;
Ranoux, Adeline;
Raaijmakers, Harry W. C.;
Boltje, Thomas J.

Publication type:

Article

daime, a novel image analysis program for microbial ecology and biofilm research.

Published in:

Environmental Microbiology, 2006, v. 8, n. 2, p. 200, doi. 10.1111/j.1462-2920.2005.00880.x

By:

Daims, Holger;
Lücker, Sebastian;
Wagner, Michael

Publication type:

Article

Genomic analysis of the class Phycisphaerae reveals a versatile group of complex carbon-degrading bacteria.

Published in:

Antonie van Leeuwenhoek, 2024, v. 117, n. 1, p. 1, doi. 10.1007/s10482-024-02002-7

By:

Lenferink, Wouter B.;
van Alen, Theo A.;
Jetten, Mike S. M.;
Op den Camp, Huub J. M.;
van Kessel, Maartje A. H. J.;
Lücker, Sebastian

Publication type:

Article

Genomic analysis of the class Phycisphaerae reveals a versatile group of complex carbon-degrading bacteria.

Published in:

Antonie van Leeuwenhoek, 2024, v. 117, n. 1, p. 1, doi. 10.1007/s10482-024-02002-7

By:

Lenferink, Wouter B.;
van Alen, Theo A.;
Jetten, Mike S. M.;
Op den Camp, Huub J. M.;
van Kessel, Maartje A. H. J.;
Lücker, Sebastian

Publication type:

Article

Cyclic Conversions in the Nitrogen Cycle.

Published in:

Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.622504

By:

Kleerebezem, Robbert;
Lücker, Sebastian

Publication type:

Article

Some like it cold: the cellular organization and physiological limits of cold‐tolerant nitrite‐oxidizing Nitrotoga.

Published in:

Environmental Microbiology, 2022, v. 24, n. 4, p. 2059, doi. 10.1111/1462-2920.15958

By:

Keuter, Sabine;
Koch, Hanna;
Sass, Katharina;
Wegen, Simone;
Lee, Natuschka;
Lücker, Sebastian;
Spieck, Eva

Publication type:

Article

Metagenomic recovery of two distinct comammox Nitrospira from the terrestrial subsurface.

Published in:

Environmental Microbiology, 2019, v. 21, n. 10, p. 3627, doi. 10.1111/1462-2920.14691

By:

Poghosyan, Lianna;
Koch, Hanna;
Lavy, Adi;
Frank, Jeroen;
Kessel, Maartje A.H.J.;
Jetten, Mike S.M.;
Banfield, Jillian F.;
Lücker, Sebastian

Publication type:

Article

NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing N itrospira.

Published in:

Environmental Microbiology, 2014, v. 16, n. 10, p. 3055, doi. 10.1111/1462-2920.12300

By:

Pester, Michael;
Maixner, Frank;
Berry, David;
Rattei, Thomas;
Koch, Hanna;
Lücker, Sebastian;
Nowka, Boris;
Richter, Andreas;
Spieck, Eva;
Lebedeva, Elena;
Loy, Alexander;
Wagner, Michael;
Daims, Holger

Publication type:

Article

Spatial distribution analyses of natural phyllosphere-colonizing bacteria on A rabidopsis thaliana revealed by fluorescence in situ hybridization.

Published in:

Environmental Microbiology, 2014, v. 16, n. 7, p. 2329, doi. 10.1111/1462-2920.12482

By:

Remus ‐ Emsermann, Mitja N. P.;
Lücker, Sebastian;
Müller, Daniel B.;
Potthoff, Eva;
Daims, Holger;
Vorholt, Julia A.

Publication type:

Article

Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts.

Published in:

Environmental Microbiology, 2010, v. 12, n. 8, p. 2070, doi. 10.1111/j.1462-2920.2009.02065.x

By:

Webster, Nicole S.;
Taylor, Michael W.;
Behnam, Faris;
Lücker, Sebastian;
Rattei, Thomas;
Whalan, Stephen;
Horn, Matthias;
Wagner, Michael

Publication type:

Article

Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium ‘ Candidatus Nitrospira defluvii’.

Published in:

Environmental Microbiology, 2008, v. 10, n. 11, p. 3043, doi. 10.1111/j.1462-2920.2008.01646.x

By:

Maixner, Frank;
Wagner, Michael;
Lücker, Sebastian;
Pelletier, Eric;
Schmitz-Esser, Stephan;
Hace, Karin;
Spieck, Eva;
Konrat, Robert;
Le Paslier, Denis;
Daims, Holger

Publication type:

Article

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01508

By:

Pjevac, Petra;
Schauberger, Clemens;
Poghosyan, Lianna;
Herbold, Craig W.;
van Kessel, Maartje A. H. J.;
Daebeler, Anne;
Steinberger, Michaela;
Jetten, Mike S. M.;
Lücker, Sebastian;
Wagner, Michael;
Daims, Holger

Publication type:

Article

Unveiling unique microbial nitrogen cycling and nitrification driver in coastal Antarctica.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47392-4

By:

Han, Ping;
Tang, Xiufeng;
Koch, Hanna;
Dong, Xiyang;
Hou, Lijun;
Wang, Danhe;
Zhao, Qian;
Li, Zhe;
Liu, Min;
Lücker, Sebastian;
Shi, Guitao

Publication type:

Article

Feeding strategy and feed protein level affect the gut microbiota of common carp (Cyprinus carpio).

Published in:

Environmental Microbiology Reports, 2024, v. 16, n. 3, p. 1, doi. 10.1111/1758-2229.13262

By:

Mes, Wouter;
Lücker, Sebastian;
Jetten, Mike S. M.;
Siepel, Henk;
Gorissen, Marnix;
van Kessel, Maartje A. H. J.

Publication type:

Article

Proteogenomic analysis of Georgfuchsia toluolica revealed unexpected concurrent aerobic and anaerobic toluene degradation.

Published in:

Environmental Microbiology Reports, 2021, v. 13, n. 6, p. 841, doi. 10.1111/1758-2229.12996

By:

Atashgahi, Siavash;
Oosterkamp, Margreet J.;
Peng, Peng;
Frank, Jeroen;
Kraft, Beate;
Hornung, Bastian;
Schleheck, David;
Lücker, Sebastian;
Jetten, Mike S. M.;
Stams, Alfons J. M.;
Smidt, Hauke

Publication type:

Article

Correction: Trichlorobacter ammonificans, a dedicated acetate-dependent ammonifier with a novel module for dissimilatory nitrate reduction to ammonia.

Published in:

2024

By:

Sorokin, Dimitry Y;
Tikhonova, Tamara V;
Koch, Hanna;
van den Berg, Eveline M;
Hinderks, Renske S;
Pabst, Martin;
Dergousova, Natalia I;
Solovevac, Anastasia Y;
Kuenen, Gijs J;
Popov, Vladimir O;
van Loosdrecht, Mark C M;
Lücker, Sebastian

Publication type:

Correction Notice

Trichlorobacter ammonificans, a dedicated acetate-dependent ammonifier with a novel module for dissimilatory nitrate reduction to ammonia.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2023, v. 17, n. 10, p. 1639, doi. 10.1038/s41396-023-01473-2

By:

Sorokin, Dimitry Y.;
Tikhonova, Tamara V.;
Koch, Hanna;
van den Berg, Eveline M.;
Hinderks, Renske S.;
Pabst, Martin;
Dergousova, Natalia I.;
Soloveva, Anastasia Y.;
Kuenen, Gijs J.;
Popov, Vladimir O.;
van Loosdrecht, Mark C. M.;
Lücker, Sebastian

Publication type:

Article

Hot spring distribution and survival mechanisms of thermophilic comammox Nitrospira.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2023, v. 17, n. 7, p. 993, doi. 10.1038/s41396-023-01409-w

By:

Zhang, Yan;
Liu, Tao;
Li, Meng-Meng;
Hua, Zheng-Shuang;
Evans, Paul;
Qu, Yanni;
Tan, Sha;
Zheng, Min;
Lu, Hui;
Jiao, Jian-Yu;
Lücker, Sebastian;
Daims, Holger;
Li, Wen-Jun;
Guo, Jianhua

Publication type:

Article

Universal activity-based labeling method for ammonia- and alkane-oxidizing bacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 4, p. 958, doi. 10.1038/s41396-021-01144-0

By:

Sakoula, Dimitra;
Smith, Garrett J.;
Frank, Jeroen;
Mesman, Rob J.;
Kop, Linnea F. M.;
Blom, Pieter;
Jetten, Mike S. M.;
van Kessel, Maartje A. H. J.;
Lücker, Sebastian

Publication type:

Article

A general approach to explore prokaryotic protein glycosylation reveals the unique surface layer modulation of an anammox bacterium.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 2, p. 346, doi. 10.1038/s41396-021-01073-y

By:

Pabst, Martin;
Grouzdev, Denis S.;
Lawson, Christopher E.;
Kleikamp, Hugo B. C.;
de Ram, Carol;
Louwen, Rogier;
Lin, Yue Mei;
Lücker, Sebastian;
van Loosdrecht, Mark C. M.;
Laureni, Michele

Publication type:

Article

Ammonia oxidation at pH 2.5 by a new gammaproteobacterial ammonia-oxidizing bacterium.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 4, p. 1150, doi. 10.1038/s41396-020-00840-7

By:

Picone, Nunzia;
Pol, Arjan;
Mesman, Rob;
van Kessel, Maartje A. H. J.;
Cremers, Geert;
van Gelder, Antonie H.;
van Alen, Theo A.;
Jetten, Mike S. M.;
Lücker, Sebastian;
Op den Camp, Huub J. M.

Publication type:

Article

Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 4, p. 1025, doi. 10.1038/s41396-020-00828-3

By:

Bayer, Barbara;
Saito, Mak A.;
McIlvin, Matthew R.;
Lücker, Sebastian;
Moran, Dawn M.;
Lankiewicz, Thomas S.;
Dupont, Christopher L.;
Santoro, Alyson E.

Publication type:

Article

Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 4, p. 1010, doi. 10.1038/s41396-020-00827-4

By:

Sakoula, Dimitra;
Koch, Hanna;
Frank, Jeroen;
Jetten, Mike S. M.;
van Kessel, Maartje A. H. J.;
Lücker, Sebastian

Publication type:

Article

Autotrophic and mixotrophic metabolism of an anammox bacterium revealed by in vivo 13C and 2H metabolic network mapping.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 3, p. 673, doi. 10.1038/s41396-020-00805-w

By:

Lawson, Christopher E.;
Nuijten, Guylaine H. L.;
de Graaf, Rob M.;
Jacobson, Tyler B.;
Pabst, Martin;
Stevenson, David. M.;
Jetten, Mike S. M.;
Noguera, Daniel R.;
McMahon, Katherine D.;
Amador-Noguez, Daniel;
Lücker, Sebastian

Publication type:

Article

Extremophilic nitrite-oxidizing Chloroflexi from Yellowstone hot springs.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 2, p. 364, doi. 10.1038/s41396-019-0530-9

By:

Spieck, Eva;
Spohn, Michael;
Wendt, Katja;
Bock, Eberhard;
Shively, Jessup;
Frank, Jeroen;
Indenbirken, Daniela;
Alawi, Malik;
Lücker, Sebastian;
Hüpeden, Jennifer

Publication type:

Article

Chemosymbiotic bivalves contribute to the nitrogen budget of seagrass ecosystems.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 12, p. 3131, doi. 10.1038/s41396-019-0486-9

By:

Cardini, Ulisse;
Bartoli, Marco;
Lücker, Sebastian;
Mooshammer, Maria;
Polzin, Julia;
Lee, Raymond W.;
Micić, Vesna;
Hofmann, Thilo;
Weber, Miriam;
Petersen, Jillian M.

Publication type:

Article

Uncultured Nitrospina-like species are major nitrite oxidizing bacteria in oxygen minimum zones.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 10, p. 2391, doi. 10.1038/s41396-019-0443-7

By:

Sun, Xin;
Kop, Linnea F. M.;
Lau, Maggie C. Y.;
Frank, Jeroen;
Jayakumar, Amal;
Lücker, Sebastian;
Ward, Bess B.

Publication type:

Article

Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrification.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 11, p. 2669, doi. 10.1038/ismej.2016.56

By:

Hemp, James;
Lücker, Sebastian;
Schott, Joachim;
Pace, Laura A;
Johnson, Jena E;
Schink, Bernhard;
Daims, Holger;
Fischer, Woodward W

Publication type:

Article

Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 3, p. 708, doi. 10.1038/ismej.2014.158

By:

Lücker, Sebastian;
Schwarz, Jasmin;
Gruber-Dorninger, Christiane;
Spieck, Eva;
Wagner, Michael;
Daims, Holger

Publication type:

Article

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 12, p. 2245, doi. 10.1038/ismej.2012.70

By:

Sorokin, Dimitry Y;
Lücker, Sebastian;
Vejmelkova, Dana;
Kostrikina, Nadezhda A;
Kleerebezem, Robbert;
Rijpstra, W Irene C;
Damsté, Jaap S Sinninghe;
Le Paslier, Denis;
Muyzer, Gerard;
Wagner, Michael;
van Loosdrecht, Mark C M;
Daims, Holger

Publication type:

Article

Simple, reference-independent assessment to empirically guide correction and polishing of hybrid microbial community metagenomic assembly.

Published in:

PeerJ, 2024, p. 1, doi. 10.7717/peerj.18132

By:

Smith, Garrett J.;
van Alen, Theo A.;
van Kessel, Maartje A.H.J.;
Lücker, Sebastian

Publication type:

Article

Complete nitrification: insights into the ecophysiology of comammox Nitrospira.

Published in:

Applied Microbiology & Biotechnology, 2019, v. 103, n. 1, p. 177, doi. 10.1007/s00253-018-9486-3

By:

Koch, Hanna;
van Kessel, Maartje A. H. J.;
Lücker, Sebastian

Publication type:

Article

Cultivation and Transcriptional Analysis of a Canonical Nitrospira Under Stable Growth Conditions.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.01325

By:

Mundinger, Aniela B.;
Lawson, Christopher E.;
Jetten, Mike S. M.;
Koch, Hanna;
Lücker, Sebastian

Publication type:

Article

Metabolic Overlap in Environmentally Diverse Microbial Communities.

Published in:

Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00989

By:

Hester, Eric R.;
Jetten, Mike S. M.;
Welte, Cornelia U.;
Lücker, Sebastian

Publication type:

Article

Molecular characterization of the symbionts associated with marine nematodes of the genus Robbea.

Published in:

Environmental Microbiology Reports, 2009, v. 1, n. 2, p. 136, doi. 10.1111/j.1758-2229.2009.00019.x

By:

Bayer, Christoph;
Heindl, Niels R.;
Rinke, Christian;
Lücker, Sebastian;
Ott, Joerg A.;
Bulgheresi, Silvia

Publication type:

Article